data_A1JL3 # _chem_comp.id A1JL3 _chem_comp.name "(2~{S})-3-[3,5-difluorophenyl)ethyl]-~{N}-(4-methoxyphenyl)-~{N}-methyl-2-[2-(2-methyl-1~{H}-indol-3-yl)ethanoylamino]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H27 F2 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{S})-3-[3,5-bis(fluoranyl)phenyl]-~{N}-(4-methoxyphenyl)-~{N}-methyl-2-[2-(2-methyl-1~{H}-indol-3-yl)ethanoylamino]propanamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-01 _chem_comp.pdbx_modified_date 2026-08-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 491.529 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JL3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9S6O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JL3 C13 C1 C 0 1 N N S N N N -18.909 22.238 1.781 0.358 1.386 -0.089 C13 A1JL3 1 A1JL3 C10 C2 C 0 1 N N N N N N -18.421 23.673 5.360 -1.466 3.249 1.026 C10 A1JL3 2 A1JL3 C11 C3 C 0 1 N N N N N N -18.273 22.777 3.050 -1.127 1.223 -0.285 C11 A1JL3 3 A1JL3 C27 C4 C 0 1 Y N N N N N -18.110 24.378 -2.587 1.862 -3.265 -0.199 C27 A1JL3 4 A1JL3 C28 C5 C 0 1 Y N N N N N -18.282 23.351 -3.529 2.694 -3.739 0.742 C28 A1JL3 5 A1JL3 C29 C6 C 0 1 N N N N N N -17.929 21.903 -3.384 3.936 -3.039 1.230 C29 A1JL3 6 A1JL3 C31 C7 C 0 1 Y N N N N N -19.141 25.196 -4.369 1.089 -5.298 0.535 C31 A1JL3 7 A1JL3 C26 C8 C 0 1 N N N N N N -17.388 24.268 -1.254 1.999 -1.963 -0.944 C26 A1JL3 8 A1JL3 C24 C9 C 0 1 N N N N N N -18.391 23.909 -0.160 1.177 -0.902 -0.258 C24 A1JL3 9 A1JL3 C22 C10 C 0 1 Y N N N N N -19.303 19.904 -0.438 3.191 2.624 -1.351 C22 A1JL3 10 A1JL3 C14 C11 C 0 1 N N N N N N -18.861 20.711 1.879 0.798 2.748 -0.630 C14 A1JL3 11 A1JL3 C15 C12 C 0 1 Y N N N N N -19.762 20.080 0.842 2.270 2.940 -0.370 C15 A1JL3 12 A1JL3 C16 C13 C 0 1 Y N N N N N -21.091 19.878 1.163 2.698 3.432 0.849 C16 A1JL3 13 A1JL3 C17 C14 C 0 1 Y N N N N N -21.901 19.295 0.220 4.050 3.609 1.088 C17 A1JL3 14 A1JL3 C19 C15 C 0 1 Y N N N N N -21.465 19.111 -1.076 4.974 3.292 0.107 C19 A1JL3 15 A1JL3 C20 C16 C 0 1 Y N N N N N -20.156 19.402 -1.399 4.544 2.799 -1.113 C20 A1JL3 16 A1JL3 C01 C17 C 0 1 N N N N N N -25.349 23.461 2.740 -7.978 0.146 0.500 C01 A1JL3 17 A1JL3 C03 C18 C 0 1 Y N N N N N -23.212 22.910 3.589 -6.096 1.496 -0.038 C03 A1JL3 18 A1JL3 C04 C19 C 0 1 Y N N N N N -22.589 24.088 3.116 -5.318 0.590 0.667 C04 A1JL3 19 A1JL3 C05 C20 C 0 1 Y N N N N N -21.209 24.239 3.289 -3.955 0.787 0.775 C05 A1JL3 20 A1JL3 C06 C21 C 0 1 Y N N N N N -20.498 23.196 3.930 -3.364 1.892 0.178 C06 A1JL3 21 A1JL3 C07 C22 C 0 1 Y N N N N N -21.092 22.060 4.390 -4.144 2.799 -0.527 C07 A1JL3 22 A1JL3 C08 C23 C 0 1 Y N N N N N -22.453 21.938 4.248 -5.506 2.598 -0.639 C08 A1JL3 23 A1JL3 C32 C24 C 0 1 Y N N N N N -19.741 26.192 -5.199 0.239 -6.397 0.605 C32 A1JL3 24 A1JL3 C33 C25 C 0 1 Y N N N N N -19.853 27.513 -4.757 -0.873 -6.455 -0.207 C33 A1JL3 25 A1JL3 C34 C26 C 0 1 Y N N N N N -19.236 27.902 -3.568 -1.156 -5.427 -1.095 C34 A1JL3 26 A1JL3 C35 C27 C 0 1 Y N N N N N -18.661 26.937 -2.741 -0.333 -4.339 -1.183 C35 A1JL3 27 A1JL3 C36 C28 C 0 1 Y N N N N N -18.641 25.567 -3.148 0.798 -4.258 -0.368 C36 A1JL3 28 A1JL3 F18 F1 F 0 1 N N N N N N -23.190 19.017 0.530 4.468 4.090 2.280 F18 A1JL3 29 A1JL3 F21 F2 F 0 1 N N N N N N -19.699 19.123 -2.658 5.445 2.484 -2.069 F21 A1JL3 30 A1JL3 N09 N1 N 0 1 N N N N N N -19.075 23.225 4.133 -1.982 2.093 0.288 N09 A1JL3 31 A1JL3 N23 N2 N 0 1 N N N N N N -18.150 22.712 0.647 1.065 0.324 -0.807 N23 A1JL3 32 A1JL3 N30 N3 N 0 1 Y N N N N N -18.935 23.840 -4.556 2.247 -4.951 1.193 N30 A1JL3 33 A1JL3 O02 O1 O 0 1 N N N N N N -24.605 22.651 3.588 -7.438 1.301 -0.144 O02 A1JL3 34 A1JL3 O12 O2 O 0 1 N N N N N N -17.125 22.757 3.224 -1.553 0.310 -0.959 O12 A1JL3 35 A1JL3 O25 O3 O 0 1 N N N N N N -19.332 24.614 -0.023 0.616 -1.152 0.788 O25 A1JL3 36 A1JL3 H1 H1 H 0 1 N N N N N N -19.955 22.571 1.718 0.593 1.325 0.974 H1 A1JL3 37 A1JL3 H101 H2 H 0 0 N N N N N N -17.330 23.592 5.245 -1.351 4.093 0.345 H101 A1JL3 38 A1JL3 H102 H3 H 0 0 N N N N N N -18.692 24.721 5.558 -2.165 3.515 1.819 H102 A1JL3 39 A1JL3 H103 H4 H 0 0 N N N N N N -18.749 23.044 6.201 -0.499 2.999 1.462 H103 A1JL3 40 A1JL3 H291 H5 H 0 0 N N N N N N -18.763 21.368 -2.908 3.701 -2.465 2.127 H291 A1JL3 41 A1JL3 H292 H6 H 0 0 N N N N N N -17.736 21.472 -4.377 4.702 -3.778 1.462 H292 A1JL3 42 A1JL3 H293 H7 H 0 0 N N N N N N -17.028 21.806 -2.761 4.302 -2.366 0.454 H293 A1JL3 43 A1JL3 H261 H8 H 0 0 N N N N N N -16.913 25.230 -1.014 3.046 -1.660 -0.956 H261 A1JL3 44 A1JL3 H262 H9 H 0 0 N N N N N N -16.618 23.485 -1.317 1.647 -2.091 -1.967 H262 A1JL3 45 A1JL3 H221 H10 H 0 0 N N N N N N -18.284 20.156 -0.691 2.856 2.235 -2.301 H221 A1JL3 46 A1JL3 H141 H11 H 0 0 N N N N N N -19.193 20.403 2.881 0.610 2.791 -1.702 H141 A1JL3 47 A1JL3 H142 H12 H 0 0 N N N N N N -17.828 20.371 1.715 0.235 3.537 -0.130 H142 A1JL3 48 A1JL3 H161 H13 H 0 0 N N N N N N -21.481 20.170 2.127 1.977 3.680 1.614 H161 A1JL3 49 A1JL3 H191 H14 H 0 0 N N N N N N -22.143 18.742 -1.831 6.029 3.430 0.293 H191 A1JL3 50 A1JL3 H011 H15 H 0 0 N N N N N N -26.412 23.186 2.808 -7.518 -0.751 0.084 H011 A1JL3 51 A1JL3 H012 H16 H 0 0 N N N N N N -25.223 24.513 3.034 -7.773 0.197 1.570 H012 A1JL3 52 A1JL3 H013 H17 H 0 0 N N N N N N -25.001 23.326 1.705 -9.056 0.110 0.338 H013 A1JL3 53 A1JL3 H041 H18 H 0 0 N N N N N N -23.169 24.858 2.629 -5.777 -0.270 1.132 H041 A1JL3 54 A1JL3 H051 H19 H 0 0 N N N N N N -20.700 25.127 2.943 -3.349 0.081 1.325 H051 A1JL3 55 A1JL3 H071 H20 H 0 0 N N N N N N -20.510 21.277 4.853 -3.685 3.659 -0.991 H071 A1JL3 56 A1JL3 H081 H21 H 0 0 N N N N N N -22.949 21.070 4.656 -6.112 3.300 -1.192 H081 A1JL3 57 A1JL3 H321 H22 H 0 0 N N N N N N -20.111 25.922 -6.177 0.451 -7.202 1.292 H321 A1JL3 58 A1JL3 H331 H23 H 0 0 N N N N N N -20.416 28.231 -5.335 -1.531 -7.310 -0.151 H331 A1JL3 59 A1JL3 H341 H24 H 0 0 N N N N N N -19.204 28.945 -3.289 -2.031 -5.488 -1.724 H341 A1JL3 60 A1JL3 H351 H25 H 0 0 N N N N N N -18.231 27.225 -1.793 -0.559 -3.543 -1.877 H351 A1JL3 61 A1JL3 H231 H26 H 0 0 N N N N N N -17.364 22.154 0.381 1.453 0.502 -1.678 H231 A1JL3 62 A1JL3 H301 H27 H 0 0 N N N N N N -19.237 23.314 -5.351 2.682 -5.486 1.875 H301 A1JL3 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JL3 O02 C01 SING N N 1 A1JL3 C03 O02 SING N N 2 A1JL3 C04 C03 DOUB Y N 3 A1JL3 C05 C04 SING Y N 4 A1JL3 C06 C05 DOUB Y N 5 A1JL3 C08 C07 DOUB Y N 6 A1JL3 C07 C06 SING Y N 7 A1JL3 N09 C06 SING N N 8 A1JL3 C10 N09 SING N N 9 A1JL3 C11 N09 SING N N 10 A1JL3 O12 C11 DOUB N N 11 A1JL3 C13 C11 SING N N 12 A1JL3 C15 C14 SING N N 13 A1JL3 C16 C15 DOUB Y N 14 A1JL3 C17 C16 SING Y N 15 A1JL3 F18 C17 SING N N 16 A1JL3 C19 C17 DOUB Y N 17 A1JL3 C20 C19 SING Y N 18 A1JL3 F21 C20 SING N N 19 A1JL3 C22 C20 DOUB Y N 20 A1JL3 C14 C13 SING N N 21 A1JL3 N23 C13 SING N N 22 A1JL3 C24 N23 SING N N 23 A1JL3 O25 C24 DOUB N N 24 A1JL3 C26 C24 SING N N 25 A1JL3 C27 C26 SING N N 26 A1JL3 C28 C27 DOUB Y N 27 A1JL3 C29 C28 SING N N 28 A1JL3 N30 C28 SING Y N 29 A1JL3 C31 N30 SING Y N 30 A1JL3 C32 C31 DOUB Y N 31 A1JL3 C33 C32 SING Y N 32 A1JL3 C34 C33 DOUB Y N 33 A1JL3 C35 C34 SING Y N 34 A1JL3 C36 C35 DOUB Y N 35 A1JL3 C03 C08 SING Y N 36 A1JL3 C15 C22 SING Y N 37 A1JL3 C27 C36 SING Y N 38 A1JL3 C31 C36 SING Y N 39 A1JL3 C13 H1 SING N N 40 A1JL3 C10 H101 SING N N 41 A1JL3 C10 H102 SING N N 42 A1JL3 C10 H103 SING N N 43 A1JL3 C29 H291 SING N N 44 A1JL3 C29 H292 SING N N 45 A1JL3 C29 H293 SING N N 46 A1JL3 C26 H261 SING N N 47 A1JL3 C26 H262 SING N N 48 A1JL3 C22 H221 SING N N 49 A1JL3 C14 H141 SING N N 50 A1JL3 C14 H142 SING N N 51 A1JL3 C16 H161 SING N N 52 A1JL3 C19 H191 SING N N 53 A1JL3 C01 H011 SING N N 54 A1JL3 C01 H012 SING N N 55 A1JL3 C01 H013 SING N N 56 A1JL3 C04 H041 SING N N 57 A1JL3 C05 H051 SING N N 58 A1JL3 C07 H071 SING N N 59 A1JL3 C08 H081 SING N N 60 A1JL3 C32 H321 SING N N 61 A1JL3 C33 H331 SING N N 62 A1JL3 C34 H341 SING N N 63 A1JL3 C35 H351 SING N N 64 A1JL3 N23 H231 SING N N 65 A1JL3 N30 H301 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JL3 InChI InChI 1.06 "InChI=1S/C28H27F2N3O3/c1-17-24(23-6-4-5-7-25(23)31-17)16-27(34)32-26(14-18-12-19(29)15-20(30)13-18)28(35)33(2)21-8-10-22(36-3)11-9-21/h4-13,15,26,31H,14,16H2,1-3H3,(H,32,34)/t26-/m0/s1" A1JL3 InChIKey InChI 1.06 YNRPSWUWNXYHJJ-SANMLTNESA-N A1JL3 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1)N(C)C(=O)[C@H](Cc2cc(F)cc(F)c2)NC(=O)Cc3c(C)[nH]c4ccccc34" A1JL3 SMILES CACTVS 3.385 "COc1ccc(cc1)N(C)C(=O)[CH](Cc2cc(F)cc(F)c2)NC(=O)Cc3c(C)[nH]c4ccccc34" A1JL3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c2ccccc2[nH]1)CC(=O)N[C@@H](Cc3cc(cc(c3)F)F)C(=O)N(C)c4ccc(cc4)OC" A1JL3 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c2ccccc2[nH]1)CC(=O)NC(Cc3cc(cc(c3)F)F)C(=O)N(C)c4ccc(cc4)OC" # _pdbx_chem_comp_identifier.comp_id A1JL3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-3-[3,5-bis(fluoranyl)phenyl]-~{N}-(4-methoxyphenyl)-~{N}-methyl-2-[2-(2-methyl-1~{H}-indol-3-yl)ethanoylamino]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JL3 "Create component" 2025-08-01 PDBE A1JL3 "Modify name" 2025-08-12 PDBE A1JL3 "Initial release" 2026-08-12 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JL3 _pdbx_chem_comp_synonyms.name "(2~{S})-3-[3,5-bis(fluoranyl)phenyl]-~{N}-(4-methoxyphenyl)-~{N}-methyl-2-[2-(2-methyl-1~{H}-indol-3-yl)ethanoylamino]propanamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #