data_A1JLI # _chem_comp.id A1JLI _chem_comp.name "~{N}-[[2-[(cyclobutylmethylamino)methyl]-1~{H}-indol-6-yl]methyl]-4-oxidanylidene-3~{H}-pyrido[1,2-a]pyrimidin-5-ium-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H26 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2025-07-23 _chem_comp.pdbx_modified_date 2026-06-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 416.496 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JLI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JLI O1 O1 O 0 1 N N N N N N ? ? ? -3.526 -2.933 -1.032 O1 A1JLI 1 A1JLI C2 C1 C 0 1 N N N N N N ? ? ? -3.370 -1.815 -0.582 C2 A1JLI 2 A1JLI N3 N1 N 0 1 N N N N N N ? ? ? -2.173 -1.451 -0.081 N3 A1JLI 3 A1JLI C4 C2 C 0 1 N N N N N N ? ? ? -1.059 -2.403 -0.079 C4 A1JLI 4 A1JLI C5 C3 C 0 1 Y N N N N N ? ? ? 0.156 -1.753 0.530 C5 A1JLI 5 A1JLI C6 C4 C 0 1 Y N N N N N ? ? ? 0.373 -1.849 1.897 C6 A1JLI 6 A1JLI C7 C5 C 0 1 Y N N N N N ? ? ? 1.470 -1.266 2.468 C7 A1JLI 7 A1JLI C8 C6 C 0 1 Y N N N N N ? ? ? 2.379 -0.570 1.671 C8 A1JLI 8 A1JLI C9 C7 C 0 1 Y N N N N N ? ? ? 3.623 0.155 1.940 C9 A1JLI 9 A1JLI C10 C8 C 0 1 Y N N N N N ? ? ? 4.065 0.627 0.763 C10 A1JLI 10 A1JLI C11 C9 C 0 1 N N N N N N ? ? ? 5.322 1.436 0.573 C11 A1JLI 11 A1JLI N12 N2 N 0 1 N N N N N N ? ? ? 6.427 0.543 0.197 N12 A1JLI 12 A1JLI C13 C10 C 0 1 N N N N N N ? ? ? 7.671 1.299 0.002 C13 A1JLI 13 A1JLI C14 C11 C 0 1 N N N N N N ? ? ? 8.796 0.338 -0.388 C14 A1JLI 14 A1JLI C15 C12 C 0 1 N N N N N N ? ? ? 10.173 1.013 -0.497 C15 A1JLI 15 A1JLI C16 C13 C 0 1 N N N N N N ? ? ? 10.418 0.136 -1.736 C16 A1JLI 16 A1JLI C17 C14 C 0 1 N N N N N N ? ? ? 8.890 0.080 -1.901 C17 A1JLI 17 A1JLI N18 N3 N 0 1 Y N N N N N ? ? ? 3.206 0.264 -0.238 N18 A1JLI 18 A1JLI C19 C15 C 0 1 Y N N N N N ? ? ? 2.163 -0.469 0.284 C19 A1JLI 19 A1JLI C20 C16 C 0 1 Y N N N N N ? ? ? 1.043 -1.074 -0.277 C20 A1JLI 20 A1JLI C21 C17 C 0 1 N N N N N N ? ? ? -4.492 -0.853 -0.589 C21 A1JLI 21 A1JLI C22 C18 C 0 1 N N N N N N ? ? ? -5.831 -1.260 -1.156 C22 A1JLI 22 A1JLI C23 C19 C 0 1 N N N N N N ? ? ? -6.894 -0.421 -0.478 C23 A1JLI 23 A1JLI O24 O2 O 0 1 N N N N N N ? ? ? -7.957 -0.899 -0.143 O24 A1JLI 24 A1JLI N25 N4 N 1 1 Y N N N N N ? ? ? -6.606 0.898 -0.259 N25 A1JLI 25 A1JLI C26 C20 C 0 1 Y N N N N N ? ? ? -7.591 1.787 -0.224 C26 A1JLI 26 A1JLI C27 C21 C 0 1 Y N N N N N ? ? ? -7.333 3.126 -0.012 C27 A1JLI 27 A1JLI C28 C22 C 0 1 Y N N N N N ? ? ? -6.021 3.548 0.166 C28 A1JLI 28 A1JLI C29 C23 C 0 1 Y N N N N N ? ? ? -5.006 2.606 0.129 C29 A1JLI 29 A1JLI C30 C24 C 0 1 Y N N N N N ? ? ? -5.324 1.263 -0.085 C30 A1JLI 30 A1JLI N31 N5 N 0 1 N N N N N N ? ? ? -4.327 0.338 -0.103 N31 A1JLI 31 A1JLI H3 H1 H 0 1 N N N N N N ? ? ? -2.049 -0.559 0.279 H3 A1JLI 32 A1JLI H4B H2 H 0 1 N N N N N N ? ? ? -1.333 -3.281 0.505 H4B A1JLI 33 A1JLI H4A H3 H 0 1 N N N N N N ? ? ? -0.836 -2.703 -1.103 H4A A1JLI 34 A1JLI H6 H4 H 0 1 N N N N N N ? ? ? -0.330 -2.388 2.515 H6 A1JLI 35 A1JLI H7 H5 H 0 1 N N N N N N ? ? ? 1.633 -1.345 3.533 H7 A1JLI 36 A1JLI H9 H6 H 0 1 N N N N N N ? ? ? 4.096 0.285 2.902 H9 A1JLI 37 A1JLI H11B H7 H 0 0 N N N N N N ? ? ? 5.165 2.171 -0.216 H11B A1JLI 38 A1JLI H11A H8 H 0 0 N N N N N N ? ? ? 5.569 1.948 1.503 H11A A1JLI 39 A1JLI H12A H9 H 0 0 N N N N N N ? ? ? 6.550 -0.187 0.882 H12A A1JLI 40 A1JLI H13A H11 H 0 0 N N N N N N ? ? ? 7.530 2.033 -0.791 H13A A1JLI 41 A1JLI H13B H12 H 0 0 N N N N N N ? ? ? 7.935 1.810 0.928 H13B A1JLI 42 A1JLI H14 H13 H 0 1 N N N N N N ? ? ? 8.802 -0.572 0.213 H14 A1JLI 43 A1JLI H15A H14 H 0 0 N N N N N N ? ? ? 10.121 2.079 -0.720 H15A A1JLI 44 A1JLI H15B H15 H 0 0 N N N N N N ? ? ? 10.838 0.787 0.338 H15B A1JLI 45 A1JLI H16B H16 H 0 0 N N N N N N ? ? ? 10.926 0.658 -2.547 H16B A1JLI 46 A1JLI H16A H17 H 0 0 N N N N N N ? ? ? 10.869 -0.829 -1.506 H16A A1JLI 47 A1JLI H17B H18 H 0 0 N N N N N N ? ? ? 8.518 -0.900 -2.201 H17B A1JLI 48 A1JLI H17A H19 H 0 0 N N N N N N ? ? ? 8.486 0.891 -2.507 H17A A1JLI 49 A1JLI H18 H20 H 0 1 N N N N N N ? ? ? 3.314 0.489 -1.175 H18 A1JLI 50 A1JLI H20 H21 H 0 1 N N N N N N ? ? ? 0.865 -1.006 -1.340 H20 A1JLI 51 A1JLI H22 H22 H 0 1 N N N N N N ? ? ? -5.848 -1.079 -2.231 H22 A1JLI 52 A1JLI H1 H23 H 0 1 N N N N N N ? ? ? -6.011 -2.317 -0.957 H1 A1JLI 53 A1JLI H26 H24 H 0 1 N N N N N N ? ? ? -8.610 1.457 -0.363 H26 A1JLI 54 A1JLI H27 H25 H 0 1 N N N N N N ? ? ? -8.143 3.840 0.015 H27 A1JLI 55 A1JLI H28 H26 H 0 1 N N N N N N ? ? ? -5.797 4.591 0.331 H28 A1JLI 56 A1JLI H29 H27 H 0 1 N N N N N N ? ? ? -3.978 2.908 0.264 H29 A1JLI 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JLI C11 N12 SING N N 1 A1JLI C11 C10 SING N N 2 A1JLI C13 N12 SING N N 3 A1JLI C13 C14 SING N N 4 A1JLI C17 C14 SING N N 5 A1JLI C17 C16 SING N N 6 A1JLI C28 C27 DOUB Y N 7 A1JLI C28 C29 SING Y N 8 A1JLI C9 C10 DOUB Y N 9 A1JLI C9 C8 SING Y N 10 A1JLI C10 N18 SING Y N 11 A1JLI C27 C26 SING Y N 12 A1JLI C29 C30 DOUB Y N 13 A1JLI C14 C15 SING N N 14 A1JLI C16 C15 SING N N 15 A1JLI C8 C7 DOUB Y N 16 A1JLI C8 C19 SING Y N 17 A1JLI N18 C19 SING Y N 18 A1JLI C7 C6 SING Y N 19 A1JLI C26 N25 DOUB Y N 20 A1JLI C30 N25 SING Y N 21 A1JLI C30 N31 SING N N 22 A1JLI C19 C20 DOUB Y N 23 A1JLI N25 C23 SING N N 24 A1JLI N31 C21 DOUB N N 25 A1JLI C6 C5 DOUB Y N 26 A1JLI C20 C5 SING Y N 27 A1JLI C5 C4 SING N N 28 A1JLI C23 O24 DOUB N N 29 A1JLI C23 C22 SING N N 30 A1JLI C21 C22 SING N N 31 A1JLI C21 C2 SING N N 32 A1JLI N3 C4 SING N N 33 A1JLI N3 C2 SING N N 34 A1JLI C2 O1 DOUB N N 35 A1JLI N3 H3 SING N N 36 A1JLI C4 H4B SING N N 37 A1JLI C4 H4A SING N N 38 A1JLI C6 H6 SING N N 39 A1JLI C7 H7 SING N N 40 A1JLI C9 H9 SING N N 41 A1JLI C11 H11B SING N N 42 A1JLI C11 H11A SING N N 43 A1JLI N12 H12A SING N N 44 A1JLI C13 H13A SING N N 45 A1JLI C13 H13B SING N N 46 A1JLI C14 H14 SING N N 47 A1JLI C15 H15A SING N N 48 A1JLI C15 H15B SING N N 49 A1JLI C16 H16B SING N N 50 A1JLI C16 H16A SING N N 51 A1JLI C17 H17B SING N N 52 A1JLI C17 H17A SING N N 53 A1JLI N18 H18 SING N N 54 A1JLI C20 H20 SING N N 55 A1JLI C22 H22 SING N N 56 A1JLI C22 H1 SING N N 57 A1JLI C26 H26 SING N N 58 A1JLI C27 H27 SING N N 59 A1JLI C28 H28 SING N N 60 A1JLI C29 H29 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JLI InChI InChI 1.06 "InChI=1S/C24H25N5O2/c30-23-12-21(28-22-6-1-2-9-29(22)23)24(31)26-14-17-7-8-18-11-19(27-20(18)10-17)15-25-13-16-4-3-5-16/h1-2,6-11,16,25,27H,3-5,12-15H2/p+1" A1JLI InChIKey InChI 1.06 VMUOJHYOXXOXGL-UHFFFAOYSA-O A1JLI SMILES_CANONICAL CACTVS 3.385 "O=C1CC(=Nc2cccc[n+]12)C(=O)NCc3ccc4cc(CNCC5CCC5)[nH]c4c3" A1JLI SMILES CACTVS 3.385 "O=C1CC(=Nc2cccc[n+]12)C(=O)NCc3ccc4cc(CNCC5CCC5)[nH]c4c3" A1JLI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc[n+]2c(c1)N=C(CC2=O)C(=O)NCc3ccc4cc([nH]c4c3)CNCC5CCC5" A1JLI SMILES "OpenEye OEToolkits" 2.0.7 "c1cc[n+]2c(c1)N=C(CC2=O)C(=O)NCc3ccc4cc([nH]c4c3)CNCC5CCC5" # _pdbx_chem_comp_identifier.comp_id A1JLI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[2-[(cyclobutylmethylamino)methyl]-1~{H}-indol-6-yl]methyl]-4-oxidanylidene-3~{H}-pyrido[1,2-a]pyrimidin-5-ium-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JLI "Create component" 2025-07-23 PDBE A1JLI "Modify coordinates" 2026-06-15 RCSB A1JLI "Initial release" 2026-06-24 RCSB #