data_A1JM1 # _chem_comp.id A1JM1 _chem_comp.name "(1~{R},2~{S},3~{R},5~{S})-3-(6-aminopurin-9-yl)-5-(1,3-benzothiazol-2-ylsulfanylmethyl)cyclopentane-1,2-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H18 N6 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-08 _chem_comp.pdbx_modified_date 2026-01-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.505 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JM1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SAM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JM1 C2 C1 C 0 1 Y N N N N N 27.291 1.980 3.251 -6.784 1.560 -0.052 C2 A1JM1 1 A1JM1 C8 C2 C 0 1 Y N N N N N 24.876 1.787 5.798 -3.450 1.042 -1.181 C8 A1JM1 2 A1JM1 C4 C3 C 0 1 Y N N N N N 26.109 0.599 1.817 -6.725 -0.058 1.594 C4 A1JM1 3 A1JM1 C6 C4 C 0 1 Y N N N N N 25.191 0.997 3.786 -4.815 0.227 0.346 C6 A1JM1 4 A1JM1 C10 C5 C 0 1 Y N N N N N 26.242 1.804 4.177 -5.457 1.241 -0.384 C10 A1JM1 5 A1JM1 C11 C6 C 0 1 N N R N N N 23.027 0.273 4.897 -2.504 -0.802 0.259 C11 A1JM1 6 A1JM1 C12 C7 C 0 1 N N N N N N 21.820 1.204 5.034 -1.257 -0.022 0.742 C12 A1JM1 7 A1JM1 C13 C8 C 0 1 N N S N N N 20.679 0.265 5.447 -0.119 -1.059 0.575 C13 A1JM1 8 A1JM1 C14 C9 C 0 1 N N N N N N 19.702 0.934 6.403 1.233 -0.353 0.440 C14 A1JM1 9 A1JM1 C16 C10 C 0 1 Y N N N N N 19.479 2.527 8.687 3.956 -0.530 0.240 C16 A1JM1 10 A1JM1 C18 C11 C 0 1 Y N N N N N 17.705 3.680 9.297 6.144 0.001 0.050 C18 A1JM1 11 A1JM1 C19 C12 C 0 1 Y N N N N N 16.362 4.041 9.419 7.540 -0.180 -0.048 C19 A1JM1 12 A1JM1 C20 C13 C 0 1 Y N N N N N 16.017 5.136 10.198 8.376 0.903 -0.151 C20 A1JM1 13 A1JM1 C21 C14 C 0 1 Y N N N N N 16.991 5.874 10.855 7.863 2.192 -0.160 C21 A1JM1 14 A1JM1 C22 C15 C 0 1 Y N N N N N 18.330 5.531 10.746 6.504 2.392 -0.066 C22 A1JM1 15 A1JM1 C23 C16 C 0 1 Y N N N N N 18.675 4.434 9.967 5.641 1.305 0.040 C23 A1JM1 16 A1JM1 C25 C17 C 0 1 N N R N N N 21.342 -1.009 6.024 -0.472 -1.802 -0.729 C25 A1JM1 17 A1JM1 C27 C18 C 0 1 N N S N N N 22.844 -0.701 6.063 -1.989 -1.639 -0.931 C27 A1JM1 18 A1JM1 N1 N1 N 0 1 N N N N N N 28.364 2.749 3.477 -7.470 2.546 -0.740 N1 A1JM1 19 A1JM1 N17 N2 N 0 1 Y N N N N N 18.191 2.593 8.571 5.179 -0.933 0.165 N17 A1JM1 20 A1JM1 N3 N3 N 0 1 Y N N N N N 27.189 1.350 2.059 -7.369 0.888 0.935 N3 A1JM1 21 A1JM1 N5 N4 N 0 1 Y N N N N N 25.060 0.361 2.613 -5.481 -0.390 1.317 N5 A1JM1 22 A1JM1 N7 N5 N 0 1 Y N N N N N 24.300 0.985 4.840 -3.552 0.124 -0.178 N7 A1JM1 23 A1JM1 N9 N6 N 0 1 Y N N N N N 26.030 2.299 5.457 -4.568 1.696 -1.300 N9 A1JM1 24 A1JM1 O26 O1 O 0 1 N N N N N N 21.059 -2.158 5.233 -0.140 -3.187 -0.609 O26 A1JM1 25 A1JM1 O28 O2 O 0 1 N N N N N N 23.626 -1.876 5.883 -2.622 -2.920 -0.939 O28 A1JM1 26 A1JM1 S15 S1 S 0 1 N N N N N N 20.505 1.300 7.986 2.556 -1.588 0.395 S15 A1JM1 27 A1JM1 S24 S2 S 0 1 Y N N N N N 20.248 3.751 9.671 3.886 1.225 0.174 S24 A1JM1 28 A1JM1 H8 H1 H 0 1 N N N N N N 24.412 1.978 6.755 -2.570 1.204 -1.786 H8 A1JM1 29 A1JM1 H4 H2 H 0 1 N N N N N N 26.080 0.120 0.849 -7.237 -0.578 2.389 H4 A1JM1 30 A1JM1 H11 H3 H 0 1 N N N N N N 22.904 -0.297 3.964 -2.877 -1.453 1.049 H11 A1JM1 31 A1JM1 H12A H4 H 0 0 N N N N N N 21.999 1.967 5.806 -1.080 0.851 0.113 H12A A1JM1 32 A1JM1 H12B H5 H 0 0 N N N N N N 21.595 1.697 4.077 -1.364 0.269 1.787 H12B A1JM1 33 A1JM1 H13 H6 H 0 1 N N N N N N 20.129 -0.022 4.539 -0.105 -1.749 1.418 H13 A1JM1 34 A1JM1 H14A H7 H 0 0 N N N N N N 19.343 1.872 5.955 1.248 0.229 -0.481 H14A A1JM1 35 A1JM1 H14B H8 H 0 0 N N N N N N 18.849 0.261 6.577 1.383 0.310 1.292 H14B A1JM1 36 A1JM1 H19 H9 H 0 1 N N N N N N 15.597 3.472 8.911 7.953 -1.178 -0.041 H19 A1JM1 37 A1JM1 H20 H10 H 0 1 N N N N N N 14.979 5.417 10.294 9.443 0.751 -0.225 H20 A1JM1 38 A1JM1 H21 H11 H 0 1 N N N N N N 16.704 6.723 11.457 8.530 3.038 -0.241 H21 A1JM1 39 A1JM1 H22 H12 H 0 1 N N N N N N 19.089 6.105 11.256 6.106 3.396 -0.073 H22 A1JM1 40 A1JM1 H25 H13 H 0 1 N N N N N N 20.983 -1.156 7.053 0.066 -1.361 -1.568 H25 A1JM1 41 A1JM1 H27 H14 H 0 1 N N N N N N 23.093 -0.198 7.009 -2.188 -1.119 -1.868 H27 A1JM1 42 A1JM1 H1A H15 H 0 1 N N N N N N 28.960 2.735 2.674 -8.387 2.753 -0.504 H1A A1JM1 43 A1JM1 H1B H16 H 0 1 N N N N N N 28.069 3.688 3.656 -7.032 3.028 -1.459 H1B A1JM1 44 A1JM1 H26 H17 H 0 1 N N N N N N 21.481 -2.918 5.616 -0.340 -3.709 -1.399 H26 A1JM1 45 A1JM1 H28 H18 H 0 1 N N N N N N 24.548 -1.651 5.912 -2.325 -3.501 -1.652 H28 A1JM1 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JM1 N1 C2 SING N N 1 A1JM1 C2 N3 SING Y N 2 A1JM1 N3 C4 DOUB Y N 3 A1JM1 C4 N5 SING Y N 4 A1JM1 N5 C6 DOUB Y N 5 A1JM1 C6 N7 SING Y N 6 A1JM1 N7 C8 SING Y N 7 A1JM1 C8 N9 DOUB Y N 8 A1JM1 N9 C10 SING Y N 9 A1JM1 N7 C11 SING N N 10 A1JM1 C11 C12 SING N N 11 A1JM1 C12 C13 SING N N 12 A1JM1 C13 C14 SING N N 13 A1JM1 C14 S15 SING N N 14 A1JM1 S15 C16 SING N N 15 A1JM1 C16 N17 DOUB Y N 16 A1JM1 N17 C18 SING Y N 17 A1JM1 C18 C19 SING Y N 18 A1JM1 C19 C20 DOUB Y N 19 A1JM1 C20 C21 SING Y N 20 A1JM1 C21 C22 DOUB Y N 21 A1JM1 C22 C23 SING Y N 22 A1JM1 C23 S24 SING Y N 23 A1JM1 C13 C25 SING N N 24 A1JM1 C25 O26 SING N N 25 A1JM1 C25 C27 SING N N 26 A1JM1 C27 O28 SING N N 27 A1JM1 C10 C2 DOUB Y N 28 A1JM1 C27 C11 SING N N 29 A1JM1 C10 C6 SING Y N 30 A1JM1 S24 C16 SING Y N 31 A1JM1 C23 C18 DOUB Y N 32 A1JM1 C8 H8 SING N N 33 A1JM1 C4 H4 SING N N 34 A1JM1 C11 H11 SING N N 35 A1JM1 C12 H12A SING N N 36 A1JM1 C12 H12B SING N N 37 A1JM1 C13 H13 SING N N 38 A1JM1 C14 H14A SING N N 39 A1JM1 C14 H14B SING N N 40 A1JM1 C19 H19 SING N N 41 A1JM1 C20 H20 SING N N 42 A1JM1 C21 H21 SING N N 43 A1JM1 C22 H22 SING N N 44 A1JM1 C25 H25 SING N N 45 A1JM1 C27 H27 SING N N 46 A1JM1 N1 H1A SING N N 47 A1JM1 N1 H1B SING N N 48 A1JM1 O26 H26 SING N N 49 A1JM1 O28 H28 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JM1 InChI InChI 1.06 "InChI=1S/C18H18N6O2S2/c19-16-13-17(21-7-20-16)24(8-22-13)11-5-9(14(25)15(11)26)6-27-18-23-10-3-1-2-4-12(10)28-18/h1-4,7-9,11,14-15,25-26H,5-6H2,(H2,19,20,21)/t9-,11-,14-,15+/m1/s1" A1JM1 InChIKey InChI 1.06 HUTNNBOUQMNUAN-VGKMCQHDSA-N A1JM1 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3C[C@H](CSc4sc5ccccc5n4)[C@@H](O)[C@H]3O" A1JM1 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3C[CH](CSc4sc5ccccc5n4)[CH](O)[CH]3O" A1JM1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)nc(s2)SC[C@H]3C[C@H]([C@@H]([C@@H]3O)O)n4cnc5c4ncnc5N" A1JM1 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)nc(s2)SCC3CC(C(C3O)O)n4cnc5c4ncnc5N" # _pdbx_chem_comp_identifier.comp_id A1JM1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},2~{S},3~{R},5~{S})-3-(6-aminopurin-9-yl)-5-(1,3-benzothiazol-2-ylsulfanylmethyl)cyclopentane-1,2-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JM1 "Create component" 2025-08-08 PDBE A1JM1 "Initial release" 2026-01-21 RCSB #