data_A1JN4 # _chem_comp.id A1JN4 _chem_comp.name "TRANS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H36 Fe N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-28 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 636.518 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JN4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SEJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JN4 NB N1 N 0 1 N N S N N N 165.563 133.116 155.432 1.903 -1.533 -0.830 NB A1JN4 1 A1JN4 ND N2 N 0 1 N N R N N N 164.654 134.240 151.633 -0.001 1.291 -0.413 ND A1JN4 2 A1JN4 C1A C1 C 0 1 Y N N N N N 163.660 131.534 152.034 -1.824 -0.812 0.674 C1A A1JN4 3 A1JN4 C1B C2 C 0 1 N N N N N N 164.969 132.095 156.039 1.431 -2.790 -1.184 C1B A1JN4 4 A1JN4 C1C C3 C 0 1 Y N N N N N 166.748 135.794 155.091 3.484 -0.064 1.223 C1C A1JN4 5 A1JN4 C1D C4 C 0 1 N N N N N N 164.595 135.603 151.421 0.491 2.563 -0.112 C1D A1JN4 6 A1JN4 C2A C5 C 0 1 Y N N N N N 162.910 130.318 152.386 -2.501 -1.870 1.211 C2A A1JN4 7 A1JN4 C2B C6 C 0 1 N N N N N N 165.429 132.060 157.429 2.484 -3.358 -1.913 C2B A1JN4 8 A1JN4 C2C C7 C 0 1 Y N N N N N 167.002 137.208 155.084 3.954 0.602 2.329 C2C A1JN4 9 A1JN4 C2D C8 C 0 1 N N S N N N 163.968 135.727 150.016 -0.380 3.511 -0.899 C2D A1JN4 10 A1JN4 C3A C9 C 0 1 Y N N N N N 162.928 129.999 153.659 -1.725 -3.033 0.991 C3A A1JN4 11 A1JN4 C3B C10 C 0 1 N N N N N N 166.277 133.087 157.474 3.627 -2.637 -1.636 C3B A1JN4 12 A1JN4 C3C C11 C 0 1 Y N N N N N 166.338 137.667 153.990 3.166 1.766 2.511 C3C A1JN4 13 A1JN4 C3D C12 C 0 1 N N S N N N 163.769 134.564 149.590 -1.654 2.680 -1.182 C3D A1JN4 14 A1JN4 C4A C13 C 0 1 Y N N N N N 163.750 131.076 154.237 -0.610 -2.679 0.277 C4A A1JN4 15 A1JN4 C4B C14 C 0 1 N N N N N N 166.419 133.818 156.253 3.286 -1.619 -0.737 C4B A1JN4 16 A1JN4 C4C C15 C 0 1 Y N N N N N 165.657 136.616 153.261 2.184 1.759 1.567 C4C A1JN4 17 A1JN4 C4D C16 C 0 1 N N N N N N 164.105 133.543 150.626 -1.391 1.356 -0.535 C4D A1JN4 18 A1JN4 CAA C17 C 0 1 N N N N N N 162.182 129.500 151.339 -3.833 -1.809 1.913 CAA A1JN4 19 A1JN4 CAB C18 C 0 1 N N N N N N 167.124 133.625 158.648 4.999 -2.900 -2.200 CAB A1JN4 20 A1JN4 CAC C19 C 0 1 N N N N N N 166.180 139.062 153.390 3.376 2.825 3.563 CAC A1JN4 21 A1JN4 CAD C20 C 0 1 N N N N N N 163.146 133.820 148.322 -2.880 3.374 -0.572 CAD A1JN4 22 A1JN4 CBA C21 C 0 1 N N N N N N 161.458 130.512 150.365 -4.957 -1.998 0.892 CBA A1JN4 23 A1JN4 CBB C22 C 0 1 N N N N N N 167.949 132.895 159.244 5.224 -2.014 -3.427 CBB A1JN4 24 A1JN4 CBC C23 C 0 1 N N N N N N 166.592 140.034 154.074 4.309 3.908 3.016 CBC A1JN4 25 A1JN4 CBD C24 C 0 1 N N N N N N 164.123 133.345 147.280 -3.790 3.600 -1.802 CBD A1JN4 26 A1JN4 CGA C25 C 0 1 N N N N N N 160.130 129.883 149.927 -6.289 -1.938 1.594 CGA A1JN4 27 A1JN4 CGD C26 C 0 1 N N N N N N 165.355 133.866 147.742 -3.207 2.671 -2.853 CGD A1JN4 28 A1JN4 CHA C27 C 0 1 N N N N N N 163.850 132.154 150.852 -2.224 0.474 0.065 CHA A1JN4 29 A1JN4 CHB C28 C 0 1 N N N N N N 164.046 131.165 155.557 0.283 -3.325 -0.613 CHB A1JN4 30 A1JN4 CHC C29 C 0 1 N N N N N N 167.219 134.919 156.019 3.995 -0.978 0.274 CHC A1JN4 31 A1JN4 CHD C30 C 0 1 N N N N N N 164.886 136.768 152.088 1.450 2.795 0.809 CHD A1JN4 32 A1JN4 CMA C31 C 0 1 N N N N N N 162.272 128.815 154.367 -2.067 -4.424 1.461 CMA A1JN4 33 A1JN4 CMB C32 C 0 1 N N N N N N 164.995 131.047 158.511 2.385 -4.545 -2.835 CMB A1JN4 34 A1JN4 CMC C33 C 0 1 N N N N N N 167.851 137.988 156.129 5.107 0.170 3.199 CMC A1JN4 35 A1JN4 CMD C34 C 0 1 N N N N N N 164.541 136.887 149.162 0.306 3.915 -2.206 CMD A1JN4 36 A1JN4 NA N3 N 0 1 Y N N N N N 164.149 131.951 153.230 -0.565 -1.312 0.492 NA A1JN4 37 A1JN4 NC N4 N 0 1 Y N N N N N 165.964 135.542 153.994 2.213 0.469 1.115 NC A1JN4 38 A1JN4 O1A O1 O 0 1 N N N N N N 159.613 130.736 149.220 -6.335 -1.762 2.788 O1A A1JN4 39 A1JN4 O1D O2 O 0 1 N N N N N N 165.154 134.141 148.983 -1.887 2.565 -2.605 O1D A1JN4 40 A1JN4 O2A O3 O 0 1 N N N N N N 160.264 128.666 149.781 -7.424 -2.079 0.892 O2A A1JN4 41 A1JN4 O2D O4 O 0 1 N N N N N N 166.435 133.858 147.285 -3.815 2.128 -3.744 O2D A1JN4 42 A1JN4 OND O5 O 0 1 N N N N N N 162.595 136.282 150.190 -0.696 4.668 -0.121 OND A1JN4 43 A1JN4 FE FE1 FE 0 0 N N S N N N 165.314 133.635 153.531 0.894 -0.256 0.018 FE A1JN4 44 A1JN4 HAA2 H1 H 0 0 N N N N N N 161.440 128.847 151.822 -3.886 -2.600 2.662 HAA2 A1JN4 45 A1JN4 HAA1 H2 H 0 0 N N N N N N 162.900 128.886 150.776 -3.944 -0.840 2.400 HAA1 A1JN4 46 A1JN4 H1 H3 H 0 1 N N N N N N 167.693 134.481 158.255 5.752 -2.673 -1.445 H1 A1JN4 47 A1JN4 HAB H4 H 0 1 N N N N N N 166.412 133.976 159.410 5.079 -3.948 -2.489 HAB A1JN4 48 A1JN4 HAC H5 H 0 1 N N N N N N 166.726 139.075 152.435 2.418 3.271 3.827 HAC A1JN4 49 A1JN4 H2 H6 H 0 1 N N N N N N 165.108 139.221 153.202 3.823 2.374 4.448 H2 A1JN4 50 A1JN4 HAD2 H7 H 0 0 N N N N N N 162.448 134.517 147.834 -3.368 2.726 0.156 HAD2 A1JN4 51 A1JN4 HAD1 H8 H 0 0 N N N N N N 162.592 132.942 148.687 -2.599 4.323 -0.116 HAD1 A1JN4 52 A1JN4 HBA1 H9 H 0 0 N N N N N N 162.090 130.699 149.485 -4.904 -1.207 0.144 HBA1 A1JN4 53 A1JN4 HBA2 H10 H 0 0 N N N N N N 161.267 131.461 150.888 -4.846 -2.967 0.405 HBA2 A1JN4 54 A1JN4 HBB1 H11 H 0 0 N N N N N N 168.441 133.472 160.041 6.217 -2.204 -3.835 HBB1 A1JN4 55 A1JN4 HBB2 H12 H 0 0 N N N N N N 167.425 132.034 159.684 4.471 -2.241 -4.182 HBB2 A1JN4 56 A1JN4 H3 H13 H 0 1 N N N N N N 168.706 132.538 158.530 5.144 -0.966 -3.138 H3 A1JN4 57 A1JN4 HBC2 H14 H 0 0 N N N N N N 166.416 140.970 153.524 4.462 4.674 3.777 HBC2 A1JN4 58 A1JN4 HBC1 H15 H 0 0 N N N N N N 166.051 140.064 155.031 5.268 3.462 2.752 HBC1 A1JN4 59 A1JN4 H4 H16 H 0 1 N N N N N N 167.669 139.918 154.265 3.862 4.360 2.131 H4 A1JN4 60 A1JN4 HBD1 H17 H 0 0 N N N N N N 163.870 133.747 146.288 -4.820 3.323 -1.574 HBD1 A1JN4 61 A1JN4 HBD2 H18 H 0 0 N N N N N N 164.150 132.246 147.234 -3.736 4.637 -2.134 HBD2 A1JN4 62 A1JN4 HHA H19 H 0 1 N N N N N N 163.804 131.528 149.973 -3.271 0.733 0.102 HHA A1JN4 63 A1JN4 HHB H20 H 0 1 N N N N N N 163.556 130.500 156.253 0.046 -4.345 -0.876 HHB A1JN4 64 A1JN4 HHC H21 H 0 1 N N N N N N 168.154 135.074 156.537 5.050 -1.202 0.340 HHC A1JN4 65 A1JN4 HHD H22 H 0 1 N N N N N N 164.549 137.733 151.739 1.704 3.825 1.008 HHD A1JN4 66 A1JN4 HMA2 H23 H 0 0 N N N N N N 162.969 127.964 154.382 -2.656 -4.931 0.696 HMA2 A1JN4 67 A1JN4 HMA1 H24 H 0 0 N N N N N N 162.019 129.099 155.399 -1.149 -4.982 1.641 HMA1 A1JN4 68 A1JN4 HMA3 H25 H 0 0 N N N N N N 161.355 128.529 153.830 -2.644 -4.364 2.384 HMA3 A1JN4 69 A1JN4 HMB2 H26 H 0 0 N N N N N N 165.510 131.275 159.456 2.155 -4.203 -3.845 HMB2 A1JN4 70 A1JN4 HMB3 H27 H 0 0 N N N N N N 163.907 131.114 158.661 3.334 -5.081 -2.840 HMB3 A1JN4 71 A1JN4 HMB1 H28 H 0 0 N N N N N N 165.258 130.029 158.187 1.594 -5.210 -2.488 HMB1 A1JN4 72 A1JN4 HMC2 H29 H 0 0 N N N N N N 167.203 138.325 156.951 6.033 0.597 2.813 HMC2 A1JN4 73 A1JN4 HMC1 H30 H 0 0 N N N N N N 168.637 137.330 156.528 4.944 0.518 4.219 HMC1 A1JN4 74 A1JN4 HMC3 H31 H 0 0 N N N N N N 168.314 138.861 155.647 5.178 -0.918 3.193 HMC3 A1JN4 75 A1JN4 HMD2 H32 H 0 0 N N N N N N 164.613 137.795 149.778 1.221 4.463 -1.981 HMD2 A1JN4 76 A1JN4 HMD3 H33 H 0 0 N N N N N N 165.541 136.612 148.795 0.550 3.020 -2.779 HMD3 A1JN4 77 A1JN4 HMD1 H34 H 0 0 N N N N N N 163.875 137.076 148.307 -0.363 4.548 -2.787 HMD1 A1JN4 78 A1JN4 H5 H35 H 0 1 N N N N N N 159.878 128.401 148.954 -8.255 -2.033 1.386 H5 A1JN4 79 A1JN4 HND H36 H 0 1 N N N N N N 162.074 135.682 150.711 0.076 5.187 0.144 HND A1JN4 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JN4 CBD CGD SING N N 1 A1JN4 CBD CAD SING N N 2 A1JN4 O2D CGD DOUB N N 3 A1JN4 CGD O1D SING N N 4 A1JN4 CAD C3D SING N N 5 A1JN4 O1D C3D SING N N 6 A1JN4 CMD C2D SING N N 7 A1JN4 O1A CGA DOUB N N 8 A1JN4 C3D C2D SING N N 9 A1JN4 C3D C4D SING N N 10 A1JN4 O2A CGA SING N N 11 A1JN4 CGA CBA SING N N 12 A1JN4 C2D OND SING N N 13 A1JN4 C2D C1D SING N N 14 A1JN4 CBA CAA SING N N 15 A1JN4 C4D CHA DOUB N N 16 A1JN4 C4D ND SING N N 17 A1JN4 CHA C1A SING N N 18 A1JN4 CAA C2A SING N N 19 A1JN4 C1D ND SING N N 20 A1JN4 C1D CHD DOUB N N 21 A1JN4 ND FE SING N N 22 A1JN4 C1A C2A DOUB Y N 23 A1JN4 C1A NA SING Y N 24 A1JN4 CHD C4C SING N N 25 A1JN4 C2A C3A SING Y N 26 A1JN4 NA FE SING N N 27 A1JN4 NA C4A SING Y N 28 A1JN4 C4C C3C DOUB Y N 29 A1JN4 C4C NC SING Y N 30 A1JN4 CAC C3C SING N N 31 A1JN4 CAC CBC SING N N 32 A1JN4 FE NC SING N N 33 A1JN4 FE NB SING N N 34 A1JN4 C3A C4A DOUB Y N 35 A1JN4 C3A CMA SING N N 36 A1JN4 C3C C2C SING Y N 37 A1JN4 NC C1C SING Y N 38 A1JN4 C4A CHB SING N N 39 A1JN4 C2C C1C DOUB Y N 40 A1JN4 C2C CMC SING N N 41 A1JN4 C1C CHC SING N N 42 A1JN4 NB C1B SING N N 43 A1JN4 NB C4B SING N N 44 A1JN4 CHB C1B DOUB N N 45 A1JN4 CHC C4B DOUB N N 46 A1JN4 C1B C2B SING N N 47 A1JN4 C4B C3B SING N N 48 A1JN4 C2B C3B DOUB N N 49 A1JN4 C2B CMB SING N N 50 A1JN4 C3B CAB SING N N 51 A1JN4 CAB CBB SING N N 52 A1JN4 CAA HAA2 SING N N 53 A1JN4 CAA HAA1 SING N N 54 A1JN4 CAB H1 SING N N 55 A1JN4 CAB HAB SING N N 56 A1JN4 CAC HAC SING N N 57 A1JN4 CAC H2 SING N N 58 A1JN4 CAD HAD2 SING N N 59 A1JN4 CAD HAD1 SING N N 60 A1JN4 CBA HBA1 SING N N 61 A1JN4 CBA HBA2 SING N N 62 A1JN4 CBB HBB1 SING N N 63 A1JN4 CBB HBB2 SING N N 64 A1JN4 CBB H3 SING N N 65 A1JN4 CBC HBC2 SING N N 66 A1JN4 CBC HBC1 SING N N 67 A1JN4 CBC H4 SING N N 68 A1JN4 CBD HBD1 SING N N 69 A1JN4 CBD HBD2 SING N N 70 A1JN4 CHA HHA SING N N 71 A1JN4 CHB HHB SING N N 72 A1JN4 CHC HHC SING N N 73 A1JN4 CHD HHD SING N N 74 A1JN4 CMA HMA2 SING N N 75 A1JN4 CMA HMA1 SING N N 76 A1JN4 CMA HMA3 SING N N 77 A1JN4 CMB HMB2 SING N N 78 A1JN4 CMB HMB3 SING N N 79 A1JN4 CMB HMB1 SING N N 80 A1JN4 CMC HMC2 SING N N 81 A1JN4 CMC HMC1 SING N N 82 A1JN4 CMC HMC3 SING N N 83 A1JN4 CMD HMD2 SING N N 84 A1JN4 CMD HMD3 SING N N 85 A1JN4 CMD HMD1 SING N N 86 A1JN4 O2A H5 SING N N 87 A1JN4 OND HND SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JN4 InChI InChI 1.06 "InChI=1S/C34H36N4O5.Fe/c1-7-20-17(3)23-13-24-19(5)22(9-10-31(39)40)28(37-24)16-30-34(12-11-32(41)43-34)33(6,42)29(38-30)15-27-21(8-2)18(4)25(36-27)14-26(20)35-23;/h13-16,42H,7-12H2,1-6H3,(H,39,40);/q-4;+4/b23-13-,26-14-,29-15-,30-16-;/t33-,34-;/m0./s1" A1JN4 InChIKey InChI 1.06 FGTYSKQEPKRAII-JHWOAODTSA-N A1JN4 SMILES_CANONICAL CACTVS 3.385 "CCC1=C(C)C2=Cc3n4c(C=C5[N@]6C(=Cc7n8c(C=C1[N@]2[Fe@]468)c(C)c7CC)[C@](C)(O)[C@]59CCC(=O)O9)c(CCC(O)=O)c3C" A1JN4 SMILES CACTVS 3.385 "CCC1=C(C)C2=Cc3n4c(C=C5[N]6C(=Cc7n8c(C=C1[N]2[Fe]468)c(C)c7CC)[C](C)(O)[C]59CCC(=O)O9)c(CCC(O)=O)c3C" A1JN4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c(c2n3c1C=C4[C@]([C@]5(CCC(=O)O5)C6=Cc7c(c(c8n7[Fe]3(N46)N9C(=C8)C(=C(C9=C2)CC)C)C)CCC(=O)O)(C)O)C" A1JN4 SMILES "OpenEye OEToolkits" 2.0.7 "CCc1c(c2n3c1C=C4C(C5(CCC(=O)O5)C6=Cc7c(c(c8n7[Fe]3(N46)N9C(=C8)C(=C(C9=C2)CC)C)C)CCC(=O)O)(C)O)C" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JN4 "Create component" 2025-08-28 PDBE A1JN4 "Initial release" 2026-04-22 RCSB #