data_A1JPA # _chem_comp.id A1JPA _chem_comp.name "3-[1-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-1,2,3-triazol-4-yl]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H18 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-16 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 390.354 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JPA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SOZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JPA C1 C1 C 0 1 N N R N N N 53.890 -67.034 -3.815 2.248 2.144 -0.374 C1 A1JPA 1 A1JPA C11 C2 C 0 1 Y N N N N N 51.106 -64.876 -3.142 4.017 -0.550 0.387 C11 A1JPA 2 A1JPA C12 C3 C 0 1 Y N N N N N 50.334 -64.202 -4.077 4.547 -1.612 -0.365 C12 A1JPA 3 A1JPA C14 C4 C 0 1 Y N N N N N 52.292 -64.627 -4.948 2.618 -1.113 -1.221 C14 A1JPA 4 A1JPA C16 C5 C 0 1 Y N N N N N 49.340 -64.783 -1.623 5.897 -0.572 1.709 C16 A1JPA 5 A1JPA C18 C6 C 0 1 Y N N N N N 49.040 -63.832 -3.744 5.806 -2.120 -0.001 C18 A1JPA 6 A1JPA C2 C7 C 0 1 N N S N N N 55.366 -67.121 -3.461 0.886 2.810 -0.671 C2 A1JPA 7 A1JPA C22 C8 C 0 1 Y N N N N N 59.531 -66.347 -1.314 -4.256 0.070 0.185 C22 A1JPA 8 A1JPA C23 C9 C 0 1 Y N N N N N 58.439 -65.517 -1.461 -3.673 1.187 -0.308 C23 A1JPA 9 A1JPA C24 C10 C 0 1 N N N N N N 60.328 -66.476 -0.057 -5.689 -0.080 0.626 C24 A1JPA 10 A1JPA C25 C11 C 0 1 N N N N N N 59.498 -65.874 1.055 -6.336 -1.243 -0.130 C25 A1JPA 11 A1JPA C26 C12 C 0 1 N N N N N N 60.438 -65.568 2.189 -7.769 -1.393 0.310 C26 A1JPA 12 A1JPA C3 C13 C 0 1 N N R N N N 55.691 -65.772 -2.821 -0.152 1.777 -0.179 C3 A1JPA 13 A1JPA C5 C14 C 0 1 N N R N N N 53.410 -65.823 -3.031 1.872 0.787 0.262 C5 A1JPA 14 A1JPA C9 C15 C 0 1 N N N N N N 56.906 -65.103 -3.448 -1.364 1.754 -1.113 C9 A1JPA 15 A1JPA N10 N1 N 0 1 Y N N N N N 58.024 -65.675 -2.711 -2.386 0.858 -0.565 N10 A1JPA 16 A1JPA N13 N2 N 0 1 Y N N N N N 51.084 -64.053 -5.186 3.643 -1.907 -1.330 N13 A1JPA 17 A1JPA N15 N3 N 0 1 Y N N N N N 50.595 -65.156 -1.919 4.722 -0.064 1.404 N15 A1JPA 18 A1JPA N17 N4 N 0 1 Y N N N N N 48.572 -64.131 -2.511 6.434 -1.572 1.034 N17 A1JPA 19 A1JPA N19 N5 N 0 1 N N N N N N 48.263 -63.173 -4.639 6.377 -3.165 -0.705 N19 A1JPA 20 A1JPA N20 N6 N 0 1 Y N N N N N 58.792 -66.600 -3.394 -2.213 -0.377 -0.246 N20 A1JPA 21 A1JPA N21 N7 N 0 1 Y N N N N N 59.754 -67.010 -2.470 -3.311 -0.877 0.200 N21 A1JPA 22 A1JPA N8 N8 N 0 1 Y N N N N N 52.292 -65.125 -3.701 2.801 -0.257 -0.176 N8 A1JPA 23 A1JPA O27 O1 O 0 1 N N N N N N 60.334 -64.471 2.739 -8.227 -0.646 1.143 O27 A1JPA 24 A1JPA O28 O2 O 0 1 N N N N N N 61.275 -66.416 2.551 -8.538 -2.356 -0.222 O28 A1JPA 25 A1JPA O4 O3 O 0 1 N N N N N N 54.535 -64.952 -2.972 0.539 0.510 -0.221 O4 A1JPA 26 A1JPA O6 O4 O 0 1 N N N N N N 55.610 -68.174 -2.520 0.760 4.035 0.053 O6 A1JPA 27 A1JPA O7 O5 O 0 1 N N N N N N 53.180 -68.226 -3.442 3.006 2.934 0.544 O7 A1JPA 28 A1JPA H1 H1 H 0 1 N N N N N N 53.782 -66.839 -4.892 2.808 1.990 -1.297 H1 A1JPA 29 A1JPA H14 H2 H 0 1 N N N N N N 53.115 -64.675 -5.645 1.750 -1.130 -1.863 H14 A1JPA 30 A1JPA H16 H3 H 0 1 N N N N N N 48.938 -65.013 -0.647 6.443 -0.157 2.544 H16 A1JPA 31 A1JPA H2 H4 H 0 1 N N N N N N 55.964 -67.256 -4.374 0.772 2.986 -1.741 H2 A1JPA 32 A1JPA H23 H5 H 0 1 N N N N N N 58.009 -64.870 -0.711 -4.141 2.148 -0.465 H23 A1JPA 33 A1JPA H241 H6 H 0 0 N N N N N N 61.279 -65.933 -0.155 -5.722 -0.280 1.696 H241 A1JPA 34 A1JPA H242 H7 H 0 0 N N N N N N 60.531 -67.536 0.155 -6.233 0.840 0.411 H242 A1JPA 35 A1JPA H251 H8 H 0 0 N N N N N N 58.730 -66.590 1.383 -6.304 -1.043 -1.201 H251 A1JPA 36 A1JPA H252 H9 H 0 0 N N N N N N 59.013 -64.950 0.707 -5.792 -2.163 0.085 H252 A1JPA 37 A1JPA H3 H10 H 0 1 N N N N N N 55.895 -65.935 -1.752 -0.464 2.008 0.840 H3 A1JPA 38 A1JPA H5 H11 H 0 1 N N N N N N 53.106 -66.138 -2.022 1.872 0.865 1.350 H5 A1JPA 39 A1JPA H91 H12 H 0 1 N N N N N N 56.866 -64.012 -3.317 -1.773 2.760 -1.202 H91 A1JPA 40 A1JPA H92 H13 H 0 1 N N N N N N 56.978 -65.342 -4.519 -1.058 1.398 -2.097 H92 A1JPA 41 A1JPA H191 H14 H 0 0 N N N N N N 47.371 -62.981 -4.229 5.908 -3.557 -1.458 H191 A1JPA 42 A1JPA H192 H15 H 0 0 N N N N N N 48.705 -62.313 -4.894 7.247 -3.507 -0.444 H192 A1JPA 43 A1JPA H4 H16 H 0 1 N N N N N N 61.778 -66.074 3.280 -9.451 -2.413 0.091 H4 A1JPA 44 A1JPA HO6 H17 H 0 1 N N N N N N 55.407 -69.011 -2.921 1.426 4.698 -0.176 HO6 A1JPA 45 A1JPA HO7 H18 H 0 1 N N N N N N 52.264 -68.136 -3.677 3.269 3.797 0.196 HO7 A1JPA 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JPA O27 C26 DOUB N N 1 A1JPA C26 O28 SING N N 2 A1JPA C25 C26 SING N N 3 A1JPA C24 C25 SING N N 4 A1JPA C22 C24 SING N N 5 A1JPA C22 N21 SING Y N 6 A1JPA C23 C22 DOUB Y N 7 A1JPA N21 N20 DOUB Y N 8 A1JPA N20 N10 SING Y N 9 A1JPA N10 C23 SING Y N 10 A1JPA C9 N10 SING N N 11 A1JPA C3 C9 SING N N 12 A1JPA C3 C2 SING N N 13 A1JPA O4 C3 SING N N 14 A1JPA O6 C2 SING N N 15 A1JPA C2 C1 SING N N 16 A1JPA C5 O4 SING N N 17 A1JPA C1 C5 SING N N 18 A1JPA N8 C5 SING N N 19 A1JPA O7 C1 SING N N 20 A1JPA N8 C14 SING Y N 21 A1JPA C11 N8 SING Y N 22 A1JPA C14 N13 DOUB Y N 23 A1JPA N13 C12 SING Y N 24 A1JPA C11 N15 DOUB Y N 25 A1JPA C12 C11 SING Y N 26 A1JPA N15 C16 SING Y N 27 A1JPA C16 N17 DOUB Y N 28 A1JPA N17 C18 SING Y N 29 A1JPA C18 C12 DOUB Y N 30 A1JPA N19 C18 SING N N 31 A1JPA C1 H1 SING N N 32 A1JPA C14 H14 SING N N 33 A1JPA C16 H16 SING N N 34 A1JPA C2 H2 SING N N 35 A1JPA C23 H23 SING N N 36 A1JPA C24 H241 SING N N 37 A1JPA C24 H242 SING N N 38 A1JPA C25 H251 SING N N 39 A1JPA C25 H252 SING N N 40 A1JPA C3 H3 SING N N 41 A1JPA C5 H5 SING N N 42 A1JPA C9 H91 SING N N 43 A1JPA C9 H92 SING N N 44 A1JPA N19 H191 SING N N 45 A1JPA N19 H192 SING N N 46 A1JPA O28 H4 SING N N 47 A1JPA O6 HO6 SING N N 48 A1JPA O7 HO7 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JPA InChI InChI 1.06 "InChI=1S/C15H18N8O5/c16-13-10-14(18-5-17-13)23(6-19-10)15-12(27)11(26)8(28-15)4-22-3-7(20-21-22)1-2-9(24)25/h3,5-6,8,11-12,15,26-27H,1-2,4H2,(H,24,25)(H2,16,17,18)/t8-,11-,12-,15-/m1/s1" A1JPA InChIKey InChI 1.06 IIHZOVZRHFMWMJ-PMXXHBEXSA-N A1JPA SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](Cn4cc(CCC(O)=O)nn4)[C@@H](O)[C@H]3O" A1JPA SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](Cn4cc(CCC(O)=O)nn4)[CH](O)[CH]3O" A1JPA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(nnn1C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)CCC(=O)O" A1JPA SMILES "OpenEye OEToolkits" 2.0.7 "c1c(nnn1CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)CCC(=O)O" # _pdbx_chem_comp_identifier.comp_id A1JPA _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[1-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-1,2,3-triazol-4-yl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JPA "Create component" 2025-09-16 PDBE A1JPA "Initial release" 2026-09-09 RCSB #