data_A1JOD # _chem_comp.id A1JOD _chem_comp.name "5-(4-fluorophenyl)-~{N}2-piperidin-4-yl-6-pyridin-4-yl-pyrazine-2,3-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H21 F N6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-29 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.419 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JOD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SIZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JOD C10 C1 C 0 1 N N N N N N 1.587 7.014 19.729 5.224 0.738 0.881 C10 A1JOD 1 A1JOD C13 C2 C 0 1 N N N N N N -1.194 7.348 20.458 5.120 -1.489 -0.968 C13 A1JOD 2 A1JOD C11 C3 C 0 1 N N N N N N 0.568 7.698 18.813 6.147 -0.478 0.981 C11 A1JOD 3 A1JOD C17 C4 C 0 1 Y N N N N N 1.788 2.227 16.298 -0.857 -3.701 -0.393 C17 A1JOD 4 A1JOD C16 C5 C 0 1 Y N N N N N 2.236 2.951 17.398 -0.272 -2.458 -0.519 C16 A1JOD 5 A1JOD C15 C6 C 0 1 Y N N N N N 2.985 2.306 18.369 -0.800 -1.383 0.204 C15 A1JOD 6 A1JOD C14 C7 C 0 1 N N N N N N -0.187 6.734 21.421 4.167 -0.303 -1.125 C14 A1JOD 7 A1JOD C24 C8 C 0 1 Y N N N N N 7.912 0.301 19.255 -5.254 0.613 -0.207 C24 A1JOD 8 A1JOD C23 C9 C 0 1 Y N N N N N 7.435 0.199 20.549 -4.436 -0.229 -0.944 C23 A1JOD 9 A1JOD C22 C10 C 0 1 Y N N N N N 6.325 0.932 20.938 -3.065 -0.078 -0.896 C22 A1JOD 10 A1JOD C27 C11 C 0 1 Y N N N N N 6.226 1.909 18.746 -3.331 1.768 0.636 C27 A1JOD 11 A1JOD C20 C12 C 0 1 Y N N N N N 3.166 0.927 18.253 -1.905 -1.621 1.028 C20 A1JOD 12 A1JOD C19 C13 C 0 1 Y N N N N N 2.696 0.263 17.133 -2.427 -2.896 1.095 C19 A1JOD 13 A1JOD N18 N1 N 0 1 Y N N N N N 2.028 0.929 16.208 -1.901 -3.882 0.392 N18 A1JOD 14 A1JOD C02 C14 C 0 1 Y N N N N N 3.894 4.248 21.984 0.818 2.453 -0.093 C02 A1JOD 15 A1JOD C04 C15 C 0 1 Y N N N N N 4.555 2.672 20.413 -1.033 1.090 -0.049 C04 A1JOD 16 A1JOD C05 C16 C 0 1 Y N N N N N 3.443 2.999 19.637 -0.205 -0.031 0.100 C05 A1JOD 17 A1JOD C07 C17 C 0 1 Y N N N N N 2.784 4.523 21.209 1.648 1.329 0.052 C07 A1JOD 18 A1JOD C09 C18 C 0 1 N N N N N N 0.904 6.071 20.662 3.895 0.314 0.250 C09 A1JOD 19 A1JOD C21 C19 C 0 1 Y N N N N N 5.702 1.752 20.025 -2.504 0.923 -0.104 C21 A1JOD 20 A1JOD C26 C20 C 0 1 Y N N N N N 7.315 1.147 18.346 -4.700 1.609 0.581 C26 A1JOD 21 A1JOD F25 F1 F 0 1 N N N N N N 8.989 -0.450 18.871 -6.595 0.464 -0.261 F25 A1JOD 22 A1JOD N01 N2 N 0 1 N N N N N N 4.093 4.959 23.236 1.378 3.721 -0.191 N01 A1JOD 23 A1JOD N03 N3 N 0 1 Y N N N N N 4.755 3.330 21.555 -0.496 2.305 -0.142 N03 A1JOD 24 A1JOD N06 N4 N 0 1 Y N N N N N 2.584 3.896 20.068 1.117 0.121 0.144 N06 A1JOD 25 A1JOD N08 N5 N 0 1 N N N N N N 1.830 5.514 21.630 3.029 1.486 0.098 N08 A1JOD 26 A1JOD N12 N6 N 0 1 N N N N N N -0.540 8.344 19.573 6.377 -1.031 -0.360 N12 A1JOD 27 A1JOD H1 H1 H 0 1 N N N N N N 2.308 6.455 19.114 5.042 1.139 1.878 H1 A1JOD 28 A1JOD H2 H2 H 0 1 N N N N N N 2.119 7.779 20.313 5.694 1.503 0.262 H2 A1JOD 29 A1JOD H3 H3 H 0 1 N N N N N N -1.988 7.845 21.035 4.661 -2.242 -0.328 H3 A1JOD 30 A1JOD H4 H4 H 0 1 N N N N N N -1.634 6.551 19.840 5.327 -1.921 -1.947 H4 A1JOD 31 A1JOD H5 H5 H 0 1 N N N N N N 0.139 6.944 18.137 7.100 -0.177 1.417 H5 A1JOD 32 A1JOD H6 H6 H 0 1 N N N N N N 1.086 8.468 18.222 5.683 -1.236 1.612 H6 A1JOD 33 A1JOD H7 H7 H 0 1 N N N N N N 1.241 2.727 15.513 -0.456 -4.537 -0.947 H7 A1JOD 34 A1JOD H8 H8 H 0 1 N N N N N N 2.003 4.001 17.494 0.581 -2.317 -1.166 H8 A1JOD 35 A1JOD H9 H9 H 0 1 N N N N N N 0.239 7.525 22.055 4.620 0.445 -1.777 H9 A1JOD 36 A1JOD H10 H10 H 0 1 N N N N N N -0.694 5.991 22.053 3.229 -0.645 -1.563 H10 A1JOD 37 A1JOD H11 H11 H 0 1 N N N N N N 7.927 -0.452 21.256 -4.871 -1.004 -1.557 H11 A1JOD 38 A1JOD H12 H12 H 0 1 N N N N N N 5.952 0.860 21.949 -2.428 -0.734 -1.470 H12 A1JOD 39 A1JOD H13 H13 H 0 1 N N N N N N 5.786 2.623 18.065 -2.901 2.544 1.251 H13 A1JOD 40 A1JOD H14 H14 H 0 1 N N N N N N 3.671 0.379 19.035 -2.342 -0.819 1.603 H14 A1JOD 41 A1JOD H15 H15 H 0 1 N N N N N N 2.875 -0.796 17.016 -3.280 -3.090 1.729 H15 A1JOD 42 A1JOD H16 H16 H 0 1 N N N N N N 0.470 5.251 20.071 3.407 -0.421 0.889 H16 A1JOD 43 A1JOD H17 H17 H 0 1 N N N N N N 7.690 1.216 17.335 -5.342 2.262 1.154 H17 A1JOD 44 A1JOD H18 H18 H 0 1 N N N N N N 4.937 4.642 23.669 2.342 3.829 -0.159 H18 A1JOD 45 A1JOD H19 H19 H 0 1 N N N N N N 4.159 5.940 23.055 0.806 4.497 -0.291 H19 A1JOD 46 A1JOD H20 H20 H 0 1 N N N N N N 2.352 6.279 22.006 3.419 2.372 0.030 H20 A1JOD 47 A1JOD H21 H21 H 0 1 N N N N N N -0.171 9.089 20.128 6.842 -0.361 -0.953 H21 A1JOD 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JOD N18 C17 DOUB Y N 1 A1JOD N18 C19 SING Y N 2 A1JOD C17 C16 SING Y N 3 A1JOD C19 C20 DOUB Y N 4 A1JOD C16 C15 DOUB Y N 5 A1JOD C20 C15 SING Y N 6 A1JOD C26 C27 DOUB Y N 7 A1JOD C26 C24 SING Y N 8 A1JOD C15 C05 SING N N 9 A1JOD C27 C21 SING Y N 10 A1JOD C11 N12 SING N N 11 A1JOD C11 C10 SING N N 12 A1JOD F25 C24 SING N N 13 A1JOD C24 C23 DOUB Y N 14 A1JOD N12 C13 SING N N 15 A1JOD C05 N06 DOUB Y N 16 A1JOD C05 C04 SING Y N 17 A1JOD C10 C09 SING N N 18 A1JOD C21 C04 SING N N 19 A1JOD C21 C22 DOUB Y N 20 A1JOD N06 C07 SING Y N 21 A1JOD C04 N03 DOUB Y N 22 A1JOD C13 C14 SING N N 23 A1JOD C23 C22 SING Y N 24 A1JOD C09 C14 SING N N 25 A1JOD C09 N08 SING N N 26 A1JOD C07 N08 SING N N 27 A1JOD C07 C02 DOUB Y N 28 A1JOD N03 C02 SING Y N 29 A1JOD C02 N01 SING N N 30 A1JOD C10 H1 SING N N 31 A1JOD C10 H2 SING N N 32 A1JOD C13 H3 SING N N 33 A1JOD C13 H4 SING N N 34 A1JOD C11 H5 SING N N 35 A1JOD C11 H6 SING N N 36 A1JOD C17 H7 SING N N 37 A1JOD C16 H8 SING N N 38 A1JOD C14 H9 SING N N 39 A1JOD C14 H10 SING N N 40 A1JOD C23 H11 SING N N 41 A1JOD C22 H12 SING N N 42 A1JOD C27 H13 SING N N 43 A1JOD C20 H14 SING N N 44 A1JOD C19 H15 SING N N 45 A1JOD C09 H16 SING N N 46 A1JOD C26 H17 SING N N 47 A1JOD N01 H18 SING N N 48 A1JOD N01 H19 SING N N 49 A1JOD N08 H20 SING N N 50 A1JOD N12 H21 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JOD InChI InChI 1.06 "InChI=1S/C20H21FN6/c21-15-3-1-13(2-4-15)17-18(14-5-9-23-10-6-14)27-20(19(22)26-17)25-16-7-11-24-12-8-16/h1-6,9-10,16,24H,7-8,11-12H2,(H2,22,26)(H,25,27)" A1JOD InChIKey InChI 1.06 VAMQAOQVFCTTFI-UHFFFAOYSA-N A1JOD SMILES_CANONICAL CACTVS 3.385 "Nc1nc(c2ccc(F)cc2)c(nc1NC3CCNCC3)c4ccncc4" A1JOD SMILES CACTVS 3.385 "Nc1nc(c2ccc(F)cc2)c(nc1NC3CCNCC3)c4ccncc4" A1JOD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2c(nc(c(n2)N)NC3CCNCC3)c4ccncc4)F" A1JOD SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2c(nc(c(n2)N)NC3CCNCC3)c4ccncc4)F" # _pdbx_chem_comp_identifier.comp_id A1JOD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-(4-fluorophenyl)-~{N}2-piperidin-4-yl-6-pyridin-4-yl-pyrazine-2,3-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JOD "Create component" 2025-08-29 PDBE A1JOD "Initial release" 2026-09-09 RCSB #