data_A1JMR # _chem_comp.id A1JMR _chem_comp.name "4-[3-[4-[[(3~{S},4~{R})-3-fluoranyl-1-methyl-piperidin-4-yl]amino]-1-[2,2,2-tris(fluoranyl)ethyl]indol-2-yl]prop-2-ynylamino]-3-methoxy-~{N}-methyl-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H31 F4 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-06 _chem_comp.pdbx_modified_date 2026-03-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 545.572 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JMR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9S9O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JMR C5 C1 C 0 1 N N N N N N 92.215 91.929 -42.657 -0.264 -2.613 -0.656 C5 A1JMR 1 A1JMR C7 C2 C 0 1 Y N N N N N 91.756 94.415 -42.844 -2.635 -1.780 -0.425 C7 A1JMR 2 A1JMR C8 C3 C 0 1 Y N N N N N 91.780 94.795 -41.509 -3.427 -2.905 -0.632 C8 A1JMR 3 A1JMR C10 C4 C 0 1 Y N N N N N 91.337 97.070 -42.208 -5.412 -1.586 -0.321 C10 A1JMR 4 A1JMR N12 N1 N 0 1 N N N N N N 91.087 97.597 -44.545 -5.265 0.772 0.150 N12 A1JMR 5 A1JMR C13 C5 C 0 1 N N R N N N 91.081 99.037 -44.404 -6.727 0.860 0.201 C13 A1JMR 6 A1JMR C15 C6 C 0 1 N N N N N N 92.449 101.110 -44.038 -8.662 2.174 1.074 C15 A1JMR 7 A1JMR C17 C7 C 0 1 N N N N N N 90.538 101.197 -45.573 -8.799 1.211 -1.146 C17 A1JMR 8 A1JMR C21 C8 C 0 1 Y N N N N N 91.529 95.338 -43.873 -3.248 -0.541 -0.162 C21 A1JMR 9 A1JMR C22 C9 C 0 1 Y N N N N N 91.591 94.599 -45.097 -2.168 0.426 0.007 C22 A1JMR 10 A1JMR C24 C10 C 0 1 N N N N N N 92.021 92.239 -45.734 0.308 0.324 -0.072 C24 A1JMR 11 A1JMR C26 C11 C 0 1 N N N N N N 92.578 90.337 -47.511 2.726 1.387 0.085 C26 A1JMR 12 A1JMR C28 C12 C 0 1 Y N N N N N 90.663 90.422 -49.110 5.087 0.670 -0.115 C28 A1JMR 13 A1JMR C11 C13 C 0 1 Y N N N N N 91.314 96.688 -43.548 -4.649 -0.451 -0.111 C11 A1JMR 14 A1JMR C14 C14 C 0 1 N N S N N N 92.456 99.597 -44.086 -7.137 2.050 1.073 C14 A1JMR 15 A1JMR C18 C15 C 0 1 N N N N N N 90.536 99.677 -45.679 -7.278 1.059 -1.213 C18 A1JMR 16 A1JMR C19 C16 C 0 1 N N N N N N 91.982 103.176 -45.288 -10.586 2.623 -0.326 C19 A1JMR 17 A1JMR C2 C17 C 0 1 N N N N N N 93.676 91.763 -42.349 0.117 -3.262 0.676 C2 A1JMR 18 A1JMR C23 C18 C 0 1 Y N N N N N 91.848 93.284 -44.777 -1.001 -0.251 -0.156 C23 A1JMR 19 A1JMR C25 C19 C 0 1 N N N N N N 92.235 91.386 -46.539 1.381 0.796 -0.002 C25 A1JMR 20 A1JMR C29 C20 C 0 1 Y N N N N N 89.502 89.812 -49.598 6.045 -0.322 -0.337 C29 A1JMR 21 A1JMR C30 C21 C 0 1 Y N N N N N 88.721 90.432 -50.554 7.387 -0.002 -0.310 C30 A1JMR 22 A1JMR C31 C22 C 0 1 Y N N N N N 89.088 91.683 -51.040 7.785 1.315 -0.061 C31 A1JMR 23 A1JMR C32 C23 C 0 1 Y N N N N N 90.241 92.294 -50.558 6.821 2.303 0.160 C32 A1JMR 24 A1JMR C33 C24 C 0 1 Y N N N N N 91.025 91.674 -49.602 5.483 1.979 0.132 C33 A1JMR 25 A1JMR C34 C25 C 0 1 N N N N N N 88.234 92.358 -52.066 9.218 1.661 -0.031 C34 A1JMR 26 A1JMR C36 C26 C 0 1 N N N N N N 86.406 92.166 -53.660 11.024 3.275 0.239 C36 A1JMR 27 A1JMR C39 C27 C 0 1 N N N N N N 88.058 87.916 -49.509 6.688 -2.565 -0.797 C39 A1JMR 28 A1JMR C9 C28 C 0 1 Y N N N N N 91.566 96.132 -41.206 -4.801 -2.803 -0.580 C9 A1JMR 29 A1JMR F1 F1 F 0 1 N N N N N N 94.415 91.770 -43.451 0.639 -2.290 1.536 F1 A1JMR 30 A1JMR F20 F2 F 0 1 N N N N N N 93.350 99.183 -45.092 -6.574 3.223 0.557 F20 A1JMR 31 A1JMR F3 F3 F 0 1 N N N N N N 94.148 92.736 -41.572 -1.018 -3.838 1.256 F3 A1JMR 32 A1JMR F4 F4 F 0 1 N N N N N N 93.925 90.622 -41.720 1.080 -4.252 0.452 F4 A1JMR 33 A1JMR N16 N2 N 0 1 N N N N N N 91.925 101.687 -45.315 -9.140 2.363 -0.302 N16 A1JMR 34 A1JMR N27 N3 N 0 1 N N N N N N 91.411 89.757 -48.162 3.732 0.347 -0.148 N27 A1JMR 35 A1JMR N35 N4 N 0 1 N N N N N N 87.291 91.621 -52.647 9.600 2.931 0.209 N35 A1JMR 36 A1JMR N6 N5 N 0 1 Y N N N N N 91.949 93.160 -43.407 -1.273 -1.576 -0.422 N6 A1JMR 37 A1JMR O37 O1 O 0 1 N N N N N N 88.401 93.543 -52.341 10.056 0.801 -0.224 O37 A1JMR 38 A1JMR O38 O2 O 0 1 N N N N N N 89.215 88.603 -49.034 5.655 -1.602 -0.579 O38 A1JMR 39 A1JMR H5A H1 H 0 1 N N N N N N 91.878 91.069 -43.254 0.620 -2.164 -1.108 H5A A1JMR 40 A1JMR H5B H2 H 0 1 N N N N N N 91.654 91.961 -41.711 -0.671 -3.370 -1.326 H5B A1JMR 41 A1JMR H8 H3 H 0 1 N N N N N N 91.960 94.071 -40.729 -2.965 -3.860 -0.836 H8 A1JMR 42 A1JMR H10 H4 H 0 1 N N N N N N 91.175 98.105 -41.944 -6.490 -1.523 -0.284 H10 A1JMR 43 A1JMR H12 H5 H 0 1 N N N N N N 91.783 97.405 -45.237 -4.726 1.565 0.296 H12 A1JMR 44 A1JMR H13 H6 H 0 1 N N N N N N 90.407 99.309 -43.578 -7.132 -0.059 0.626 H13 A1JMR 45 A1JMR H15A H7 H 0 0 N N N N N N 91.810 101.440 -43.206 -9.100 1.265 1.488 H15A A1JMR 46 A1JMR H15B H8 H 0 0 N N N N N N 93.476 101.469 -43.876 -8.957 3.029 1.682 H15B A1JMR 47 A1JMR H17A H9 H 0 0 N N N N N N 89.882 101.506 -44.745 -9.193 1.367 -2.150 H17A A1JMR 48 A1JMR H17B H10 H 0 0 N N N N N N 90.168 101.629 -46.515 -9.236 0.307 -0.721 H17B A1JMR 49 A1JMR H22 H11 H 0 1 N N N N N N 91.460 95.000 -46.091 -2.275 1.480 0.221 H22 A1JMR 50 A1JMR H26A H12 H 0 0 N N N N N N 93.228 90.774 -48.283 2.829 2.168 -0.669 H26A A1JMR 51 A1JMR H26B H13 H 0 0 N N N N N N 93.120 89.537 -46.986 2.871 1.817 1.076 H26B A1JMR 52 A1JMR H14 H14 H 0 1 N N N N N N 92.778 99.212 -43.107 -6.784 1.894 2.092 H14 A1JMR 53 A1JMR H18A H15 H 0 0 N N N N N N 89.505 99.330 -45.843 -6.841 1.957 -1.651 H18A A1JMR 54 A1JMR H18B H16 H 0 0 N N N N N N 91.165 99.375 -46.530 -7.025 0.194 -1.827 H18B A1JMR 55 A1JMR H19A H17 H 0 0 N N N N N N 91.592 103.576 -46.236 -10.802 3.525 0.247 H19A A1JMR 56 A1JMR H19B H18 H 0 0 N N N N N N 91.371 103.551 -44.453 -10.913 2.760 -1.356 H19B A1JMR 57 A1JMR H19C H19 H 0 0 N N N N N N 93.025 103.501 -45.155 -11.115 1.778 0.115 H19C A1JMR 58 A1JMR H30 H20 H 0 1 N N N N N N 87.829 89.948 -50.923 8.129 -0.768 -0.482 H30 A1JMR 59 A1JMR H32 H21 H 0 1 N N N N N N 90.528 93.265 -50.935 7.126 3.321 0.353 H32 A1JMR 60 A1JMR H33 H22 H 0 1 N N N N N N 91.918 92.160 -49.237 4.740 2.744 0.304 H33 A1JMR 61 A1JMR H36A H23 H 0 0 N N N N N N 85.710 91.384 -53.999 11.137 4.339 0.446 H36A A1JMR 62 A1JMR H36B H24 H 0 0 N N N N N N 85.836 93.005 -53.235 11.521 2.698 1.019 H36B A1JMR 63 A1JMR H36C H25 H 0 0 N N N N N N 87.001 92.522 -54.514 11.474 3.043 -0.727 H36C A1JMR 64 A1JMR H39A H26 H 0 0 N N N N N N 87.950 86.963 -48.970 7.282 -2.271 -1.663 H39A A1JMR 65 A1JMR H39B H27 H 0 0 N N N N N N 87.167 88.537 -49.338 7.330 -2.615 0.083 H39B A1JMR 66 A1JMR H39C H28 H 0 0 N N N N N N 88.166 87.718 -50.586 6.242 -3.542 -0.978 H39C A1JMR 67 A1JMR H9 H29 H 0 1 N N N N N N 91.577 96.450 -40.174 -5.408 -3.682 -0.742 H9 A1JMR 68 A1JMR H27 H31 H 0 1 N N N N N N 91.732 88.920 -48.604 3.455 -0.565 -0.325 H27 A1JMR 69 A1JMR H35 H32 H 0 1 N N N N N N 87.189 90.663 -52.378 8.932 3.618 0.363 H35 A1JMR 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JMR F1 C2 SING N N 1 A1JMR C2 F3 SING N N 2 A1JMR C2 F4 SING N N 3 A1JMR C2 C5 SING N N 4 A1JMR C5 N6 SING N N 5 A1JMR N6 C7 SING Y N 6 A1JMR C7 C8 DOUB Y N 7 A1JMR C8 C9 SING Y N 8 A1JMR C9 C10 DOUB Y N 9 A1JMR C10 C11 SING Y N 10 A1JMR C11 N12 SING N N 11 A1JMR N12 C13 SING N N 12 A1JMR C13 C14 SING N N 13 A1JMR C14 C15 SING N N 14 A1JMR C15 N16 SING N N 15 A1JMR N16 C17 SING N N 16 A1JMR C17 C18 SING N N 17 A1JMR N16 C19 SING N N 18 A1JMR C14 F20 SING N N 19 A1JMR C11 C21 DOUB Y N 20 A1JMR C21 C22 SING Y N 21 A1JMR C22 C23 DOUB Y N 22 A1JMR C23 C24 SING N N 23 A1JMR C24 C25 TRIP N N 24 A1JMR C25 C26 SING N N 25 A1JMR C26 N27 SING N N 26 A1JMR N27 C28 SING N N 27 A1JMR C28 C29 DOUB Y N 28 A1JMR C29 C30 SING Y N 29 A1JMR C30 C31 DOUB Y N 30 A1JMR C31 C32 SING Y N 31 A1JMR C32 C33 DOUB Y N 32 A1JMR C31 C34 SING N N 33 A1JMR C34 N35 SING N N 34 A1JMR N35 C36 SING N N 35 A1JMR C34 O37 DOUB N N 36 A1JMR C29 O38 SING N N 37 A1JMR O38 C39 SING N N 38 A1JMR C23 N6 SING Y N 39 A1JMR C21 C7 SING Y N 40 A1JMR C18 C13 SING N N 41 A1JMR C33 C28 SING Y N 42 A1JMR C5 H5A SING N N 43 A1JMR C5 H5B SING N N 44 A1JMR C8 H8 SING N N 45 A1JMR C10 H10 SING N N 46 A1JMR N12 H12 SING N N 47 A1JMR C13 H13 SING N N 48 A1JMR C15 H15A SING N N 49 A1JMR C15 H15B SING N N 50 A1JMR C17 H17A SING N N 51 A1JMR C17 H17B SING N N 52 A1JMR C22 H22 SING N N 53 A1JMR C26 H26A SING N N 54 A1JMR C26 H26B SING N N 55 A1JMR C14 H14 SING N N 56 A1JMR C18 H18A SING N N 57 A1JMR C18 H18B SING N N 58 A1JMR C19 H19A SING N N 59 A1JMR C19 H19B SING N N 60 A1JMR C19 H19C SING N N 61 A1JMR C30 H30 SING N N 62 A1JMR C32 H32 SING N N 63 A1JMR C33 H33 SING N N 64 A1JMR C36 H36A SING N N 65 A1JMR C36 H36B SING N N 66 A1JMR C36 H36C SING N N 67 A1JMR C39 H39A SING N N 68 A1JMR C39 H39B SING N N 69 A1JMR C39 H39C SING N N 70 A1JMR C9 H9 SING N N 71 A1JMR N27 H27 SING N N 72 A1JMR N35 H35 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JMR InChI InChI 1.06 "InChI=1S/C28H31F4N5O2/c1-33-27(38)18-9-10-24(26(14-18)39-3)34-12-5-6-19-15-20-22(35-23-11-13-36(2)16-21(23)29)7-4-8-25(20)37(19)17-28(30,31)32/h4,7-10,14-15,21,23,34-35H,11-13,16-17H2,1-3H3,(H,33,38)/t21-,23+/m0/s1" A1JMR InChIKey InChI 1.06 NKRKBSQLUPEVCZ-JTHBVZDNSA-N A1JMR SMILES_CANONICAL CACTVS 3.385 "CNC(=O)c1ccc(NCC#Cc2cc3c(N[C@@H]4CCN(C)C[C@@H]4F)cccc3n2CC(F)(F)F)c(OC)c1" A1JMR SMILES CACTVS 3.385 "CNC(=O)c1ccc(NCC#Cc2cc3c(N[CH]4CCN(C)C[CH]4F)cccc3n2CC(F)(F)F)c(OC)c1" A1JMR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1ccc(c(c1)OC)NCC#Cc2cc3c(cccc3n2CC(F)(F)F)N[C@@H]4CCN(C[C@@H]4F)C" A1JMR SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1ccc(c(c1)OC)NCC#Cc2cc3c(cccc3n2CC(F)(F)F)NC4CCN(CC4F)C" # _pdbx_chem_comp_identifier.comp_id A1JMR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[3-[4-[[(3~{S},4~{R})-3-fluoranyl-1-methyl-piperidin-4-yl]amino]-1-[2,2,2-tris(fluoranyl)ethyl]indol-2-yl]prop-2-ynylamino]-3-methoxy-~{N}-methyl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JMR "Create component" 2025-08-06 PDBE A1JMR "Initial release" 2026-03-11 RCSB #