data_A1JM0 # _chem_comp.id A1JM0 _chem_comp.name "(2~{S},3~{S},4~{R},5~{R})-2-(1,3-benzothiazol-2-ylsulfanylmethyl)-5-[6-(methylamino)purin-9-yl]oxolane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H18 N6 O3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-08 _chem_comp.pdbx_modified_date 2026-01-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 430.504 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JM0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SAL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JM0 C9 C1 C 0 1 Y N N N N N 24.902 -18.348 5.353 -2.647 1.218 -0.572 C9 A1JM0 1 A1JM0 C3 C2 C 0 1 Y N N N N N 27.422 -17.964 2.927 -6.167 1.508 -0.137 C3 A1JM0 2 A1JM0 C7 C3 C 0 1 Y N N N N N 25.369 -19.084 3.349 -4.303 0.035 0.275 C7 A1JM0 3 A1JM0 C5 C4 C 0 1 Y N N N N N 26.401 -19.378 1.427 -6.440 -0.536 0.900 C5 A1JM0 4 A1JM0 C1 C5 C 0 1 N N N N N N 28.359 -16.068 4.157 -8.142 2.938 -0.512 C1 A1JM0 5 A1JM0 C11 C6 C 0 1 Y N N N N N 26.348 -18.219 3.807 -4.789 1.251 -0.235 C11 A1JM0 6 A1JM0 C12 C7 C 0 1 N N R N N N 23.210 -19.943 4.362 -2.004 -1.015 0.410 C12 A1JM0 7 A1JM0 C14 C8 C 0 1 N N S N N N 21.073 -19.629 5.261 0.213 -1.610 0.398 C14 A1JM0 8 A1JM0 C15 C9 C 0 1 N N N N N N 20.783 -18.706 6.430 1.617 -1.144 0.007 C15 A1JM0 9 A1JM0 C17 C10 C 0 1 Y N N N N N 18.910 -17.663 8.205 3.938 0.130 0.698 C17 A1JM0 10 A1JM0 C19 C11 C 0 1 Y N N N N N 17.843 -16.076 9.294 6.017 1.013 0.630 C19 A1JM0 11 A1JM0 C20 C12 C 0 1 Y N N N N N 16.778 -15.317 9.774 7.178 1.686 1.068 C20 A1JM0 12 A1JM0 C21 C13 C 0 1 Y N N N N N 17.035 -14.216 10.578 8.248 1.846 0.224 C21 A1JM0 13 A1JM0 C22 C14 C 0 1 Y N N N N N 18.334 -13.866 10.905 8.207 1.350 -1.071 C22 A1JM0 14 A1JM0 C23 C15 C 0 1 Y N N N N N 19.405 -14.609 10.436 7.084 0.690 -1.519 C23 A1JM0 15 A1JM0 C24 C16 C 0 1 Y N N N N N 19.150 -15.712 9.631 5.989 0.518 -0.677 C24 A1JM0 16 A1JM0 C26 C17 C 0 1 N N S N N N 21.567 -21.018 5.665 -0.408 -2.455 -0.735 C26 A1JM0 17 A1JM0 C28 C18 C 0 1 N N R N N N 23.085 -20.881 5.556 -1.900 -2.056 -0.727 C28 A1JM0 18 A1JM0 N10 N1 N 0 1 Y N N N N N 26.039 -17.760 5.078 -3.728 1.923 -0.742 N10 A1JM0 19 A1JM0 N18 N2 N 0 1 Y N N N N N 17.734 -17.198 8.475 4.877 0.771 1.308 N18 A1JM0 20 A1JM0 N2 N3 N 0 1 N N N N N N 28.459 -17.186 3.247 -6.703 2.688 -0.623 N2 A1JM0 21 A1JM0 N4 N4 N 0 1 Y N N N N N 27.418 -18.566 1.728 -6.943 0.592 0.433 N4 A1JM0 22 A1JM0 N6 N5 N 0 1 Y N N N N N 25.338 -19.699 2.166 -5.156 -0.819 0.831 N6 A1JM0 23 A1JM0 N8 N6 N 0 1 Y N N N N N 24.439 -19.163 4.354 -2.950 0.044 0.051 N8 A1JM0 24 A1JM0 O13 O1 O 0 1 N N N N N N 22.122 -19.048 4.454 -0.671 -0.477 0.540 O13 A1JM0 25 A1JM0 O27 O2 O 0 1 N N N N N N 21.059 -22.013 4.786 -0.262 -3.850 -0.458 O27 A1JM0 26 A1JM0 O29 O3 O 0 1 N N N N N N 23.715 -22.123 5.270 -2.721 -3.191 -0.445 O29 A1JM0 27 A1JM0 S16 S1 S 0 1 N N N N N N 19.197 -19.075 7.218 2.379 -0.283 1.406 S16 A1JM0 28 A1JM0 S25 S2 S 0 1 Y N N N N N 20.271 -16.814 8.898 4.433 -0.265 -0.942 S25 A1JM0 29 A1JM0 H9 H1 H 0 1 N N N N N N 24.376 -18.203 6.285 -1.657 1.517 -0.884 H9 A1JM0 30 A1JM0 H5 H2 H 0 1 N N N N N N 26.446 -19.838 0.451 -7.107 -1.252 1.358 H5 A1JM0 31 A1JM0 H1A H3 H 0 1 N N N N N N 29.343 -15.587 4.258 -8.688 2.161 -1.047 H1A A1JM0 32 A1JM0 H1B H4 H 0 1 N N N N N N 27.634 -15.340 3.765 -8.433 2.930 0.538 H1B A1JM0 33 A1JM0 H1C H5 H 0 1 N N N N N N 28.024 -16.426 5.142 -8.376 3.910 -0.947 H1C A1JM0 34 A1JM0 H12 H6 H 0 1 N N N N N N 23.141 -20.535 3.438 -2.311 -1.498 1.338 H12 A1JM0 35 A1JM0 H14 H7 H 0 1 N N N N N N 20.158 -19.740 4.660 0.249 -2.184 1.324 H14 A1JM0 36 A1JM0 H15A H8 H 0 0 N N N N N N 21.583 -18.818 7.176 2.225 -2.009 -0.262 H15A A1JM0 37 A1JM0 H15B H9 H 0 0 N N N N N N 20.764 -17.668 6.065 1.552 -0.467 -0.844 H15B A1JM0 38 A1JM0 H20 H10 H 0 1 N N N N N N 15.762 -15.583 9.523 7.224 2.078 2.073 H20 A1JM0 39 A1JM0 H21 H11 H 0 1 N N N N N N 16.212 -13.625 10.953 9.130 2.363 0.571 H21 A1JM0 40 A1JM0 H22 H12 H 0 1 N N N N N N 18.514 -13.005 11.532 9.055 1.481 -1.727 H22 A1JM0 41 A1JM0 H23 H13 H 0 1 N N N N N N 20.418 -14.336 10.691 7.054 0.304 -2.527 H23 A1JM0 42 A1JM0 H26 H14 H 0 1 N N N N N N 21.286 -21.224 6.708 0.051 -2.207 -1.692 H26 A1JM0 43 A1JM0 H28 H15 H 0 1 N N N N N N 23.494 -20.409 6.461 -2.181 -1.608 -1.681 H28 A1JM0 44 A1JM0 H2 H16 H 0 1 N N N N N N 28.795 -16.808 2.384 -6.126 3.349 -1.036 H2 A1JM0 45 A1JM0 H27 H17 H 0 1 N N N N N N 21.378 -22.866 5.055 -0.635 -4.427 -1.138 H27 A1JM0 46 A1JM0 H29 H18 H 0 1 N N N N N N 24.655 -21.996 5.210 -2.648 -3.901 -1.097 H29 A1JM0 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JM0 C1 N2 SING N N 1 A1JM0 N2 C3 SING N N 2 A1JM0 C3 N4 SING Y N 3 A1JM0 N4 C5 DOUB Y N 4 A1JM0 C5 N6 SING Y N 5 A1JM0 N6 C7 DOUB Y N 6 A1JM0 C7 N8 SING Y N 7 A1JM0 N8 C9 SING Y N 8 A1JM0 C9 N10 DOUB Y N 9 A1JM0 N10 C11 SING Y N 10 A1JM0 N8 C12 SING N N 11 A1JM0 C12 O13 SING N N 12 A1JM0 O13 C14 SING N N 13 A1JM0 C14 C15 SING N N 14 A1JM0 C15 S16 SING N N 15 A1JM0 S16 C17 SING N N 16 A1JM0 C17 N18 DOUB Y N 17 A1JM0 N18 C19 SING Y N 18 A1JM0 C19 C20 SING Y N 19 A1JM0 C20 C21 DOUB Y N 20 A1JM0 C21 C22 SING Y N 21 A1JM0 C22 C23 DOUB Y N 22 A1JM0 C23 C24 SING Y N 23 A1JM0 C24 S25 SING Y N 24 A1JM0 C14 C26 SING N N 25 A1JM0 C26 O27 SING N N 26 A1JM0 C26 C28 SING N N 27 A1JM0 C28 O29 SING N N 28 A1JM0 C11 C3 DOUB Y N 29 A1JM0 C28 C12 SING N N 30 A1JM0 C11 C7 SING Y N 31 A1JM0 S25 C17 SING Y N 32 A1JM0 C24 C19 DOUB Y N 33 A1JM0 C9 H9 SING N N 34 A1JM0 C5 H5 SING N N 35 A1JM0 C1 H1A SING N N 36 A1JM0 C1 H1B SING N N 37 A1JM0 C1 H1C SING N N 38 A1JM0 C12 H12 SING N N 39 A1JM0 C14 H14 SING N N 40 A1JM0 C15 H15A SING N N 41 A1JM0 C15 H15B SING N N 42 A1JM0 C20 H20 SING N N 43 A1JM0 C21 H21 SING N N 44 A1JM0 C22 H22 SING N N 45 A1JM0 C23 H23 SING N N 46 A1JM0 C26 H26 SING N N 47 A1JM0 C28 H28 SING N N 48 A1JM0 N2 H2 SING N N 49 A1JM0 O27 H27 SING N N 50 A1JM0 O29 H29 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JM0 InChI InChI 1.06 "InChI=1S/C18H18N6O3S2/c1-19-15-12-16(21-7-20-15)24(8-22-12)17-14(26)13(25)10(27-17)6-28-18-23-9-4-2-3-5-11(9)29-18/h2-5,7-8,10,13-14,17,25-26H,6H2,1H3,(H,19,20,21)/t10-,13-,14-,17-/m1/s1" A1JM0 InChIKey InChI 1.06 LXTIEQOZGSBTHB-IWCJZZDYSA-N A1JM0 SMILES_CANONICAL CACTVS 3.385 "CNc1ncnc2n(cnc12)[C@@H]3O[C@H](CSc4sc5ccccc5n4)[C@@H](O)[C@H]3O" A1JM0 SMILES CACTVS 3.385 "CNc1ncnc2n(cnc12)[CH]3O[CH](CSc4sc5ccccc5n4)[CH](O)[CH]3O" A1JM0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CSc4nc5ccccc5s4)O)O" A1JM0 SMILES "OpenEye OEToolkits" 2.0.7 "CNc1c2c(ncn1)n(cn2)C3C(C(C(O3)CSc4nc5ccccc5s4)O)O" # _pdbx_chem_comp_identifier.comp_id A1JM0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S},4~{R},5~{R})-2-(1,3-benzothiazol-2-ylsulfanylmethyl)-5-[6-(methylamino)purin-9-yl]oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JM0 "Create component" 2025-08-08 PDBE A1JM0 "Initial release" 2026-01-21 RCSB #