data_A1JN2 # _chem_comp.id A1JN2 _chem_comp.name "methyl (5~{R})-5-[4-cyano-2-[2-(trimethyl-$l^{4}-azanyl)ethyl]phenyl]-7-methyl-3-oxidanylidene-8-[3-(trifluoromethyl)phenyl]-2,5-dihydro-[1,2,4]triazolo[4,3-a]pyrimidine-6-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H28 F3 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2025-08-28 _chem_comp.pdbx_modified_date 2025-12-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 541.545 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JN2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SI4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JN2 C1 C1 C 0 1 N N N N N N 100.414 -20.238 4.057 -1.620 1.942 -1.190 C1 A1JN2 1 A1JN2 C2 C2 C 0 1 N N N N N N 100.994 -21.425 3.446 -0.719 1.207 -0.387 C2 A1JN2 2 A1JN2 C3 C3 C 0 1 N N N N N N 100.643 -21.822 2.101 0.595 1.202 -0.700 C3 A1JN2 3 A1JN2 C4 C4 C 0 1 N N N N N N 99.748 -21.044 1.231 1.080 1.951 -1.915 C4 A1JN2 4 A1JN2 C5 C5 C 0 1 Y N N N N N 100.775 -23.499 0.318 2.668 -0.052 -0.432 C5 A1JN2 5 A1JN2 C6 C6 C 0 1 Y N N N N N 101.487 -23.314 -0.857 2.589 -1.092 -1.349 C6 A1JN2 6 A1JN2 C7 C7 C 0 1 Y N N N N N 101.054 -23.843 -2.056 3.745 -1.649 -1.861 C7 A1JN2 7 A1JN2 C8 C8 C 0 1 Y N N N N N 99.870 -24.589 -2.088 4.979 -1.173 -1.459 C8 A1JN2 8 A1JN2 C9 C9 C 0 1 Y N N N N N 99.152 -24.787 -0.908 5.061 -0.138 -0.545 C9 A1JN2 9 A1JN2 C10 C10 C 0 1 Y N N N N N 99.583 -24.248 0.288 3.909 0.427 -0.035 C10 A1JN2 10 A1JN2 C12 C11 C 0 1 N N N N N N 102.308 -23.570 2.173 1.162 0.426 1.440 C12 A1JN2 11 A1JN2 C15 C12 C 0 1 Y N N N N N 101.221 -23.056 5.280 -1.605 -0.960 0.403 C15 A1JN2 12 A1JN2 C20 C13 C 0 1 Y N N N N N 101.431 -22.975 6.645 -2.931 -1.356 0.398 C20 A1JN2 13 A1JN2 C19 C14 C 0 1 Y N N N N N 100.698 -23.825 7.500 -3.269 -2.639 0.022 C19 A1JN2 14 A1JN2 C18 C15 C 0 1 Y N N N N N 99.788 -24.756 7.001 -2.270 -3.539 -0.355 C18 A1JN2 15 A1JN2 C17 C16 C 0 1 Y N N N N N 99.564 -24.829 5.636 -0.934 -3.133 -0.348 C17 A1JN2 16 A1JN2 C16 C17 C 0 1 Y N N N N N 100.259 -24.006 4.780 -0.610 -1.847 0.031 C16 A1JN2 17 A1JN2 N5 N1 N 0 1 N N N N N N 98.688 -26.472 8.586 -2.887 -5.931 -1.057 N5 A1JN2 18 A1JN2 C26 C18 C 0 1 N N N N N N 99.144 -25.682 7.887 -2.614 -4.873 -0.747 C26 A1JN2 19 A1JN2 C21 C19 C 0 1 N N N N N N 102.431 -22.085 7.343 -4.007 -0.384 0.805 C21 A1JN2 20 A1JN2 C22 C20 C 0 1 N N N N N N 103.619 -22.926 7.769 -4.464 0.414 -0.418 C22 A1JN2 21 A1JN2 N4 N2 N 1 1 N N N N N N 104.772 -22.114 8.299 -5.565 1.308 -0.037 N4 A1JN2 22 A1JN2 C25 C21 C 0 1 N N N N N N 104.363 -21.225 9.421 -6.651 0.521 0.562 C25 A1JN2 23 A1JN2 C24 C22 C 0 1 N N N N N N 105.789 -23.113 8.750 -5.080 2.294 0.938 C24 A1JN2 24 A1JN2 C23 C23 C 0 1 N N N N N N 105.412 -21.346 7.188 -6.065 2.005 -1.230 C23 A1JN2 25 A1JN2 C14 C24 C 0 1 N N R N N N 101.890 -22.284 4.138 -1.243 0.445 0.810 C14 A1JN2 26 A1JN2 O1 O1 O 0 1 N N N N N N 99.721 -19.407 3.487 -2.089 2.987 -0.777 O1 A1JN2 27 A1JN2 O O2 O 0 1 N N N N N N 100.758 -20.172 5.353 -1.955 1.490 -2.416 O A1JN2 28 A1JN2 C C25 C 0 1 N N N N N N 100.166 -19.076 6.072 -2.769 2.343 -3.223 C A1JN2 29 A1JN2 N3 N3 N 0 1 N N N N N N 102.678 -23.134 3.430 -0.177 0.412 1.819 N3 A1JN2 30 A1JN2 C13 C26 C 0 1 N N N N N N 103.797 -23.876 3.720 -0.236 0.353 3.149 C13 A1JN2 31 A1JN2 O2 O3 O 0 1 N N N N N N 104.464 -23.759 4.762 -1.249 0.338 3.826 O2 A1JN2 32 A1JN2 N2 N4 N 0 1 N N N N N N 104.010 -24.685 2.668 1.036 0.310 3.610 N2 A1JN2 33 A1JN2 N1 N5 N 0 1 N N N N N N 103.071 -24.498 1.687 1.891 0.361 2.495 N1 A1JN2 34 A1JN2 N N6 N 0 1 N N N N N N 101.239 -22.937 1.551 1.498 0.514 0.088 N A1JN2 35 A1JN2 C11 C27 C 0 1 N N N N N N 97.956 -25.689 -0.930 6.409 0.377 -0.110 C11 A1JN2 36 A1JN2 F2 F1 F 0 1 N N N N N N 98.338 -26.979 -0.944 6.518 1.732 -0.438 F2 A1JN2 37 A1JN2 F1 F2 F 0 1 N N N N N N 97.197 -25.505 -2.019 6.544 0.219 1.273 F1 A1JN2 38 A1JN2 F F3 F 0 1 N N N N N N 97.173 -25.547 0.146 7.416 -0.343 -0.762 F A1JN2 39 A1JN2 H1 H1 H 0 1 N N N N N N 99.344 -20.188 1.792 1.380 2.958 -1.625 H1 A1JN2 40 A1JN2 H2 H2 H 0 1 N N N N N N 100.311 -20.678 0.359 1.933 1.428 -2.348 H2 A1JN2 41 A1JN2 H3 H3 H 0 1 N N N N N N 98.920 -21.684 0.891 0.277 2.008 -2.650 H3 A1JN2 42 A1JN2 H4 H4 H 0 1 N N N N N N 102.403 -22.742 -0.834 1.625 -1.464 -1.663 H4 A1JN2 43 A1JN2 H5 H5 H 0 1 N N N N N N 101.623 -23.683 -2.960 3.684 -2.457 -2.574 H5 A1JN2 44 A1JN2 H6 H6 H 0 1 N N N N N N 99.515 -25.008 -3.018 5.882 -1.610 -1.860 H6 A1JN2 45 A1JN2 H7 H7 H 0 1 N N N N N N 99.011 -24.399 1.192 3.974 1.235 0.679 H7 A1JN2 46 A1JN2 H8 H8 H 0 1 N N N N N N 100.845 -23.753 8.567 -4.304 -2.947 0.019 H8 A1JN2 47 A1JN2 H9 H9 H 0 1 N N N N N N 98.844 -25.532 5.244 -0.157 -3.824 -0.639 H9 A1JN2 48 A1JN2 H10 H10 H 0 1 N N N N N N 100.081 -24.073 3.717 0.423 -1.531 0.037 H10 A1JN2 49 A1JN2 H11 H11 H 0 1 N N N N N N 102.765 -21.294 6.655 -4.854 -0.931 1.219 H11 A1JN2 50 A1JN2 H12 H12 H 0 1 N N N N N N 101.965 -21.628 8.228 -3.614 0.300 1.558 H12 A1JN2 51 A1JN2 H13 H13 H 0 1 N N N N N N 103.290 -23.619 8.557 -3.631 1.005 -0.799 H13 A1JN2 52 A1JN2 H14 H14 H 0 1 N N N N N N 103.969 -23.500 6.898 -4.805 -0.273 -1.193 H14 A1JN2 53 A1JN2 H15 H15 H 0 1 N N N N N N 103.898 -21.827 10.216 -6.280 0.004 1.447 H15 A1JN2 54 A1JN2 H16 H16 H 0 1 N N N N N N 105.248 -20.710 9.822 -7.468 1.184 0.845 H16 A1JN2 55 A1JN2 H17 H17 H 0 1 N N N N N N 103.641 -20.481 9.054 -7.011 -0.211 -0.162 H17 A1JN2 56 A1JN2 H18 H18 H 0 1 N N N N N N 105.374 -23.714 9.573 -4.261 2.866 0.500 H18 A1JN2 57 A1JN2 H19 H19 H 0 1 N N N N N N 106.052 -23.773 7.910 -5.892 2.969 1.207 H19 A1JN2 58 A1JN2 H20 H20 H 0 1 N N N N N N 106.690 -22.587 9.098 -4.726 1.778 1.831 H20 A1JN2 59 A1JN2 H21 H21 H 0 1 N N N N N N 106.252 -20.757 7.585 -6.456 1.275 -1.939 H21 A1JN2 60 A1JN2 H22 H22 H 0 1 N N N N N N 105.783 -22.046 6.425 -6.860 2.693 -0.942 H22 A1JN2 61 A1JN2 H23 H23 H 0 1 N N N N N N 104.672 -20.670 6.736 -5.251 2.562 -1.693 H23 A1JN2 62 A1JN2 H24 H24 H 0 1 N N N N N N 102.584 -21.605 4.656 -2.121 0.950 1.214 H24 A1JN2 63 A1JN2 H25 H25 H 0 1 N N N N N N 100.501 -19.100 7.119 -3.045 1.822 -4.140 H25 A1JN2 64 A1JN2 H26 H26 H 0 1 N N N N N N 100.474 -18.126 5.610 -3.671 2.612 -2.673 H26 A1JN2 65 A1JN2 H27 H27 H 0 1 N N N N N N 99.070 -19.163 6.036 -2.212 3.247 -3.472 H27 A1JN2 66 A1JN2 H28 H28 H 0 1 N N N N N N 104.761 -25.342 2.608 1.307 0.255 4.540 H28 A1JN2 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JN2 C8 C7 DOUB Y N 1 A1JN2 C8 C9 SING Y N 2 A1JN2 C7 C6 SING Y N 3 A1JN2 F1 C11 SING N N 4 A1JN2 F2 C11 SING N N 5 A1JN2 C11 C9 SING N N 6 A1JN2 C11 F SING N N 7 A1JN2 C9 C10 DOUB Y N 8 A1JN2 C6 C5 DOUB Y N 9 A1JN2 C10 C5 SING Y N 10 A1JN2 C5 N SING N N 11 A1JN2 C4 C3 SING N N 12 A1JN2 N C3 SING N N 13 A1JN2 N C12 SING N N 14 A1JN2 N1 C12 DOUB N N 15 A1JN2 N1 N2 SING N N 16 A1JN2 C3 C2 DOUB N N 17 A1JN2 C12 N3 SING N N 18 A1JN2 N2 C13 SING N N 19 A1JN2 N3 C13 SING N N 20 A1JN2 N3 C14 SING N N 21 A1JN2 C2 C1 SING N N 22 A1JN2 C2 C14 SING N N 23 A1JN2 O1 C1 DOUB N N 24 A1JN2 C13 O2 DOUB N N 25 A1JN2 C1 O SING N N 26 A1JN2 C14 C15 SING N N 27 A1JN2 C16 C15 DOUB Y N 28 A1JN2 C16 C17 SING Y N 29 A1JN2 C15 C20 SING Y N 30 A1JN2 O C SING N N 31 A1JN2 C17 C18 DOUB Y N 32 A1JN2 C20 C21 SING N N 33 A1JN2 C20 C19 DOUB Y N 34 A1JN2 C18 C19 SING Y N 35 A1JN2 C18 C26 SING N N 36 A1JN2 C23 N4 SING N N 37 A1JN2 C21 C22 SING N N 38 A1JN2 C22 N4 SING N N 39 A1JN2 C26 N5 TRIP N N 40 A1JN2 N4 C24 SING N N 41 A1JN2 N4 C25 SING N N 42 A1JN2 C4 H1 SING N N 43 A1JN2 C4 H2 SING N N 44 A1JN2 C4 H3 SING N N 45 A1JN2 C6 H4 SING N N 46 A1JN2 C7 H5 SING N N 47 A1JN2 C8 H6 SING N N 48 A1JN2 C10 H7 SING N N 49 A1JN2 C19 H8 SING N N 50 A1JN2 C17 H9 SING N N 51 A1JN2 C16 H10 SING N N 52 A1JN2 C21 H11 SING N N 53 A1JN2 C21 H12 SING N N 54 A1JN2 C22 H13 SING N N 55 A1JN2 C22 H14 SING N N 56 A1JN2 C25 H15 SING N N 57 A1JN2 C25 H16 SING N N 58 A1JN2 C25 H17 SING N N 59 A1JN2 C24 H18 SING N N 60 A1JN2 C24 H19 SING N N 61 A1JN2 C24 H20 SING N N 62 A1JN2 C23 H21 SING N N 63 A1JN2 C23 H22 SING N N 64 A1JN2 C23 H23 SING N N 65 A1JN2 C14 H24 SING N N 66 A1JN2 C H25 SING N N 67 A1JN2 C H26 SING N N 68 A1JN2 C H27 SING N N 69 A1JN2 N2 H28 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JN2 InChI InChI 1.06 "InChI=1S/C27H27F3N6O3/c1-16-22(24(37)39-5)23(21-10-9-17(15-31)13-18(21)11-12-36(2,3)4)35-25(32-33-26(35)38)34(16)20-8-6-7-19(14-20)27(28,29)30/h6-10,13-14,23H,11-12H2,1-5H3/p+1/t23-/m1/s1" A1JN2 InChIKey InChI 1.06 IHTRPSMRGYWUIM-HSZRJFAPSA-O A1JN2 SMILES_CANONICAL CACTVS 3.385 "COC(=O)C1=C(C)N(c2cccc(c2)C(F)(F)F)C3=NNC(=O)N3[C@@H]1c4ccc(cc4CC[N+](C)(C)C)C#N" A1JN2 SMILES CACTVS 3.385 "COC(=O)C1=C(C)N(c2cccc(c2)C(F)(F)F)C3=NNC(=O)N3[CH]1c4ccc(cc4CC[N+](C)(C)C)C#N" A1JN2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C([C@H](N2C(=O)NN=C2N1c3cccc(c3)C(F)(F)F)c4ccc(cc4CC[N+](C)(C)C)C#N)C(=O)OC" A1JN2 SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(N2C(=O)NN=C2N1c3cccc(c3)C(F)(F)F)c4ccc(cc4CC[N+](C)(C)C)C#N)C(=O)OC" # _pdbx_chem_comp_identifier.comp_id A1JN2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[5-cyano-2-[(5~{R})-6-methoxycarbonyl-7-methyl-3-oxidanylidene-8-[3-(trifluoromethyl)phenyl]-2,5-dihydro-[1,2,4]triazolo[4,3-a]pyrimidin-5-yl]phenyl]ethyl-trimethyl-azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JN2 "Create component" 2025-08-28 PDBE A1JN2 "Initial release" 2025-12-10 RCSB #