data_A1JN1 # _chem_comp.id A1JN1 _chem_comp.name "~{N}-methyl-5-[(3~{S})-3-[2-methyl-5-[[3-(trifluoromethyl)phenyl]carbamoyl]phenyl]pyrrolidin-1-yl]pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H25 F3 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-28 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 482.498 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JN1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SI2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JN1 C1 C1 C 0 1 N N N N N N 7.045 -19.392 -20.262 1.898 -3.379 -2.718 C1 A1JN1 1 A1JN1 C2 C2 C 0 1 Y N N N N N 7.331 -19.687 -18.805 0.775 -2.698 -1.979 C2 A1JN1 2 A1JN1 C3 C3 C 0 1 Y N N N N N 8.655 -19.870 -18.468 -0.501 -2.699 -2.514 C3 A1JN1 3 A1JN1 C4 C4 C 0 1 Y N N N N N 9.014 -20.163 -17.177 -1.534 -2.077 -1.843 C4 A1JN1 4 A1JN1 C5 C5 C 0 1 Y N N N N N 8.066 -20.260 -16.148 -1.289 -1.445 -0.623 C5 A1JN1 5 A1JN1 C6 C6 C 0 1 Y N N N N N 6.719 -20.091 -16.501 0.001 -1.448 -0.089 C6 A1JN1 6 A1JN1 C7 C7 C 0 1 Y N N N N N 6.338 -19.804 -17.816 1.024 -2.078 -0.767 C7 A1JN1 7 A1JN1 C8 C8 C 0 1 N N S N N N 4.883 -19.567 -18.192 2.416 -2.087 -0.190 C8 A1JN1 8 A1JN1 C12 C9 C 0 1 N N N N N N 2.591 -19.350 -17.702 3.657 -2.085 1.869 C12 A1JN1 9 A1JN1 C15 C10 C 0 1 Y N N N N N 1.950 -22.384 -19.905 5.990 -0.754 1.926 C15 A1JN1 10 A1JN1 C17 C11 C 0 1 Y N N N N N -0.230 -22.347 -20.684 7.498 0.711 0.982 C17 A1JN1 11 A1JN1 C18 C12 C 0 1 Y N N N N N -0.528 -21.177 -19.976 6.493 1.330 0.237 C18 A1JN1 12 A1JN1 C19 C13 C 0 1 Y N N N N N 0.494 -20.611 -19.193 5.179 0.864 0.353 C19 A1JN1 13 A1JN1 N22 N1 N 0 1 N N N N N N -2.113 -19.286 -19.657 8.083 2.893 -0.775 N22 A1JN1 14 A1JN1 C23 C14 C 0 1 N N N N N N -3.457 -18.703 -19.719 8.400 4.009 -1.670 C23 A1JN1 15 A1JN1 C24 C15 C 0 1 N N N N N N 8.445 -20.643 -14.749 -2.390 -0.775 0.101 C24 A1JN1 16 A1JN1 O25 O1 O 0 1 N N N N N N 7.568 -21.052 -13.994 -2.174 -0.226 1.163 O25 A1JN1 17 A1JN1 C27 C16 C 0 1 Y N N N N N 10.214 -21.064 -13.084 -4.696 -0.236 0.316 C27 A1JN1 18 A1JN1 C30 C17 C 0 1 Y N N N N N 11.319 -21.939 -10.682 -6.804 0.819 1.766 C30 A1JN1 19 A1JN1 C31 C18 C 0 1 Y N N N N N 11.750 -20.757 -11.259 -5.761 0.190 2.422 C31 A1JN1 20 A1JN1 C32 C19 C 0 1 Y N N N N N 11.213 -20.327 -12.462 -4.708 -0.337 1.701 C32 A1JN1 21 A1JN1 C33 C20 C 0 1 N N N N N N 9.862 -23.995 -10.665 -7.934 1.607 -0.324 C33 A1JN1 22 A1JN1 C10 C21 C 0 1 N N N N N N 4.201 -20.810 -18.777 2.893 -0.650 0.107 C10 A1JN1 23 A1JN1 N11 N2 N 0 1 N N N N N N 2.791 -20.670 -18.358 3.635 -0.690 1.380 N11 A1JN1 24 A1JN1 C13 C22 C 0 1 N N N N N N 3.953 -19.142 -17.028 2.424 -2.754 1.211 C13 A1JN1 25 A1JN1 C14 C23 C 0 1 Y N N N N N 1.760 -21.207 -19.160 4.931 -0.195 1.220 C14 A1JN1 26 A1JN1 N16 N3 N 0 1 Y N N N N N 0.972 -22.897 -20.627 7.218 -0.292 1.787 N16 A1JN1 27 A1JN1 C20 C24 C 0 1 N N N N N N -1.887 -20.572 -20.035 6.813 2.456 -0.666 C20 A1JN1 28 A1JN1 O21 O2 O 0 1 N N N N N N -2.829 -21.251 -20.427 5.930 2.988 -1.311 O21 A1JN1 29 A1JN1 N26 N4 N 0 1 N N N N N N 9.738 -20.637 -14.333 -3.634 -0.774 -0.417 N26 A1JN1 30 A1JN1 C28 C25 C 0 1 Y N N N N N 9.807 -22.281 -12.510 -5.745 0.396 -0.340 C28 A1JN1 31 A1JN1 C29 C26 C 0 1 Y N N N N N 10.344 -22.711 -11.304 -6.795 0.921 0.387 C29 A1JN1 32 A1JN1 F34 F1 F 0 1 N N N N N N 8.707 -23.741 -9.950 -8.924 0.668 -0.633 F34 A1JN1 33 A1JN1 F35 F2 F 0 1 N N N N N N 10.795 -24.509 -9.755 -8.473 2.597 0.505 F35 A1JN1 34 A1JN1 F36 F3 F 0 1 N N N N N N 9.535 -24.945 -11.633 -7.462 2.193 -1.503 F36 A1JN1 35 A1JN1 H1 H1 H 0 1 N N N N N N 6.892 -20.336 -20.805 2.375 -2.667 -3.391 H1 A1JN1 36 A1JN1 H2 H2 H 0 1 N N N N N N 6.139 -18.774 -20.340 2.632 -3.750 -2.002 H2 A1JN1 37 A1JN1 H3 H3 H 0 1 N N N N N N 7.897 -18.851 -20.700 1.500 -4.214 -3.295 H3 A1JN1 38 A1JN1 H4 H4 H 0 1 N N N N N N 9.417 -19.782 -19.228 -0.689 -3.188 -3.458 H4 A1JN1 39 A1JN1 H5 H5 H 0 1 N N N N N N 10.057 -20.324 -16.946 -2.529 -2.078 -2.261 H5 A1JN1 40 A1JN1 H6 H6 H 0 1 N N N N N N 5.958 -20.185 -15.740 0.198 -0.961 0.855 H6 A1JN1 41 A1JN1 H7 H7 H 0 1 N N N N N N 4.852 -18.774 -18.953 3.107 -2.595 -0.862 H7 A1JN1 42 A1JN1 H8 H8 H 0 1 N N N N N N 2.382 -18.561 -18.439 4.573 -2.584 1.552 H8 A1JN1 43 A1JN1 H9 H9 H 0 1 N N N N N N 1.777 -19.386 -16.963 3.568 -2.110 2.955 H9 A1JN1 44 A1JN1 H10 H10 H 0 1 N N N N N N 2.911 -22.876 -19.886 5.805 -1.576 2.601 H10 A1JN1 45 A1JN1 H11 H11 H 0 1 N N N N N N -0.996 -22.810 -21.289 8.517 1.059 0.897 H11 A1JN1 46 A1JN1 H12 H12 H 0 1 N N N N N N 0.302 -19.717 -18.618 4.377 1.320 -0.208 H12 A1JN1 47 A1JN1 H13 H13 H 0 1 N N N N N N -1.350 -18.728 -19.331 8.788 2.468 -0.261 H13 A1JN1 48 A1JN1 H14 H14 H 0 1 N N N N N N -3.421 -17.660 -19.371 9.469 4.218 -1.625 H14 A1JN1 49 A1JN1 H15 H15 H 0 1 N N N N N N -3.821 -18.731 -20.757 8.124 3.745 -2.691 H15 A1JN1 50 A1JN1 H16 H16 H 0 1 N N N N N N -4.137 -19.281 -19.076 7.843 4.893 -1.359 H16 A1JN1 51 A1JN1 H17 H17 H 0 1 N N N N N N 11.743 -22.264 -9.743 -7.626 1.230 2.332 H17 A1JN1 52 A1JN1 H18 H18 H 0 1 N N N N N N 12.510 -20.166 -10.769 -5.771 0.112 3.499 H18 A1JN1 53 A1JN1 H19 H19 H 0 1 N N N N N N 11.573 -19.416 -12.917 -3.894 -0.828 2.214 H19 A1JN1 54 A1JN1 H20 H20 H 0 1 N N N N N N 4.643 -21.729 -18.365 3.548 -0.305 -0.693 H20 A1JN1 55 A1JN1 H21 H21 H 0 1 N N N N N N 4.284 -20.823 -19.874 2.034 0.014 0.198 H21 A1JN1 56 A1JN1 H22 H22 H 0 1 N N N N N N 4.077 -19.788 -16.147 1.512 -2.519 1.761 H22 A1JN1 57 A1JN1 H23 H23 H 0 1 N N N N N N 4.111 -18.093 -16.739 2.562 -3.832 1.130 H23 A1JN1 58 A1JN1 H24 H24 H 0 1 N N N N N N 10.418 -20.294 -14.981 -3.793 -1.147 -1.299 H24 A1JN1 59 A1JN1 H25 H25 H 0 1 N N N N N N 9.069 -22.888 -13.013 -5.739 0.476 -1.417 H25 A1JN1 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JN1 C17 N16 DOUB Y N 1 A1JN1 C17 C18 SING Y N 2 A1JN1 N16 C15 SING Y N 3 A1JN1 O21 C20 DOUB N N 4 A1JN1 C1 C2 SING N N 5 A1JN1 C20 C18 SING N N 6 A1JN1 C20 N22 SING N N 7 A1JN1 C18 C19 DOUB Y N 8 A1JN1 C15 C14 DOUB Y N 9 A1JN1 C23 N22 SING N N 10 A1JN1 C19 C14 SING Y N 11 A1JN1 C14 N11 SING N N 12 A1JN1 C2 C3 DOUB Y N 13 A1JN1 C2 C7 SING Y N 14 A1JN1 C10 N11 SING N N 15 A1JN1 C10 C8 SING N N 16 A1JN1 C3 C4 SING Y N 17 A1JN1 N11 C12 SING N N 18 A1JN1 C8 C7 SING N N 19 A1JN1 C8 C13 SING N N 20 A1JN1 C7 C6 DOUB Y N 21 A1JN1 C12 C13 SING N N 22 A1JN1 C4 C5 DOUB Y N 23 A1JN1 C6 C5 SING Y N 24 A1JN1 C5 C24 SING N N 25 A1JN1 C24 N26 SING N N 26 A1JN1 C24 O25 DOUB N N 27 A1JN1 N26 C27 SING N N 28 A1JN1 C27 C28 DOUB Y N 29 A1JN1 C27 C32 SING Y N 30 A1JN1 C28 C29 SING Y N 31 A1JN1 C32 C31 DOUB Y N 32 A1JN1 F36 C33 SING N N 33 A1JN1 C29 C30 DOUB Y N 34 A1JN1 C29 C33 SING N N 35 A1JN1 C31 C30 SING Y N 36 A1JN1 C33 F34 SING N N 37 A1JN1 C33 F35 SING N N 38 A1JN1 C1 H1 SING N N 39 A1JN1 C1 H2 SING N N 40 A1JN1 C1 H3 SING N N 41 A1JN1 C3 H4 SING N N 42 A1JN1 C4 H5 SING N N 43 A1JN1 C6 H6 SING N N 44 A1JN1 C8 H7 SING N N 45 A1JN1 C12 H8 SING N N 46 A1JN1 C12 H9 SING N N 47 A1JN1 C15 H10 SING N N 48 A1JN1 C17 H11 SING N N 49 A1JN1 C19 H12 SING N N 50 A1JN1 N22 H13 SING N N 51 A1JN1 C23 H14 SING N N 52 A1JN1 C23 H15 SING N N 53 A1JN1 C23 H16 SING N N 54 A1JN1 C30 H17 SING N N 55 A1JN1 C31 H18 SING N N 56 A1JN1 C32 H19 SING N N 57 A1JN1 C10 H20 SING N N 58 A1JN1 C10 H21 SING N N 59 A1JN1 C13 H22 SING N N 60 A1JN1 C13 H23 SING N N 61 A1JN1 N26 H24 SING N N 62 A1JN1 C28 H25 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JN1 InChI InChI 1.06 "InChI=1S/C26H25F3N4O2/c1-16-6-7-17(25(35)32-21-5-3-4-20(12-21)26(27,28)29)11-23(16)18-8-9-33(15-18)22-10-19(13-31-14-22)24(34)30-2/h3-7,10-14,18H,8-9,15H2,1-2H3,(H,30,34)(H,32,35)/t18-/m1/s1" A1JN1 InChIKey InChI 1.06 LWGGNTWUQKSVCY-GOSISDBHSA-N A1JN1 SMILES_CANONICAL CACTVS 3.385 "CNC(=O)c1cncc(c1)N2CC[C@H](C2)c3cc(ccc3C)C(=O)Nc4cccc(c4)C(F)(F)F" A1JN1 SMILES CACTVS 3.385 "CNC(=O)c1cncc(c1)N2CC[CH](C2)c3cc(ccc3C)C(=O)Nc4cccc(c4)C(F)(F)F" A1JN1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1[C@@H]2CCN(C2)c3cc(cnc3)C(=O)NC)C(=O)Nc4cccc(c4)C(F)(F)F" A1JN1 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C2CCN(C2)c3cc(cnc3)C(=O)NC)C(=O)Nc4cccc(c4)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1JN1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-methyl-5-[(3~{S})-3-[2-methyl-5-[[3-(trifluoromethyl)phenyl]carbamoyl]phenyl]pyrrolidin-1-yl]pyridine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JN1 "Create component" 2025-08-28 PDBE A1JN1 "Initial release" 2026-07-29 RCSB #