data_A1JOH # _chem_comp.id A1JOH _chem_comp.name "naphthalen-2-yl ~{N}-methyl-~{N}-[(2~{S},3~{R})-2-(pyridin-3-ylmethyl)-1-azabicyclo[2.2.2]octan-3-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-03 _chem_comp.pdbx_modified_date 2025-11-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 401.501 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JOH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SL8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JOH C01 C1 C 0 1 N N N N N N 22.778 40.166 39.388 0.655 -0.774 2.028 C01 A1JOH 1 A1JOH C03 C2 C 0 1 N N R N N N 22.155 40.443 41.829 1.336 -1.025 -0.403 C03 A1JOH 2 A1JOH C04 C3 C 0 1 N N N N N N 22.572 41.771 42.466 1.670 -2.515 -0.556 C04 A1JOH 3 A1JOH C05 C4 C 0 1 N N N N N N 22.671 41.602 43.997 2.785 -2.662 -1.599 C05 A1JOH 4 A1JOH C06 C5 C 0 1 N N N N N N 23.497 40.356 44.425 4.009 -1.869 -1.131 C06 A1JOH 5 A1JOH C07 C6 C 0 1 N N N N N N 24.019 42.078 42.183 2.168 -3.045 0.795 C07 A1JOH 6 A1JOH C08 C7 C 0 1 N N N N N N 25.021 41.035 42.810 3.404 -2.244 1.216 C08 A1JOH 7 A1JOH C10 C8 C 0 1 N N S N N N 23.346 39.432 42.170 2.600 -0.277 0.032 C10 A1JOH 8 A1JOH C11 C9 C 0 1 N N N N N N 22.815 38.017 42.521 2.952 0.781 -1.016 C11 A1JOH 9 A1JOH C12 C10 C 0 1 Y N N N N N 22.185 37.351 41.329 4.122 1.598 -0.530 C12 A1JOH 10 A1JOH C13 C11 C 0 1 Y N N N N N 20.799 37.346 41.154 3.914 2.740 0.221 C13 A1JOH 11 A1JOH C15 C12 C 0 1 Y N N N N N 20.866 36.200 39.099 6.179 3.125 0.383 C15 A1JOH 12 A1JOH C16 C13 C 0 1 Y N N N N N 22.261 36.134 39.157 6.464 1.993 -0.358 C16 A1JOH 13 A1JOH C17 C14 C 0 1 Y N N N N N 22.909 36.715 40.270 5.420 1.211 -0.826 C17 A1JOH 14 A1JOH C18 C15 C 0 1 N N N N N N 20.460 40.534 40.134 -1.001 -0.780 0.240 C18 A1JOH 15 A1JOH C20 C16 C 0 1 Y N N N N N 18.222 40.572 41.315 -3.221 -0.355 0.706 C20 A1JOH 16 A1JOH C21 C17 C 0 1 Y N N N N N 17.405 39.574 41.834 -3.745 0.903 0.621 C21 A1JOH 17 A1JOH C22 C18 C 0 1 Y N N N N N 15.968 39.680 41.948 -5.057 1.078 0.151 C22 A1JOH 18 A1JOH C23 C19 C 0 1 Y N N N N N 15.068 38.660 42.487 -5.631 2.357 0.049 C23 A1JOH 19 A1JOH C24 C20 C 0 1 Y N N N N N 13.708 38.822 42.581 -6.905 2.489 -0.411 C24 A1JOH 20 A1JOH C26 C21 C 0 1 Y N N N N N 13.905 41.027 41.602 -7.130 0.119 -0.699 C26 A1JOH 21 A1JOH C27 C22 C 0 1 Y N N N N N 15.331 40.909 41.497 -5.818 -0.057 -0.228 C27 A1JOH 22 A1JOH C28 C23 C 0 1 Y N N N N N 16.190 41.928 40.968 -5.245 -1.337 -0.128 C28 A1JOH 23 A1JOH C29 C24 C 0 1 Y N N N N N 17.571 41.793 40.866 -3.971 -1.472 0.326 C29 A1JOH 24 A1JOH N09 N1 N 0 1 N N N N N N 24.226 39.840 43.231 3.711 -1.230 0.159 N09 A1JOH 25 A1JOH C25 C25 C 0 1 Y N N N N N 13.099 40.019 42.130 -7.653 1.373 -0.784 C25 A1JOH 26 A1JOH N02 N2 N 0 1 N N N N N N 21.833 40.686 40.379 0.292 -0.858 0.611 N02 A1JOH 27 A1JOH N14 N3 N 0 1 Y N N N N N 20.147 36.808 40.095 4.932 3.460 0.649 N14 A1JOH 28 A1JOH O19 O1 O 0 1 N N N N N N 19.620 40.413 41.245 -1.951 -0.522 1.160 O19 A1JOH 29 A1JOH O30 O2 O 0 1 N N N N N N 20.000 40.468 39.010 -1.311 -0.942 -0.923 O30 A1JOH 30 A1JOH H011 H1 H 0 0 N N N N N N 22.422 40.413 38.377 0.720 0.272 2.325 H011 A1JOH 31 A1JOH H012 H2 H 0 0 N N N N N N 23.766 40.621 39.550 -0.105 -1.276 2.627 H012 A1JOH 32 A1JOH H013 H3 H 0 0 N N N N N N 22.855 39.074 39.493 1.619 -1.258 2.185 H013 A1JOH 33 A1JOH H031 H4 H 0 0 N N N N N N 21.250 40.079 42.338 0.986 -0.628 -1.357 H031 A1JOH 34 A1JOH H041 H5 H 0 0 N N N N N N 21.902 42.596 42.184 0.785 -3.067 -0.872 H041 A1JOH 35 A1JOH H051 H6 H 0 0 N N N N N N 21.654 41.504 44.404 3.050 -3.714 -1.704 H051 A1JOH 36 A1JOH H052 H7 H 0 0 N N N N N N 23.149 42.499 44.417 2.441 -2.274 -2.558 H052 A1JOH 37 A1JOH H061 H8 H 0 0 N N N N N N 24.218 40.639 45.206 4.857 -2.544 -1.015 H061 A1JOH 38 A1JOH H062 H9 H 0 0 N N N N N N 22.822 39.579 44.813 4.250 -1.104 -1.868 H062 A1JOH 39 A1JOH H071 H10 H 0 0 N N N N N N 24.165 42.088 41.093 1.385 -2.928 1.544 H071 A1JOH 40 A1JOH H072 H11 H 0 0 N N N N N N 24.250 43.072 42.593 2.428 -4.099 0.700 H072 A1JOH 41 A1JOH H081 H12 H 0 0 N N N N N N 25.773 40.741 42.063 3.210 -1.750 2.167 H081 A1JOH 42 A1JOH H082 H13 H 0 0 N N N N N N 25.525 41.477 43.682 4.254 -2.918 1.322 H082 A1JOH 43 A1JOH H101 H14 H 0 0 N N N N N N 23.940 39.331 41.250 2.423 0.206 0.992 H101 A1JOH 44 A1JOH H111 H15 H 0 0 N N N N N N 23.653 37.398 42.874 3.216 0.291 -1.953 H111 A1JOH 45 A1JOH H112 H16 H 0 0 N N N N N N 22.063 38.106 43.319 2.094 1.434 -1.176 H112 A1JOH 46 A1JOH H131 H17 H 0 0 N N N N N N 20.199 37.808 41.924 2.906 3.046 0.459 H131 A1JOH 47 A1JOH H151 H18 H 0 0 N N N N N N 20.347 35.766 38.257 6.987 3.739 0.751 H151 A1JOH 48 A1JOH H161 H19 H 0 0 N N N N N N 22.827 35.653 38.373 7.488 1.724 -0.573 H161 A1JOH 49 A1JOH H171 H20 H 0 0 N N N N N N 23.987 36.678 40.324 5.613 0.321 -1.407 H171 A1JOH 50 A1JOH H211 H21 H 0 0 N N N N N N 17.874 38.662 42.173 -3.155 1.759 0.913 H211 A1JOH 51 A1JOH H231 H22 H 0 0 N N N N N N 15.497 37.730 42.829 -5.064 3.231 0.335 H231 A1JOH 52 A1JOH H241 H23 H 0 0 N N N N N N 13.100 38.034 43.000 -7.344 3.473 -0.488 H241 A1JOH 53 A1JOH H261 H24 H 0 0 N N N N N N 13.435 41.936 41.257 -7.721 -0.736 -0.992 H261 A1JOH 54 A1JOH H281 H25 H 0 0 N N N N N N 15.741 42.850 40.630 -5.815 -2.210 -0.413 H281 A1JOH 55 A1JOH H291 H26 H 0 0 N N N N N N 18.161 42.597 40.452 -3.533 -2.457 0.398 H291 A1JOH 56 A1JOH H251 H28 H 0 0 N N N N N N 12.029 40.149 42.194 -8.662 1.505 -1.145 H251 A1JOH 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JOH N02 C01 SING N N 1 A1JOH C04 C03 SING N N 2 A1JOH C06 C05 SING N N 3 A1JOH C05 C04 SING N N 4 A1JOH C07 C04 SING N N 5 A1JOH C08 C07 SING N N 6 A1JOH N09 C08 SING N N 7 A1JOH C10 N09 SING N N 8 A1JOH C11 C10 SING N N 9 A1JOH C12 C11 SING N N 10 A1JOH C13 C12 DOUB Y N 11 A1JOH N14 C13 SING Y N 12 A1JOH C15 N14 DOUB Y N 13 A1JOH C16 C15 SING Y N 14 A1JOH C17 C16 DOUB Y N 15 A1JOH C03 N02 SING N N 16 A1JOH C18 N02 SING N N 17 A1JOH C20 O19 SING N N 18 A1JOH C21 C20 DOUB Y N 19 A1JOH C22 C21 SING Y N 20 A1JOH C24 C23 DOUB Y N 21 A1JOH C25 C24 SING Y N 22 A1JOH C26 C25 DOUB Y N 23 A1JOH C23 C22 SING Y N 24 A1JOH C27 C22 DOUB Y N 25 A1JOH C28 C27 SING Y N 26 A1JOH C29 C28 DOUB Y N 27 A1JOH O19 C18 SING N N 28 A1JOH O30 C18 DOUB N N 29 A1JOH C03 C10 SING N N 30 A1JOH C06 N09 SING N N 31 A1JOH C12 C17 SING Y N 32 A1JOH C20 C29 SING Y N 33 A1JOH C26 C27 SING Y N 34 A1JOH C01 H011 SING N N 35 A1JOH C01 H012 SING N N 36 A1JOH C01 H013 SING N N 37 A1JOH C03 H031 SING N N 38 A1JOH C04 H041 SING N N 39 A1JOH C05 H051 SING N N 40 A1JOH C05 H052 SING N N 41 A1JOH C06 H061 SING N N 42 A1JOH C06 H062 SING N N 43 A1JOH C07 H071 SING N N 44 A1JOH C07 H072 SING N N 45 A1JOH C08 H081 SING N N 46 A1JOH C08 H082 SING N N 47 A1JOH C10 H101 SING N N 48 A1JOH C11 H111 SING N N 49 A1JOH C11 H112 SING N N 50 A1JOH C13 H131 SING N N 51 A1JOH C15 H151 SING N N 52 A1JOH C16 H161 SING N N 53 A1JOH C17 H171 SING N N 54 A1JOH C21 H211 SING N N 55 A1JOH C23 H231 SING N N 56 A1JOH C24 H241 SING N N 57 A1JOH C26 H261 SING N N 58 A1JOH C28 H281 SING N N 59 A1JOH C29 H291 SING N N 60 A1JOH C25 H251 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JOH InChI InChI 1.06 "InChI=1S/C25H27N3O2/c1-27(25(29)30-22-9-8-19-6-2-3-7-21(19)16-22)24-20-10-13-28(14-11-20)23(24)15-18-5-4-12-26-17-18/h2-9,12,16-17,20,23-24H,10-11,13-15H2,1H3/t23-,24+/m0/s1" A1JOH InChIKey InChI 1.06 GICKEKKCOCQDNF-BJKOFHAPSA-N A1JOH SMILES_CANONICAL CACTVS 3.385 "CN([C@@H]1C2CCN(CC2)[C@H]1Cc3cccnc3)C(=O)Oc4ccc5ccccc5c4" A1JOH SMILES CACTVS 3.385 "CN([CH]1C2CCN(CC2)[CH]1Cc3cccnc3)C(=O)Oc4ccc5ccccc5c4" A1JOH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN([C@H]1[C@@H](N2CCC1CC2)Cc3cccnc3)C(=O)Oc4ccc5ccccc5c4" A1JOH SMILES "OpenEye OEToolkits" 2.0.7 "CN(C1C2CCN(C1Cc3cccnc3)CC2)C(=O)Oc4ccc5ccccc5c4" # _pdbx_chem_comp_identifier.comp_id A1JOH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "naphthalen-2-yl ~{N}-methyl-~{N}-[(2~{S},3~{R})-2-(pyridin-3-ylmethyl)-1-azabicyclo[2.2.2]octan-3-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JOH "Create component" 2025-09-03 PDBE A1JOH "Initial release" 2025-11-26 RCSB #