data_A1JNF # _chem_comp.id A1JNF _chem_comp.name "N-[(2S)-1-[[(2S)-1-[2-[(3-chlorophenyl)methyl]-2-ethanoyl-hydrazinyl]-1-oxidanylidene-3-phenyl-propan-2-yl]amino]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]thiophene-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H33 Cl N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-19 _chem_comp.pdbx_modified_date 2026-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 569.115 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JNF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SDM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JNF N3 N1 N 0 1 N N N N N N -22.614 2.738 25.805 -2.946 1.965 0.732 N3 A1JNF 1 A1JNF C5 C1 C 0 1 N N N N N N -21.642 2.484 23.697 -4.759 1.195 2.068 C5 A1JNF 2 A1JNF C6 C2 C 0 1 N N N N N N -20.334 2.262 24.456 -3.807 1.008 3.222 C6 A1JNF 3 A1JNF C15 C3 C 0 1 Y N N N N N -25.090 3.547 24.361 -5.389 0.534 -0.971 C15 A1JNF 4 A1JNF C17 C4 C 0 1 Y N N N N N -26.669 4.349 25.968 -6.529 -1.549 -1.278 C17 A1JNF 5 A1JNF C20 C5 C 0 1 Y N N N N N -26.363 5.539 23.948 -4.695 -0.966 -2.704 C20 A1JNF 6 A1JNF C21 C6 C 0 1 Y N N N N N -25.411 4.612 23.550 -4.546 0.228 -2.023 C21 A1JNF 7 A1JNF C22 C7 C 0 1 N N S N N N -21.988 3.725 27.929 -0.580 1.304 0.445 C22 A1JNF 8 A1JNF C24 C8 C 0 1 Y N N N N N -22.939 2.902 30.149 1.057 2.579 -0.913 C24 A1JNF 9 A1JNF C26 C9 C 0 1 Y N N N N N -21.987 1.564 31.916 3.294 2.188 -1.671 C26 A1JNF 10 A1JNF C28 C10 C 0 1 Y N N N N N -22.836 3.736 32.412 2.779 4.172 -0.434 C28 A1JNF 11 A1JNF C14 C11 C 0 1 N N N N N N -24.125 2.483 23.882 -5.229 1.839 -0.234 C14 A1JNF 12 A1JNF C16 C12 C 0 1 Y N N N N N -25.725 3.407 25.599 -6.380 -0.353 -0.597 C16 A1JNF 13 A1JNF C19 C13 C 0 1 Y N N N N N -27.002 5.411 25.173 -5.686 -1.855 -2.331 C19 A1JNF 14 A1JNF C2 C14 C 0 1 N N N N N N -22.233 3.865 26.427 -2.041 0.974 0.606 C2 A1JNF 15 A1JNF C23 C15 C 0 1 N N N N N N -23.199 3.140 28.685 -0.383 2.146 -0.817 C23 A1JNF 16 A1JNF C25 C16 C 0 1 Y N N N N N -22.338 1.733 30.587 1.974 1.787 -1.578 C25 A1JNF 17 A1JNF C27 C17 C 0 1 Y N N N N N -22.239 2.571 32.829 3.696 3.381 -1.099 C27 A1JNF 18 A1JNF C29 C18 C 0 1 Y N N N N N -23.186 3.899 31.081 1.459 3.772 -0.341 C29 A1JNF 19 A1JNF C31 C19 C 0 1 N N N N N N -20.421 5.189 29.080 1.494 0.045 0.676 C31 A1JNF 20 A1JNF C32 C20 C 0 1 N N S N N N -20.314 6.515 29.855 2.317 -1.196 0.447 C32 A1JNF 21 A1JNF C34 C21 C 0 1 N N N N N N -20.299 6.521 32.310 4.564 -1.628 -0.389 C34 A1JNF 22 A1JNF C35 C22 C 0 1 Y N N N N N -19.656 6.031 33.540 5.975 -1.259 -0.538 C35 A1JNF 23 A1JNF C36 C23 C 0 1 Y N N N N N -18.644 5.177 33.749 6.918 -1.985 -1.209 C36 A1JNF 24 A1JNF C37 C24 C 0 1 Y N N N N N -18.337 4.978 35.149 8.164 -1.406 -1.192 C37 A1JNF 25 A1JNF C38 C25 C 0 1 Y N N N N N -19.151 5.705 35.932 8.241 -0.245 -0.531 C38 A1JNF 26 A1JNF C41 C26 C 0 1 N N N N N N -19.679 7.704 29.089 2.160 -2.139 1.642 C41 A1JNF 27 A1JNF C42 C27 C 0 1 N N N N N N -19.702 8.959 29.961 0.676 -2.433 1.868 C42 A1JNF 28 A1JNF C43 C28 C 0 1 N N N N N N -18.235 7.385 28.701 2.902 -3.447 1.360 C43 A1JNF 29 A1JNF C44 C29 C 0 1 N N N N N N -20.484 7.962 27.818 2.746 -1.480 2.892 C44 A1JNF 30 A1JNF N30 N2 N 0 1 N N N N N N -21.612 4.980 28.542 0.191 0.064 0.330 N30 A1JNF 31 A1JNF N33 N3 N 0 1 N N N N N N -19.693 6.204 31.133 3.727 -0.827 0.298 N33 A1JNF 32 A1JNF N4 N4 N 0 1 N N N N N N -22.785 2.620 24.428 -4.304 1.658 0.887 N4 A1JNF 33 A1JNF O1 O1 O 0 1 N N N N N N -22.025 4.918 25.828 -2.403 -0.184 0.623 O1 A1JNF 34 A1JNF O13 O2 O 0 1 N N N N N N -21.650 2.414 22.492 -5.935 0.929 2.203 O13 A1JNF 35 A1JNF O40 O3 O 0 1 N N N N N N -21.344 7.161 32.375 4.149 -2.659 -0.886 O40 A1JNF 36 A1JNF O45 O4 O 0 1 N N N N N N -19.474 4.410 28.972 2.003 1.028 1.172 O45 A1JNF 37 A1JNF S39 S1 S 0 1 Y N N N N N -20.257 6.603 35.045 6.723 0.194 0.111 S39 A1JNF 38 A1JNF CL18 CL1 CL 0 0 N N N N N N -27.443 4.179 27.530 -7.774 -2.665 -0.809 CL18 A1JNF 39 A1JNF H3 H1 H 0 1 N N N N N N -22.786 1.930 26.368 -2.657 2.891 0.718 H3 A1JNF 40 A1JNF H6B H2 H 0 1 N N N N N N -19.525 2.054 23.740 -2.803 1.297 2.914 H6B A1JNF 41 A1JNF H1 H3 H 0 1 N N N N N N -20.088 3.165 25.035 -4.124 1.630 4.059 H1 A1JNF 42 A1JNF H6A H4 H 0 1 N N N N N N -20.447 1.408 25.139 -3.807 -0.038 3.527 H6A A1JNF 43 A1JNF H20 H5 H 0 1 N N N N N N -26.609 6.367 23.299 -4.037 -1.205 -3.526 H20 A1JNF 44 A1JNF H21 H6 H 0 1 N N N N N N -24.918 4.727 22.596 -3.772 0.922 -2.315 H21 A1JNF 45 A1JNF H22 H7 H 0 1 N N N N N N -21.156 3.017 28.058 -0.236 1.866 1.314 H22 A1JNF 46 A1JNF H26 H8 H 0 1 N N N N N N -21.517 0.647 32.239 4.011 1.569 -2.191 H26 A1JNF 47 A1JNF H28 H9 H 0 1 N N N N N N -23.033 4.526 33.122 3.093 5.104 0.012 H28 A1JNF 48 A1JNF H14A H10 H 0 0 N N N N N N -24.520 1.499 24.175 -4.833 2.594 -0.913 H14A A1JNF 49 A1JNF H14B H11 H 0 0 N N N N N N -24.061 2.541 22.785 -6.199 2.164 0.144 H14B A1JNF 50 A1JNF H16 H12 H 0 1 N N N N N N -25.484 2.582 26.253 -7.037 -0.114 0.225 H16 A1JNF 51 A1JNF H19 H13 H 0 1 N N N N N N -27.742 6.131 25.490 -5.802 -2.788 -2.862 H19 A1JNF 52 A1JNF H23A H14 H 0 0 N N N N N N -24.040 3.843 28.591 -0.643 1.553 -1.694 H23A A1JNF 53 A1JNF H23B H15 H 0 0 N N N N N N -23.469 2.181 28.219 -1.025 3.026 -0.771 H23B A1JNF 54 A1JNF H25 H16 H 0 1 N N N N N N -22.140 0.941 29.880 1.660 0.856 -2.024 H25 A1JNF 55 A1JNF H27 H17 H 0 1 N N N N N N -21.968 2.442 33.866 4.727 3.694 -1.173 H27 A1JNF 56 A1JNF H29 H18 H 0 1 N N N N N N -23.659 4.817 30.764 0.743 4.391 0.178 H29 A1JNF 57 A1JNF H32 H19 H 0 1 N N N N N N -21.349 6.819 30.071 1.975 -1.697 -0.458 H32 A1JNF 58 A1JNF H36 H20 H 0 1 N N N N N N -18.110 4.685 32.950 6.705 -2.922 -1.703 H36 A1JNF 59 A1JNF H37 H21 H 0 1 N N N N N N -17.555 4.330 35.516 9.019 -1.855 -1.677 H37 A1JNF 60 A1JNF H38 H22 H 0 1 N N N N N N -19.100 5.711 37.011 9.144 0.339 -0.423 H38 A1JNF 61 A1JNF H42A H23 H 0 0 N N N N N N -19.123 8.779 30.879 0.277 -2.974 1.010 H42A A1JNF 62 A1JNF H42B H24 H 0 0 N N N N N N -19.258 9.799 29.406 0.558 -3.040 2.766 H42B A1JNF 63 A1JNF H42C H25 H 0 0 N N N N N N -20.742 9.203 30.225 0.134 -1.495 1.990 H42C A1JNF 64 A1JNF H43C H26 H 0 0 N N N N N N -17.644 7.197 29.609 3.959 -3.238 1.199 H43C A1JNF 65 A1JNF H43A H27 H 0 0 N N N N N N -18.217 6.491 28.060 2.790 -4.119 2.211 H43A A1JNF 66 A1JNF H43B H28 H 0 0 N N N N N N -17.806 8.237 28.154 2.484 -3.917 0.470 H43B A1JNF 67 A1JNF H44A H29 H 0 0 N N N N N N -21.526 8.193 28.084 2.217 -0.548 3.093 H44A A1JNF 68 A1JNF H44B H30 H 0 0 N N N N N N -20.047 8.813 27.274 2.634 -2.151 3.743 H44B A1JNF 69 A1JNF H44C H31 H 0 0 N N N N N N -20.458 7.066 27.180 3.803 -1.270 2.731 H44C A1JNF 70 A1JNF H30 H32 H 0 1 N N N N N N -22.282 5.723 28.560 -0.235 -0.744 0.004 H30 A1JNF 71 A1JNF H33 H33 H 0 1 N N N N N N -18.803 5.748 31.147 4.057 -0.005 0.695 H33 A1JNF 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JNF O13 C5 DOUB N N 1 A1JNF C21 C20 DOUB Y N 2 A1JNF C21 C15 SING Y N 3 A1JNF C5 N4 SING N N 4 A1JNF C5 C6 SING N N 5 A1JNF C14 C15 SING N N 6 A1JNF C14 N4 SING N N 7 A1JNF C20 C19 SING Y N 8 A1JNF C15 C16 DOUB Y N 9 A1JNF N4 N3 SING N N 10 A1JNF C19 C17 DOUB Y N 11 A1JNF C16 C17 SING Y N 12 A1JNF N3 C2 SING N N 13 A1JNF O1 C2 DOUB N N 14 A1JNF C17 CL18 SING N N 15 A1JNF C2 C22 SING N N 16 A1JNF C44 C41 SING N N 17 A1JNF C22 N30 SING N N 18 A1JNF C22 C23 SING N N 19 A1JNF N30 C31 SING N N 20 A1JNF C23 C24 SING N N 21 A1JNF C43 C41 SING N N 22 A1JNF O45 C31 DOUB N N 23 A1JNF C31 C32 SING N N 24 A1JNF C41 C32 SING N N 25 A1JNF C41 C42 SING N N 26 A1JNF C32 N33 SING N N 27 A1JNF C24 C25 DOUB Y N 28 A1JNF C24 C29 SING Y N 29 A1JNF C25 C26 SING Y N 30 A1JNF C29 C28 DOUB Y N 31 A1JNF N33 C34 SING N N 32 A1JNF C26 C27 DOUB Y N 33 A1JNF C34 O40 DOUB N N 34 A1JNF C34 C35 SING N N 35 A1JNF C28 C27 SING Y N 36 A1JNF C35 C36 DOUB Y N 37 A1JNF C35 S39 SING Y N 38 A1JNF C36 C37 SING Y N 39 A1JNF S39 C38 SING Y N 40 A1JNF C37 C38 DOUB Y N 41 A1JNF N3 H3 SING N N 42 A1JNF C6 H6B SING N N 43 A1JNF C6 H1 SING N N 44 A1JNF C6 H6A SING N N 45 A1JNF C20 H20 SING N N 46 A1JNF C21 H21 SING N N 47 A1JNF C22 H22 SING N N 48 A1JNF C26 H26 SING N N 49 A1JNF C28 H28 SING N N 50 A1JNF C14 H14A SING N N 51 A1JNF C14 H14B SING N N 52 A1JNF C16 H16 SING N N 53 A1JNF C19 H19 SING N N 54 A1JNF C23 H23A SING N N 55 A1JNF C23 H23B SING N N 56 A1JNF C25 H25 SING N N 57 A1JNF C27 H27 SING N N 58 A1JNF C29 H29 SING N N 59 A1JNF C32 H32 SING N N 60 A1JNF C36 H36 SING N N 61 A1JNF C37 H37 SING N N 62 A1JNF C38 H38 SING N N 63 A1JNF C42 H42A SING N N 64 A1JNF C42 H42B SING N N 65 A1JNF C42 H42C SING N N 66 A1JNF C43 H43C SING N N 67 A1JNF C43 H43A SING N N 68 A1JNF C43 H43B SING N N 69 A1JNF C44 H44A SING N N 70 A1JNF C44 H44B SING N N 71 A1JNF C44 H44C SING N N 72 A1JNF N30 H30 SING N N 73 A1JNF N33 H33 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JNF InChI InChI 1.06 "InChI=1S/C29H33ClN4O4S/c1-19(35)34(18-21-12-8-13-22(30)16-21)33-26(36)23(17-20-10-6-5-7-11-20)31-28(38)25(29(2,3)4)32-27(37)24-14-9-15-39-24/h5-16,23,25H,17-18H2,1-4H3,(H,31,38)(H,32,37)(H,33,36)/t23-,25+/m0/s1" A1JNF InChIKey InChI 1.06 KIRKUISXIIXMJH-UKILVPOCSA-N A1JNF SMILES_CANONICAL CACTVS 3.385 "CC(=O)N(Cc1cccc(Cl)c1)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H](NC(=O)c3sccc3)C(C)(C)C" A1JNF SMILES CACTVS 3.385 "CC(=O)N(Cc1cccc(Cl)c1)NC(=O)[CH](Cc2ccccc2)NC(=O)[CH](NC(=O)c3sccc3)C(C)(C)C" A1JNF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N(Cc1cccc(c1)Cl)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](C(C)(C)C)NC(=O)c3cccs3" A1JNF SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N(Cc1cccc(c1)Cl)NC(=O)C(Cc2ccccc2)NC(=O)C(C(C)(C)C)NC(=O)c3cccs3" # _pdbx_chem_comp_identifier.comp_id A1JNF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{S})-1-[[(2~{S})-1-[2-[(3-chlorophenyl)methyl]-2-ethanoyl-hydrazinyl]-1-oxidanylidene-3-phenyl-propan-2-yl]amino]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]thiophene-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JNF "Create component" 2025-08-19 PDBE A1JNF "Modify PCM" 2025-08-26 PDBE A1JNF "Initial release" 2026-01-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1JNF _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C6 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #