data_A1JOP # _chem_comp.id A1JOP _chem_comp.name "(4~{R})-4-[(3~{S},5~{R},6~{R},8~{S},9~{S},10~{R},13~{R},14~{S},17~{R})-6-[2-(4~{H}-imidazol-5-yl)ethylamino]-10,13-dimethyl-3,5-bis(oxidanyl)-1,2,3,4,6,7,8,9,11,12,14,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H47 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-05 _chem_comp.pdbx_modified_date 2026-09-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 501.701 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JOP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SLU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JOP C1 C1 C 0 1 N N N N N N 41.031 7.366 14.254 6.958 1.328 -0.926 C1 A1JOP 1 A1JOP C2 C2 C 0 1 N N N N N N 39.537 7.643 14.387 6.136 0.604 0.141 C2 A1JOP 2 A1JOP C3 C3 C 0 1 N N R N N N 38.908 7.363 15.772 4.786 0.190 -0.448 C3 A1JOP 3 A1JOP C4 C4 C 0 1 N N N N N N 39.761 7.981 16.880 5.008 -0.841 -1.556 C4 A1JOP 4 A1JOP C5 C5 C 0 1 N N R N N N 37.444 7.851 15.779 3.915 -0.422 0.651 C5 A1JOP 5 A1JOP C6 C6 C 0 1 N N N N N N 36.645 7.258 14.589 3.648 0.620 1.766 C6 A1JOP 6 A1JOP O1 O1 O 0 1 N N N N N N 40.869 6.394 12.056 8.550 1.474 0.804 O1 A1JOP 7 A1JOP O3 O2 O 0 1 N N N N N N 29.412 9.693 21.766 -5.544 -3.222 -0.865 O3 A1JOP 8 A1JOP C C7 C 0 1 N N N N N N 41.500 7.048 12.865 8.288 1.735 -0.346 C A1JOP 9 A1JOP O O3 O 0 1 N N N N N N 42.684 7.551 12.634 9.180 2.389 -1.106 O A1JOP 10 A1JOP C27 C8 C 0 1 N N R N N N 36.526 7.599 17.013 2.540 -0.781 0.098 C27 A1JOP 11 A1JOP C28 C9 C 0 1 N N N N N N 36.643 6.142 17.501 2.161 0.194 -1.018 C28 A1JOP 12 A1JOP C8 C10 C 0 1 N N S N N N 35.149 7.883 16.360 1.600 -0.576 1.316 C8 A1JOP 13 A1JOP C7 C11 C 0 1 N N N N N N 35.192 7.078 15.053 2.105 0.759 1.876 C7 A1JOP 14 A1JOP C26 C12 C 0 1 N N N N N N 36.659 8.563 18.214 2.355 -2.207 -0.383 C26 A1JOP 15 A1JOP C25 C13 C 0 1 N N N N N N 35.498 8.454 19.218 0.905 -2.337 -0.882 C25 A1JOP 16 A1JOP C24 C14 C 0 1 N N S N N N 34.119 8.614 18.548 -0.093 -1.975 0.212 C24 A1JOP 17 A1JOP C9 C15 C 0 1 N N S N N N 33.951 7.704 17.309 0.179 -0.576 0.785 C9 A1JOP 18 A1JOP C22 C16 C 0 1 N N R N N N 32.910 8.469 19.531 -1.518 -2.023 -0.343 C22 A1JOP 19 A1JOP C23 C17 C 0 1 N N N N N N 32.849 7.032 20.099 -1.673 -0.970 -1.443 C23 A1JOP 20 A1JOP C21 C18 C 0 1 N N N N N N 33.036 9.430 20.737 -1.792 -3.412 -0.923 C21 A1JOP 21 A1JOP C20 C19 C 0 1 N N N N N N 31.811 9.409 21.659 -3.218 -3.462 -1.476 C20 A1JOP 22 A1JOP C19 C20 C 0 1 N N S N N N 30.546 9.760 20.896 -4.212 -3.175 -0.349 C19 A1JOP 23 A1JOP C18 C21 C 0 1 N N N N N N 30.349 8.833 19.703 -3.938 -1.786 0.231 C18 A1JOP 24 A1JOP C17 C22 C 0 1 N N R N N N 31.582 8.842 18.755 -2.513 -1.735 0.783 C17 A1JOP 25 A1JOP O2 O4 O 0 1 N N N N N N 31.683 10.208 18.309 -2.364 -2.717 1.810 O2 A1JOP 26 A1JOP C11 C23 C 0 1 N N R N N N 31.392 7.968 17.480 -2.240 -0.346 1.366 C11 A1JOP 27 A1JOP C10 C24 C 0 1 N N N N N N 32.636 8.001 16.580 -0.812 -0.295 1.915 C10 A1JOP 28 A1JOP N N1 N 0 1 N N N N N N 31.010 6.572 17.717 -2.397 0.666 0.312 N A1JOP 29 A1JOP H1 H1 H 0 1 N N N N N N 41.278 6.511 14.901 7.121 0.661 -1.774 H1 A1JOP 30 A1JOP H2 H2 H 0 1 N N N N N N 41.575 8.257 14.601 6.420 2.215 -1.260 H2 A1JOP 31 A1JOP H3 H3 H 0 1 N N N N N N 39.371 8.705 14.152 6.674 -0.283 0.475 H3 A1JOP 32 A1JOP H4 H4 H 0 1 N N N N N N 39.013 7.018 13.649 5.973 1.270 0.989 H4 A1JOP 33 A1JOP H5 H5 H 0 1 N N N N N N 38.899 6.273 15.921 4.286 1.066 -0.862 H5 A1JOP 34 A1JOP H6 H6 H 0 1 N N N N N N 39.301 7.773 17.857 4.046 -1.136 -1.976 H6 A1JOP 35 A1JOP H7 H7 H 0 1 N N N N N N 40.771 7.546 16.851 5.628 -0.405 -2.339 H7 A1JOP 36 A1JOP H8 H8 H 0 1 N N N N N N 39.826 9.069 16.729 5.507 -1.717 -1.142 H8 A1JOP 37 A1JOP H9 H9 H 0 1 N N N N N N 37.473 8.940 15.627 4.399 -1.305 1.067 H9 A1JOP 38 A1JOP H10 H10 H 0 1 N N N N N N 36.683 7.946 13.731 4.060 0.269 2.713 H10 A1JOP 39 A1JOP H11 H11 H 0 1 N N N N N N 37.070 6.286 14.299 4.092 1.578 1.497 H11 A1JOP 40 A1JOP H31 H12 H 0 1 N N N N N N 29.545 10.274 22.506 -5.786 -4.076 -1.249 H31 A1JOP 41 A1JOP H H13 H 0 1 N N N N N N 42.958 7.325 11.753 10.019 2.629 -0.690 H A1JOP 42 A1JOP H44 H14 H 0 1 N N N N N N 36.548 5.459 16.644 2.884 0.117 -1.830 H44 A1JOP 43 A1JOP H45 H15 H 0 1 N N N N N N 37.622 5.994 17.981 1.167 -0.051 -1.393 H45 A1JOP 44 A1JOP H46 H16 H 0 1 N N N N N N 35.843 5.933 18.227 2.161 1.212 -0.627 H46 A1JOP 45 A1JOP H14 H17 H 0 1 N N N N N N 35.159 8.944 16.071 1.734 -1.379 2.041 H14 A1JOP 46 A1JOP H12 H18 H 0 1 N N N N N N 34.487 7.485 14.314 1.801 0.881 2.915 H12 A1JOP 47 A1JOP H13 H19 H 0 1 N N N N N N 34.962 6.017 15.233 1.749 1.591 1.268 H13 A1JOP 48 A1JOP H42 H20 H 0 1 N N N N N N 36.693 9.594 17.831 3.047 -2.417 -1.198 H42 A1JOP 49 A1JOP H43 H21 H 0 1 N N N N N N 37.598 8.336 18.741 2.529 -2.901 0.439 H43 A1JOP 50 A1JOP H40 H22 H 0 1 N N N N N N 35.614 9.241 19.978 0.760 -1.671 -1.732 H40 A1JOP 51 A1JOP H41 H23 H 0 1 N N N N N N 35.542 7.467 19.702 0.728 -3.364 -1.199 H41 A1JOP 52 A1JOP H39 H24 H 0 1 N N N N N N 34.080 9.648 18.174 -0.007 -2.698 1.023 H39 A1JOP 53 A1JOP H15 H25 H 0 1 N N N N N N 33.932 6.658 17.649 0.076 0.183 0.009 H15 A1JOP 54 A1JOP H36 H26 H 0 1 N N N N N N 32.759 6.313 19.271 -1.122 -1.287 -2.329 H36 A1JOP 55 A1JOP H37 H27 H 0 1 N N N N N N 33.767 6.823 20.667 -2.728 -0.858 -1.691 H37 A1JOP 56 A1JOP H38 H28 H 0 1 N N N N N N 31.977 6.937 20.763 -1.278 -0.017 -1.091 H38 A1JOP 57 A1JOP H34 H29 H 0 1 N N N N N N 33.169 10.453 20.356 -1.084 -3.616 -1.726 H34 A1JOP 58 A1JOP H35 H30 H 0 1 N N N N N N 33.920 9.140 21.324 -1.679 -4.161 -0.140 H35 A1JOP 59 A1JOP H32 H31 H 0 1 N N N N N N 31.957 10.140 22.468 -3.330 -2.713 -2.259 H32 A1JOP 60 A1JOP H33 H32 H 0 1 N N N N N N 31.703 8.403 22.090 -3.412 -4.452 -1.889 H33 A1JOP 61 A1JOP H30 H33 H 0 1 N N N N N N 30.651 10.787 20.515 -4.099 -3.924 0.435 H30 A1JOP 62 A1JOP H28 H34 H 0 1 N N N N N N 29.464 9.162 19.139 -4.050 -1.037 -0.553 H28 A1JOP 63 A1JOP H29 H35 H 0 1 N N N N N N 30.190 7.809 20.071 -4.647 -1.581 1.033 H29 A1JOP 64 A1JOP H27 H36 H 0 1 N N N N N N 31.800 10.779 19.059 -2.965 -2.598 2.559 H27 A1JOP 65 A1JOP H18 H37 H 0 1 N N N N N N 30.579 8.436 16.905 -2.947 -0.145 2.171 H18 A1JOP 66 A1JOP H16 H38 H 0 1 N N N N N N 32.710 9.003 16.131 -0.695 -1.047 2.696 H16 A1JOP 67 A1JOP H17 H39 H 0 1 N N N N N N 32.506 7.252 15.785 -0.619 0.694 2.331 H17 A1JOP 68 A1JOP H19 H40 H 0 1 N N N N N N 31.728 5.963 17.379 -1.598 1.280 0.279 H19 A1JOP 69 A1JOP C12 C12 C 0 1 N N N N N N ? ? ? -3.640 1.428 0.496 C12 A1JOP 70 A1JOP C13 C13 C 0 1 N N N N N N ? ? ? -3.768 2.470 -0.618 C13 A1JOP 71 A1JOP C30 C30 C 0 1 N N N N N N ? ? ? -5.042 3.252 -0.430 C30 A1JOP 72 A1JOP N1 N1 N 0 1 N N N N N N ? ? ? -5.922 3.104 0.509 N1 A1JOP 73 A1JOP C15 C15 C 0 1 N N N N N N ? ? ? -6.950 3.971 0.384 C15 A1JOP 74 A1JOP N2 N2 N 0 1 N N N N N N ? ? ? -6.830 4.752 -0.639 N2 A1JOP 75 A1JOP C29 C29 C 0 1 N N N N N N ? ? ? -5.563 4.382 -1.296 C29 A1JOP 76 A1JOP H20 H20 H 0 1 N N N N N N ? ? ? -4.492 0.749 0.458 H20 A1JOP 77 A1JOP H21 H21 H 0 1 N N N N N N ? ? ? -3.618 1.930 1.463 H21 A1JOP 78 A1JOP H22 H22 H 0 1 N N N N N N ? ? ? -2.916 3.149 -0.580 H22 A1JOP 79 A1JOP H23 H23 H 0 1 N N N N N N ? ? ? -3.789 1.967 -1.585 H23 A1JOP 80 A1JOP H24 H24 H 0 1 N N N N N N ? ? ? -7.786 4.008 1.067 H24 A1JOP 81 A1JOP H25 H25 H 0 1 N N N N N N ? ? ? -4.870 5.224 -1.297 H25 A1JOP 82 A1JOP H26 H26 H 0 1 N N N N N N ? ? ? -5.744 4.030 -2.311 H26 A1JOP 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JOP O C SING N N 1 A1JOP C O1 DOUB N N 2 A1JOP C1 C SING N N 3 A1JOP C2 C1 SING N N 4 A1JOP C3 C2 SING N N 5 A1JOP C4 C3 SING N N 6 A1JOP C5 C3 SING N N 7 A1JOP C5 C6 SING N N 8 A1JOP C6 C7 SING N N 9 A1JOP C7 C8 SING N N 10 A1JOP C8 C9 SING N N 11 A1JOP C9 C10 SING N N 12 A1JOP C10 C11 SING N N 13 A1JOP N C11 SING N N 14 A1JOP C11 C17 SING N N 15 A1JOP O2 C17 SING N N 16 A1JOP C17 C18 SING N N 17 A1JOP C18 C19 SING N N 18 A1JOP O3 C19 SING N N 19 A1JOP C19 C20 SING N N 20 A1JOP C20 C21 SING N N 21 A1JOP C21 C22 SING N N 22 A1JOP C17 C22 SING N N 23 A1JOP C23 C22 SING N N 24 A1JOP C22 C24 SING N N 25 A1JOP C9 C24 SING N N 26 A1JOP C24 C25 SING N N 27 A1JOP C25 C26 SING N N 28 A1JOP C26 C27 SING N N 29 A1JOP C27 C5 SING N N 30 A1JOP C8 C27 SING N N 31 A1JOP C28 C27 SING N N 32 A1JOP C1 H1 SING N N 33 A1JOP C1 H2 SING N N 34 A1JOP C2 H3 SING N N 35 A1JOP C2 H4 SING N N 36 A1JOP C3 H5 SING N N 37 A1JOP C4 H6 SING N N 38 A1JOP C4 H7 SING N N 39 A1JOP C4 H8 SING N N 40 A1JOP C5 H9 SING N N 41 A1JOP C6 H10 SING N N 42 A1JOP C6 H11 SING N N 43 A1JOP O3 H31 SING N N 44 A1JOP O H SING N N 45 A1JOP C28 H44 SING N N 46 A1JOP C28 H45 SING N N 47 A1JOP C28 H46 SING N N 48 A1JOP C8 H14 SING N N 49 A1JOP C7 H12 SING N N 50 A1JOP C7 H13 SING N N 51 A1JOP C26 H42 SING N N 52 A1JOP C26 H43 SING N N 53 A1JOP C25 H40 SING N N 54 A1JOP C25 H41 SING N N 55 A1JOP C24 H39 SING N N 56 A1JOP C9 H15 SING N N 57 A1JOP C23 H36 SING N N 58 A1JOP C23 H37 SING N N 59 A1JOP C23 H38 SING N N 60 A1JOP C21 H34 SING N N 61 A1JOP C21 H35 SING N N 62 A1JOP C20 H32 SING N N 63 A1JOP C20 H33 SING N N 64 A1JOP C19 H30 SING N N 65 A1JOP C18 H28 SING N N 66 A1JOP C18 H29 SING N N 67 A1JOP O2 H27 SING N N 68 A1JOP C11 H18 SING N N 69 A1JOP C10 H16 SING N N 70 A1JOP C10 H17 SING N N 71 A1JOP N H19 SING N N 72 A1JOP N C12 SING N N 73 A1JOP C12 C13 SING N N 74 A1JOP C13 C30 SING N N 75 A1JOP C30 N1 DOUB N N 76 A1JOP N1 C15 SING N N 77 A1JOP C15 N2 DOUB N N 78 A1JOP N2 C29 SING N N 79 A1JOP C29 C30 SING N N 80 A1JOP C12 H20 SING N N 81 A1JOP C12 H21 SING N N 82 A1JOP C13 H22 SING N N 83 A1JOP C13 H23 SING N N 84 A1JOP C15 H24 SING N N 85 A1JOP C29 H25 SING N N 86 A1JOP C29 H26 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JOP InChI InChI 1.06 "InChI=1S/C29H47N3O4/c1-18(4-7-26(34)35)22-5-6-23-21-14-25(31-13-10-19-16-30-17-32-19)29(36)15-20(33)8-12-28(29,3)24(21)9-11-27(22,23)2/h17-18,20-25,31,33,36H,4-16H2,1-3H3,(H,34,35)/t18-,20+,21+,22-,23+,24+,25-,27-,28-,29+/m1/s1" A1JOP InChIKey InChI 1.06 GTOGBZHDDNMJNU-NZSBQQPZSA-N A1JOP SMILES_CANONICAL CACTVS 3.385 "C[C@H](CCC(O)=O)[C@H]1CC[C@H]2[C@@H]3C[C@@H](NCCC4=NC=NC4)[C@@]5(O)C[C@@H](O)CC[C@]5(C)[C@H]3CC[C@]12C" A1JOP SMILES CACTVS 3.385 "C[CH](CCC(O)=O)[CH]1CC[CH]2[CH]3C[CH](NCCC4=NC=NC4)[C]5(O)C[CH](O)CC[C]5(C)[CH]3CC[C]12C" A1JOP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CCC(=O)O)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2C[C@H]([C@@]4([C@@]3(CC[C@@H](C4)O)C)O)NCCC5=NC=NC5)C" A1JOP SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCC(=O)O)C1CCC2C1(CCC3C2CC(C4(C3(CCC(C4)O)C)O)NCCC5=NC=NC5)C" # _pdbx_chem_comp_identifier.comp_id A1JOP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{R})-4-[(3~{S},5~{R},6~{R},8~{S},9~{S},10~{R},13~{R},14~{S},17~{R})-6-[2-(4~{H}-imidazol-5-yl)ethylamino]-10,13-dimethyl-3,5-bis(oxidanyl)-1,2,3,4,6,7,8,9,11,12,14,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JOP "Create component" 2025-09-05 PDBE A1JOP "Initial release" 2026-09-16 RCSB #