data_A1JMD # _chem_comp.id A1JMD _chem_comp.name "(S)-N-(1-(5-((2-amino-2-oxoethyl)thio)-4-(4-(tert-Butyl)phenyl)-4H-1,2,4-triazol-3-yl)-2-(3,5-difluorophenyl)ethyl)-2-(5-hydroxy-1H-indol-3-yl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H32 F2 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{N}-[(1~{S})-1-[5-(2-azanyl-2-oxidanylidene-ethyl)sulfanyl-4-(4-~{tert}-butylphenyl)-1,2,4-triazol-3-yl]-2-[3,5-bis(fluoranyl)phenyl]ethyl]-2-(5-oxidanyl-1~{H}-indol-3-yl)ethanamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-05 _chem_comp.pdbx_modified_date 2026-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 618.697 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JMD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9S7M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JMD C1 C1 C 0 1 N N N N N N 34.518 8.828 3.560 -1.397 5.452 0.714 C1 A1JMD 1 A1JMD N1 N1 N 0 1 Y N N N N N 29.716 4.301 4.436 -2.653 -0.716 -0.136 N1 A1JMD 2 A1JMD O1 O1 O 0 1 N N N N N N 33.149 2.634 5.160 -8.040 -1.223 1.293 O1 A1JMD 3 A1JMD S1 S1 S 0 1 N N N N N N 30.145 3.114 6.974 -5.349 -0.971 0.579 S1 A1JMD 4 A1JMD C2 C2 C 0 1 N N N N N N 33.100 9.109 4.059 -2.510 4.957 -0.213 C2 A1JMD 5 A1JMD N2 N2 N 0 1 N N N N N N 33.543 1.468 7.160 -8.416 -3.406 1.401 N2 A1JMD 6 A1JMD O2 O2 O 0 1 N N N N N N 30.842 4.481 -0.122 2.316 -0.453 -0.204 O2 A1JMD 7 A1JMD C3 C3 C 0 1 N N N N N N 32.384 10.111 3.093 -3.855 5.508 0.267 C3 A1JMD 8 A1JMD N3 N3 N 0 1 Y N N N N N 28.519 2.439 4.825 -3.322 -2.757 0.048 N3 A1JMD 9 A1JMD O3 O3 O 0 1 N N N N N N 34.299 2.464 -4.112 3.898 1.414 5.052 O3 A1JMD 10 A1JMD C4 C4 C 0 1 N N N N N N 33.164 9.705 5.513 -2.240 5.442 -1.639 C4 A1JMD 11 A1JMD N4 N4 N 0 1 Y N N N N N 28.183 2.906 3.506 -2.080 -2.787 -0.282 N4 A1JMD 12 A1JMD C5 C5 C 0 1 Y N N N N N 32.197 7.800 4.126 -2.548 3.451 -0.192 C5 A1JMD 13 A1JMD N5 N5 N 0 1 N N N N N N 28.893 3.879 0.998 0.737 -2.002 -0.022 N5 A1JMD 14 A1JMD C6 C6 C 0 1 Y N N N N N 30.820 7.913 4.830 -2.780 2.783 0.996 C6 A1JMD 15 A1JMD N6 N6 N 0 1 Y N N N N N 29.236 4.510 -4.143 6.341 -0.949 0.736 N6 A1JMD 16 A1JMD C7 C7 C 0 1 Y N N N N N 30.071 6.852 4.954 -2.815 1.402 1.017 C7 A1JMD 17 A1JMD C8 C8 C 0 1 Y N N N N N 30.614 5.474 4.463 -2.618 0.685 -0.155 C8 A1JMD 18 A1JMD C9 C9 C 0 1 Y N N N N N 29.442 3.299 5.359 -3.728 -1.513 0.151 C9 A1JMD 19 A1JMD C10 C10 C 0 1 N N N N N N 31.946 3.564 7.026 -6.166 -2.571 0.801 C10 A1JMD 20 A1JMD C11 C11 C 0 1 N N N N N N 32.914 2.524 6.333 -7.607 -2.350 1.182 C11 A1JMD 21 A1JMD C12 C12 C 0 1 Y N N N N N 28.924 4.013 3.294 -1.620 -1.574 -0.408 C12 A1JMD 22 A1JMD C13 C13 C 0 1 N N S N N N 28.893 4.869 2.043 -0.213 -1.187 -0.783 C13 A1JMD 23 A1JMD C14 C14 C 0 1 N N N N N N 27.538 5.597 2.094 -0.001 -1.421 -2.280 C14 A1JMD 24 A1JMD C15 C15 C 0 1 Y N N N N N 27.640 6.866 1.221 1.363 -0.920 -2.679 C15 A1JMD 25 A1JMD C16 C16 C 0 1 Y N N N N N 28.216 7.931 1.671 2.452 -1.769 -2.627 C16 A1JMD 26 A1JMD C17 C17 C 0 1 Y N N N N N 28.286 9.169 0.742 3.706 -1.309 -2.994 C17 A1JMD 27 A1JMD C18 C18 C 0 1 Y N N N N N 27.834 9.135 -0.513 3.868 0.000 -3.412 C18 A1JMD 28 A1JMD C19 C19 C 0 1 Y N N N N N 27.241 7.835 -1.020 2.776 0.849 -3.463 C19 A1JMD 29 A1JMD C20 C20 C 0 1 Y N N N N N 27.157 6.790 -0.233 1.522 0.386 -3.102 C20 A1JMD 30 A1JMD C21 C21 C 0 1 N N N N N N 29.952 3.717 -0.032 1.982 -1.542 0.214 C21 A1JMD 31 A1JMD C22 C22 C 0 1 N N N N N N 29.771 2.606 -1.045 2.959 -2.380 0.997 C22 A1JMD 32 A1JMD C23 C23 C 0 1 Y N N N N N 29.677 3.333 -2.472 4.268 -1.644 1.118 C23 A1JMD 33 A1JMD C24 C24 C 0 1 Y N N N N N 28.699 4.102 -3.006 5.338 -1.780 0.319 C24 A1JMD 34 A1JMD C25 C25 C 0 1 Y N N N N N 30.544 4.171 -4.422 5.930 -0.238 1.844 C25 A1JMD 35 A1JMD C26 C26 C 0 1 Y N N N N N 31.436 4.342 -5.443 6.544 0.715 2.648 C26 A1JMD 36 A1JMD C27 C27 C 0 1 Y N N N N N 32.714 3.766 -5.344 5.862 1.260 3.713 C27 A1JMD 37 A1JMD C28 C28 C 0 1 Y N N N N N 33.062 3.022 -4.198 4.557 0.866 3.996 C28 A1JMD 38 A1JMD C29 C29 C 0 1 Y N N N N N 32.194 2.795 -3.144 3.930 -0.079 3.209 C29 A1JMD 39 A1JMD C30 C30 C 0 1 Y N N N N N 30.940 3.369 -3.262 4.612 -0.639 2.127 C30 A1JMD 40 A1JMD C31 C31 C 0 1 Y N N N N N 31.769 5.376 3.809 -2.387 1.359 -1.347 C31 A1JMD 41 A1JMD C32 C32 C 0 1 Y N N N N N 32.621 6.622 3.624 -2.358 2.740 -1.363 C32 A1JMD 42 A1JMD F1 F1 F 0 1 N N N N N N 28.856 10.301 1.238 4.771 -2.139 -2.943 F1 A1JMD 43 A1JMD F2 F2 F 0 1 N N N N N N 26.771 7.696 -2.279 2.933 2.128 -3.871 F2 A1JMD 44 A1JMD H1 H1 H 0 1 N N N N N N 35.015 8.124 4.243 -1.590 5.107 1.729 H1 A1JMD 45 A1JMD H2 H2 H 0 1 N N N N N N 34.472 8.390 2.552 -0.439 5.059 0.372 H2 A1JMD 46 A1JMD H3 H3 H 0 1 N N N N N N 35.088 9.768 3.525 -1.369 6.541 0.699 H3 A1JMD 47 A1JMD H14 H4 H 0 1 N N N N N N 34.183 0.822 6.744 -8.070 -4.308 1.312 H14 A1JMD 48 A1JMD H15 H5 H 0 1 N N N N N N 33.328 1.401 8.134 -9.344 -3.264 1.646 H15 A1JMD 49 A1JMD H4 H6 H 0 1 N N N N N N 31.365 10.308 3.458 -3.827 6.598 0.252 H4 A1JMD 50 A1JMD H5 H7 H 0 1 N N N N N N 32.950 11.054 3.058 -4.647 5.156 -0.393 H5 A1JMD 51 A1JMD H6 H8 H 0 1 N N N N N N 32.334 9.675 2.084 -4.047 5.163 1.283 H6 A1JMD 52 A1JMD H28 H9 H 0 1 N N N N N N 34.380 1.999 -3.288 3.400 2.213 4.832 H28 A1JMD 53 A1JMD H7 H10 H 0 1 N N N N N N 32.144 9.907 5.872 -1.282 5.049 -1.980 H7 A1JMD 54 A1JMD H8 H11 H 0 1 N N N N N N 33.652 8.983 6.184 -3.033 5.089 -2.298 H8 A1JMD 55 A1JMD H9 H12 H 0 1 N N N N N N 33.741 10.642 5.500 -2.212 6.531 -1.653 H9 A1JMD 56 A1JMD H21 H13 H 0 1 N N N N N N 28.117 3.249 0.962 0.470 -2.872 0.312 H21 A1JMD 57 A1JMD H10 H14 H 0 1 N N N N N N 30.483 8.864 5.215 -2.933 3.341 1.908 H10 A1JMD 58 A1JMD H25 H15 H 0 1 N N N N N N 28.703 5.055 -4.790 7.213 -0.873 0.317 H25 A1JMD 59 A1JMD H11 H16 H 0 1 N N N N N N 29.086 6.927 5.391 -2.995 0.880 1.946 H11 A1JMD 60 A1JMD H12 H17 H 0 1 N N N N N N 32.070 4.534 6.522 -6.119 -3.136 -0.130 H12 A1JMD 61 A1JMD H13 H18 H 0 1 N N N N N N 32.244 3.658 8.081 -5.663 -3.129 1.591 H13 A1JMD 62 A1JMD H32 H19 H 0 1 N N N N N N 29.739 5.570 1.991 -0.053 -0.133 -0.554 H32 A1JMD 63 A1JMD H16 H20 H 0 1 N N N N N N 26.747 4.939 1.704 -0.074 -2.487 -2.495 H16 A1JMD 64 A1JMD H17 H21 H 0 1 N N N N N N 27.304 5.877 3.132 -0.765 -0.884 -2.843 H17 A1JMD 65 A1JMD H18 H22 H 0 1 N N N N N N 28.636 7.958 2.665 2.326 -2.790 -2.301 H18 A1JMD 66 A1JMD H19 H23 H 0 1 N N N N N N 27.889 10.007 -1.148 4.846 0.359 -3.697 H19 A1JMD 67 A1JMD H20 H24 H 0 1 N N N N N N 26.744 5.867 -0.612 0.669 1.047 -3.146 H20 A1JMD 68 A1JMD H22 H25 H 0 1 N N N N N N 30.630 1.920 -1.020 2.557 -2.573 1.991 H22 A1JMD 69 A1JMD H23 H26 H 0 1 N N N N N N 28.848 2.045 -0.838 3.121 -3.327 0.480 H23 A1JMD 70 A1JMD H24 H27 H 0 1 N N N N N N 27.722 4.326 -2.603 5.398 -2.447 -0.529 H24 A1JMD 71 A1JMD H26 H28 H 0 1 N N N N N N 31.162 4.914 -6.317 7.556 1.028 2.438 H26 A1JMD 72 A1JMD H27 H29 H 0 1 N N N N N N 33.428 3.893 -6.144 6.344 2.000 4.335 H27 A1JMD 73 A1JMD H29 H30 H 0 1 N N N N N N 32.477 2.207 -2.284 2.918 -0.385 3.430 H29 A1JMD 74 A1JMD H30 H31 H 0 1 N N N N N N 32.097 4.425 3.415 -2.233 0.804 -2.260 H30 A1JMD 75 A1JMD H31 H32 H 0 1 N N N N N N 33.560 6.564 3.094 -2.182 3.265 -2.290 H31 A1JMD 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JMD C1 C2 SING N N 1 A1JMD C2 C3 SING N N 2 A1JMD C2 C4 SING N N 3 A1JMD C2 C5 SING N N 4 A1JMD C5 C6 DOUB Y N 5 A1JMD C5 C32 SING Y N 6 A1JMD C6 C7 SING Y N 7 A1JMD C7 C8 DOUB Y N 8 A1JMD C8 N1 SING N N 9 A1JMD C8 C31 SING Y N 10 A1JMD N1 C9 SING Y N 11 A1JMD N1 C12 SING Y N 12 A1JMD C9 S1 SING N N 13 A1JMD C9 N3 DOUB Y N 14 A1JMD S1 C10 SING N N 15 A1JMD C10 C11 SING N N 16 A1JMD C11 N2 SING N N 17 A1JMD C11 O1 DOUB N N 18 A1JMD N3 N4 SING Y N 19 A1JMD N4 C12 DOUB Y N 20 A1JMD C12 C13 SING N N 21 A1JMD C13 C14 SING N N 22 A1JMD C13 N5 SING N N 23 A1JMD C14 C15 SING N N 24 A1JMD C15 C16 DOUB Y N 25 A1JMD C15 C20 SING Y N 26 A1JMD C16 C17 SING Y N 27 A1JMD C17 F1 SING N N 28 A1JMD C17 C18 DOUB Y N 29 A1JMD C18 C19 SING Y N 30 A1JMD C19 F2 SING N N 31 A1JMD C19 C20 DOUB Y N 32 A1JMD N5 C21 SING N N 33 A1JMD C21 O2 DOUB N N 34 A1JMD C21 C22 SING N N 35 A1JMD C22 C23 SING N N 36 A1JMD C23 C24 DOUB Y N 37 A1JMD C23 C30 SING Y N 38 A1JMD C24 N6 SING Y N 39 A1JMD N6 C25 SING Y N 40 A1JMD C25 C26 DOUB Y N 41 A1JMD C25 C30 SING Y N 42 A1JMD C26 C27 SING Y N 43 A1JMD C27 C28 DOUB Y N 44 A1JMD C28 O3 SING N N 45 A1JMD C28 C29 SING Y N 46 A1JMD C29 C30 DOUB Y N 47 A1JMD C31 C32 DOUB Y N 48 A1JMD C1 H1 SING N N 49 A1JMD C1 H2 SING N N 50 A1JMD C1 H3 SING N N 51 A1JMD N2 H14 SING N N 52 A1JMD N2 H15 SING N N 53 A1JMD C3 H4 SING N N 54 A1JMD C3 H5 SING N N 55 A1JMD C3 H6 SING N N 56 A1JMD O3 H28 SING N N 57 A1JMD C4 H7 SING N N 58 A1JMD C4 H8 SING N N 59 A1JMD C4 H9 SING N N 60 A1JMD N5 H21 SING N N 61 A1JMD C6 H10 SING N N 62 A1JMD N6 H25 SING N N 63 A1JMD C7 H11 SING N N 64 A1JMD C10 H12 SING N N 65 A1JMD C10 H13 SING N N 66 A1JMD C13 H32 SING N N 67 A1JMD C14 H16 SING N N 68 A1JMD C14 H17 SING N N 69 A1JMD C16 H18 SING N N 70 A1JMD C18 H19 SING N N 71 A1JMD C20 H20 SING N N 72 A1JMD C22 H22 SING N N 73 A1JMD C22 H23 SING N N 74 A1JMD C24 H24 SING N N 75 A1JMD C26 H26 SING N N 76 A1JMD C27 H27 SING N N 77 A1JMD C29 H29 SING N N 78 A1JMD C31 H30 SING N N 79 A1JMD C32 H31 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JMD InChI InChI 1.06 "InChI=1S/C32H32F2N6O3S/c1-32(2,3)20-4-6-23(7-5-20)40-30(38-39-31(40)44-17-28(35)42)27(12-18-10-21(33)14-22(34)11-18)37-29(43)13-19-16-36-26-9-8-24(41)15-25(19)26/h4-11,14-16,27,36,41H,12-13,17H2,1-3H3,(H2,35,42)(H,37,43)/t27-/m0/s1" A1JMD InChIKey InChI 1.06 MIVJVJPYZXKCHO-MHZLTWQESA-N A1JMD SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)c1ccc(cc1)n2c(SCC(N)=O)nnc2[C@H](Cc3cc(F)cc(F)c3)NC(=O)Cc4c[nH]c5ccc(O)cc45" A1JMD SMILES CACTVS 3.385 "CC(C)(C)c1ccc(cc1)n2c(SCC(N)=O)nnc2[CH](Cc3cc(F)cc(F)c3)NC(=O)Cc4c[nH]c5ccc(O)cc45" A1JMD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1ccc(cc1)n2c(nnc2SCC(=O)N)[C@H](Cc3cc(cc(c3)F)F)NC(=O)Cc4c[nH]c5c4cc(cc5)O" A1JMD SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1ccc(cc1)n2c(nnc2SCC(=O)N)C(Cc3cc(cc(c3)F)F)NC(=O)Cc4c[nH]c5c4cc(cc5)O" # _pdbx_chem_comp_identifier.comp_id A1JMD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(1~{S})-1-[5-(2-azanyl-2-oxidanylidene-ethyl)sulfanyl-4-(4-~{tert}-butylphenyl)-1,2,4-triazol-3-yl]-2-[3,5-bis(fluoranyl)phenyl]ethyl]-2-(5-oxidanyl-1~{H}-indol-3-yl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JMD "Create component" 2025-08-05 PDBE A1JMD "Initial release" 2026-08-19 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JMD _pdbx_chem_comp_synonyms.name "~{N}-[(1~{S})-1-[5-(2-azanyl-2-oxidanylidene-ethyl)sulfanyl-4-(4-~{tert}-butylphenyl)-1,2,4-triazol-3-yl]-2-[3,5-bis(fluoranyl)phenyl]ethyl]-2-(5-oxidanyl-1~{H}-indol-3-yl)ethanamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #