data_A1JN3 # _chem_comp.id A1JN3 _chem_comp.name "(7~{S},9~{S})-7-[(2~{R},4~{S},5~{S},6~{S})-4-azanyl-6-methyl-5-oxidanyl-oxan-2-yl]oxy-4-methoxy-6,9,11-tris(oxidanyl)-9-[(1~{R})-1-oxidanylethyl]-8,10-dihydro-7~{H}-tetracene-5,12-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 N O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-28 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 529.536 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JN3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SI5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JN3 C1 C1 C 0 1 N N N N N N -10.816 36.093 10.767 -6.224 0.616 0.873 C1 A1JN3 1 A1JN3 C2 C2 C 0 1 N N S N N N -11.424 35.486 9.531 -4.904 0.997 0.200 C2 A1JN3 2 A1JN3 C3 C3 C 0 1 N N S N N N -12.497 36.344 8.871 -5.177 1.983 -0.939 C3 A1JN3 3 A1JN3 C4 C4 C 0 1 N N S N N N -12.802 35.813 7.468 -3.846 2.405 -1.569 C4 A1JN3 4 A1JN3 C5 C5 C 0 1 N N N N N N -11.539 35.688 6.633 -2.948 3.006 -0.483 C5 A1JN3 5 A1JN3 C6 C6 C 0 1 N N R N N N -10.482 34.928 7.399 -2.761 1.980 0.638 C6 A1JN3 6 A1JN3 O7 O1 O 0 1 N N N N N N -10.276 35.468 8.686 -4.038 1.607 1.159 O7 A1JN3 7 A1JN3 O8 O2 O 0 1 N N N N N N -10.839 33.585 7.551 -2.101 0.823 0.121 O8 A1JN3 8 A1JN3 C9 C7 C 0 1 N N S N N N -9.549 33.019 7.625 -1.613 -0.067 1.127 C9 A1JN3 9 A1JN3 C10 C8 C 0 1 N N N N N N -9.158 32.570 9.010 -2.589 -1.230 1.284 C10 A1JN3 10 A1JN3 C11 C9 C 0 1 N N S N N N -10.182 31.616 9.557 -2.516 -2.095 0.020 C11 A1JN3 11 A1JN3 C12 C10 C 0 1 N N N N N N -10.200 30.328 8.668 -1.164 -2.806 0.003 C12 A1JN3 12 A1JN3 C13 C11 C 0 1 Y N N N N N -9.818 30.572 7.207 -0.043 -1.820 0.209 C13 A1JN3 13 A1JN3 C14 C12 C 0 1 Y N N N N N -9.513 31.834 6.710 -0.248 -0.566 0.729 C14 A1JN3 14 A1JN3 C15 C13 C 0 1 Y N N N N N -9.177 32.015 5.366 0.833 0.308 0.904 C15 A1JN3 15 A1JN3 C16 C14 C 0 1 Y N N N N N -9.215 30.945 4.479 2.121 -0.082 0.549 C16 A1JN3 16 A1JN3 C17 C15 C 0 1 Y N N N N N -9.546 29.702 4.938 2.332 -1.370 0.013 C17 A1JN3 17 A1JN3 C18 C16 C 0 1 Y N N N N N -9.785 29.508 6.303 1.248 -2.228 -0.152 C18 A1JN3 18 A1JN3 O19 O3 O 0 1 N N N N N N -9.840 28.238 6.792 1.443 -3.468 -0.665 O19 A1JN3 19 A1JN3 C20 C17 C 0 1 N N N N N N -9.679 28.602 4.027 3.694 -1.788 -0.366 C20 A1JN3 20 A1JN3 O21 O4 O 0 1 N N N N N N -10.115 27.499 4.422 3.938 -2.958 -0.590 O21 A1JN3 21 A1JN3 C22 C18 C 0 1 Y N N N N N -9.236 28.798 2.637 4.759 -0.767 -0.470 C22 A1JN3 22 A1JN3 C23 C19 C 0 1 Y N N N N N -8.846 30.054 2.172 4.547 0.518 0.065 C23 A1JN3 23 A1JN3 C24 C20 C 0 1 N N N N N N -8.869 31.166 3.086 3.265 0.832 0.726 C24 A1JN3 24 A1JN3 O25 O5 O 0 1 N N N N N N -8.473 32.278 2.706 3.153 1.833 1.407 O25 A1JN3 25 A1JN3 C26 C21 C 0 1 Y N N N N N -8.376 30.195 0.833 5.551 1.483 -0.034 C26 A1JN3 26 A1JN3 C27 C22 C 0 1 Y N N N N N -8.343 29.100 -0.013 6.753 1.164 -0.662 C27 A1JN3 27 A1JN3 C28 C23 C 0 1 Y N N N N N -8.737 27.863 0.480 6.954 -0.097 -1.184 C28 A1JN3 28 A1JN3 C29 C24 C 0 1 Y N N N N N -9.180 27.702 1.791 5.966 -1.065 -1.092 C29 A1JN3 29 A1JN3 O30 O6 O 0 1 N N N N N N -7.880 31.436 0.489 5.358 2.724 0.478 O30 A1JN3 30 A1JN3 C31 C25 C 0 1 N N N N N N -7.441 31.650 -0.878 6.431 3.657 0.338 C31 A1JN3 31 A1JN3 O32 O7 O 0 1 N N N N N N -8.754 33.288 4.910 0.623 1.544 1.422 O32 A1JN3 32 A1JN3 C33 C26 C 0 1 N N R N N N -9.843 31.357 11.036 -3.642 -3.131 0.038 C33 A1JN3 33 A1JN3 C34 C27 C 0 1 N N N N N N -11.068 31.365 11.925 -3.490 -4.070 -1.161 C34 A1JN3 34 A1JN3 O35 O8 O 0 1 N N N N N N -8.890 30.324 11.352 -3.575 -3.888 1.248 O35 A1JN3 35 A1JN3 O36 O9 O 0 1 N N N N N N -11.396 32.387 9.522 -2.640 -1.268 -1.138 O36 A1JN3 36 A1JN3 N37 N1 N 0 1 N N N N N N -13.721 36.756 6.756 -4.093 3.407 -2.614 N37 A1JN3 37 A1JN3 O38 O10 O 0 1 N N N N N N -12.062 37.700 8.777 -5.850 3.133 -0.424 O38 A1JN3 38 A1JN3 H1 H1 H 0 1 N N N N N N -11.585 36.184 11.548 -6.884 0.151 0.141 H1 A1JN3 39 A1JN3 H2 H2 H 0 1 N N N N N N -10.001 35.449 11.129 -6.029 -0.086 1.684 H2 A1JN3 40 A1JN3 H3 H3 H 0 1 N N N N N N -10.417 37.090 10.528 -6.699 1.512 1.273 H3 A1JN3 41 A1JN3 H4 H4 H 0 1 N N N N N N -11.806 34.475 9.736 -4.429 0.101 -0.201 H4 A1JN3 42 A1JN3 H5 H5 H 0 1 N N N N N N -13.415 36.285 9.475 -5.801 1.504 -1.694 H5 A1JN3 43 A1JN3 H6 H6 H 0 1 N N N N N N -13.280 34.826 7.553 -3.357 1.535 -2.006 H6 A1JN3 44 A1JN3 H7 H7 H 0 1 N N N N N N -11.162 36.693 6.392 -1.978 3.259 -0.911 H7 A1JN3 45 A1JN3 H8 H8 H 0 1 N N N N N N -11.771 35.150 5.702 -3.415 3.905 -0.080 H8 A1JN3 46 A1JN3 H9 H9 H 0 1 N N N N N N -9.544 34.991 6.829 -2.158 2.418 1.434 H9 A1JN3 47 A1JN3 H10 H10 H 0 1 N N N N N N -8.805 33.750 7.276 -1.537 0.469 2.073 H10 A1JN3 48 A1JN3 H11 H11 H 0 1 N N N N N N -8.181 32.067 8.966 -2.312 -1.827 2.154 H11 A1JN3 49 A1JN3 H12 H12 H 0 1 N N N N N N -9.090 33.447 9.670 -3.602 -0.847 1.408 H12 A1JN3 50 A1JN3 H13 H13 H 0 1 N N N N N N -11.215 29.905 8.694 -1.139 -3.550 0.800 H13 A1JN3 51 A1JN3 H14 H14 H 0 1 N N N N N N -9.490 29.604 9.094 -1.032 -3.303 -0.957 H14 A1JN3 52 A1JN3 H15 H15 H 0 1 N N N N N N -9.954 27.626 6.074 1.627 -4.145 0.001 H15 A1JN3 53 A1JN3 H16 H16 H 0 1 N N N N N N -8.017 29.206 -1.037 7.531 1.908 -0.740 H16 A1JN3 54 A1JN3 H17 H17 H 0 1 N N N N N N -8.699 27.002 -0.171 7.890 -0.333 -1.668 H17 A1JN3 55 A1JN3 H18 H18 H 0 1 N N N N N N -9.479 26.727 2.147 6.133 -2.049 -1.504 H18 A1JN3 56 A1JN3 H19 H19 H 0 1 N N N N N N -7.076 32.682 -0.989 6.146 4.608 0.789 H19 A1JN3 57 A1JN3 H20 H20 H 0 1 N N N N N N -6.630 30.946 -1.117 7.318 3.269 0.839 H20 A1JN3 58 A1JN3 H21 H21 H 0 1 N N N N N N -8.285 31.484 -1.564 6.647 3.807 -0.719 H21 A1JN3 59 A1JN3 H22 H22 H 0 1 N N N N N N -8.544 33.240 3.985 0.689 1.582 2.386 H22 A1JN3 60 A1JN3 H23 H23 H 0 1 N N N N N N -9.324 32.282 11.328 -4.604 -2.622 -0.019 H23 A1JN3 61 A1JN3 H24 H24 H 0 1 N N N N N N -10.767 31.176 12.966 -4.293 -4.807 -1.148 H24 A1JN3 62 A1JN3 H25 H25 H 0 1 N N N N N N -11.563 32.345 11.859 -3.542 -3.492 -2.084 H25 A1JN3 63 A1JN3 H26 H26 H 0 1 N N N N N N -11.765 30.580 11.596 -2.528 -4.579 -1.104 H26 A1JN3 64 A1JN3 H27 H27 H 0 1 N N N N N N -8.777 30.274 12.294 -4.261 -4.565 1.327 H27 A1JN3 65 A1JN3 H28 H28 H 0 1 N N N N N N -11.305 33.147 10.084 -2.602 -1.752 -1.974 H28 A1JN3 66 A1JN3 H29 H29 H 0 1 N N N N N N -14.565 36.860 7.282 -3.229 3.701 -3.045 H29 A1JN3 67 A1JN3 H30 H30 H 0 1 N N N N N N -13.276 37.646 6.660 -4.740 3.057 -3.305 H30 A1JN3 68 A1JN3 H32 H32 H 0 1 N N N N N N -11.872 38.033 9.646 -6.700 2.938 -0.006 H32 A1JN3 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JN3 C31 O30 SING N N 1 A1JN3 C27 C28 DOUB Y N 2 A1JN3 C27 C26 SING Y N 3 A1JN3 C28 C29 SING Y N 4 A1JN3 O30 C26 SING N N 5 A1JN3 C26 C23 DOUB Y N 6 A1JN3 C29 C22 DOUB Y N 7 A1JN3 C23 C22 SING Y N 8 A1JN3 C23 C24 SING N N 9 A1JN3 C22 C20 SING N N 10 A1JN3 O25 C24 DOUB N N 11 A1JN3 C24 C16 SING N N 12 A1JN3 C20 O21 DOUB N N 13 A1JN3 C20 C17 SING N N 14 A1JN3 C16 C17 DOUB Y N 15 A1JN3 C16 C15 SING Y N 16 A1JN3 O32 C15 SING N N 17 A1JN3 C17 C18 SING Y N 18 A1JN3 C15 C14 DOUB Y N 19 A1JN3 C18 O19 SING N N 20 A1JN3 C18 C13 DOUB Y N 21 A1JN3 C5 C6 SING N N 22 A1JN3 C5 C4 SING N N 23 A1JN3 C14 C13 SING Y N 24 A1JN3 C14 C9 SING N N 25 A1JN3 N37 C4 SING N N 26 A1JN3 C13 C12 SING N N 27 A1JN3 C6 O8 SING N N 28 A1JN3 C6 O7 SING N N 29 A1JN3 C4 C3 SING N N 30 A1JN3 O8 C9 SING N N 31 A1JN3 C9 C10 SING N N 32 A1JN3 C12 C11 SING N N 33 A1JN3 O7 C2 SING N N 34 A1JN3 O38 C3 SING N N 35 A1JN3 C3 C2 SING N N 36 A1JN3 C10 C11 SING N N 37 A1JN3 O36 C11 SING N N 38 A1JN3 C2 C1 SING N N 39 A1JN3 C11 C33 SING N N 40 A1JN3 C33 O35 SING N N 41 A1JN3 C33 C34 SING N N 42 A1JN3 C1 H1 SING N N 43 A1JN3 C1 H2 SING N N 44 A1JN3 C1 H3 SING N N 45 A1JN3 C2 H4 SING N N 46 A1JN3 C3 H5 SING N N 47 A1JN3 C4 H6 SING N N 48 A1JN3 C5 H7 SING N N 49 A1JN3 C5 H8 SING N N 50 A1JN3 C6 H9 SING N N 51 A1JN3 C9 H10 SING N N 52 A1JN3 C10 H11 SING N N 53 A1JN3 C10 H12 SING N N 54 A1JN3 C12 H13 SING N N 55 A1JN3 C12 H14 SING N N 56 A1JN3 O19 H15 SING N N 57 A1JN3 C27 H16 SING N N 58 A1JN3 C28 H17 SING N N 59 A1JN3 C29 H18 SING N N 60 A1JN3 C31 H19 SING N N 61 A1JN3 C31 H20 SING N N 62 A1JN3 C31 H21 SING N N 63 A1JN3 O32 H22 SING N N 64 A1JN3 C33 H23 SING N N 65 A1JN3 C34 H24 SING N N 66 A1JN3 C34 H25 SING N N 67 A1JN3 C34 H26 SING N N 68 A1JN3 O35 H27 SING N N 69 A1JN3 O36 H28 SING N N 70 A1JN3 N37 H29 SING N N 71 A1JN3 N37 H30 SING N N 72 A1JN3 O38 H32 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JN3 InChI InChI 1.06 "InChI=1S/C27H31NO10/c1-10-22(30)14(28)7-17(37-10)38-16-9-27(35,11(2)29)8-13-19(16)26(34)21-20(24(13)32)23(31)12-5-4-6-15(36-3)18(12)25(21)33/h4-6,10-11,14,16-17,22,29-30,32,34-35H,7-9,28H2,1-3H3/t10-,11+,14-,16-,17-,22+,27-/m0/s1" A1JN3 InChIKey InChI 1.06 HJEZFVLKJYFNQW-OXCIRTNUSA-N A1JN3 SMILES_CANONICAL CACTVS 3.385 "COc1cccc2C(=O)c3c(O)c4C[C@](O)(C[C@H](O[C@H]5C[C@H](N)[C@H](O)[C@H](C)O5)c4c(O)c3C(=O)c12)[C@@H](C)O" A1JN3 SMILES CACTVS 3.385 "COc1cccc2C(=O)c3c(O)c4C[C](O)(C[CH](O[CH]5C[CH](N)[CH](O)[CH](C)O5)c4c(O)c3C(=O)c12)[CH](C)O" A1JN3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)([C@@H](C)O)O)N)O" A1JN3 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(CC(O1)OC2CC(Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(C)O)O)N)O" # _pdbx_chem_comp_identifier.comp_id A1JN3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(7~{S},9~{S})-7-[(2~{R},4~{S},5~{S},6~{S})-4-azanyl-6-methyl-5-oxidanyl-oxan-2-yl]oxy-4-methoxy-6,9,11-tris(oxidanyl)-9-[(1~{R})-1-oxidanylethyl]-8,10-dihydro-7~{H}-tetracene-5,12-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JN3 "Create component" 2025-08-28 PDBE A1JN3 "Initial release" 2025-12-24 RCSB #