data_A1JPB # _chem_comp.id A1JPB _chem_comp.name "4-[1-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-1,2,3-triazol-4-yl]butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H20 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-16 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 404.381 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JPB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SP0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JPB C1 C1 C 0 1 N N N N N N -63.775 64.915 -1.329 -8.282 -1.634 0.041 C1 A1JPB 1 A1JPB C10 C2 C 0 1 N N R N N N -54.431 67.302 -3.583 2.751 2.100 -0.454 C10 A1JPB 2 A1JPB C11 C3 C 0 1 N N R N N N -54.095 65.983 -2.896 2.281 0.809 0.252 C11 A1JPB 3 A1JPB C12 C4 C 0 1 Y N N N N N -52.932 64.805 -4.798 2.806 -1.211 -1.167 C12 A1JPB 4 A1JPB C13 C5 C 0 1 Y N N N N N -51.750 64.994 -2.958 4.306 -0.706 0.368 C13 A1JPB 5 A1JPB C14 C6 C 0 1 Y N N N N N -51.032 64.343 -3.945 4.715 -1.840 -0.354 C14 A1JPB 6 A1JPB C15 C7 C 0 1 Y N N N N N -50.079 64.835 -1.532 6.226 -0.835 1.625 C15 A1JPB 7 A1JPB C16 C8 C 0 1 Y N N N N N -49.722 63.923 -3.630 5.940 -2.437 -0.012 C16 A1JPB 8 A1JPB C2 C9 C 0 1 N N N N N N -62.570 65.839 -1.200 -7.524 -0.516 0.709 C2 A1JPB 9 A1JPB C3 C10 C 0 1 N N N N N N -62.753 67.290 -1.638 -6.078 -0.510 0.210 C3 A1JPB 10 A1JPB C4 C11 C 0 1 N N N N N N -61.465 68.125 -1.490 -5.309 0.625 0.889 C4 A1JPB 11 A1JPB C5 C12 C 0 1 Y N N N N N -60.338 67.572 -2.304 -3.884 0.631 0.398 C5 A1JPB 12 A1JPB C6 C13 C 0 1 Y N N N N N -59.466 66.555 -2.040 -3.224 1.671 -0.161 C6 A1JPB 13 A1JPB C7 C14 C 0 1 N N N N N N -57.590 65.550 -3.431 -0.904 2.000 -1.062 C7 A1JPB 14 A1JPB C8 C15 C 0 1 N N R N N N -56.339 66.060 -2.763 0.337 1.954 -0.169 C8 A1JPB 15 A1JPB C9 C16 C 0 1 N N S N N N -55.906 67.468 -3.201 1.443 2.871 -0.737 C9 A1JPB 16 A1JPB N1 N1 N 0 1 Y N N N N N -58.683 66.463 -3.142 -1.980 1.221 -0.444 N1 A1JPB 17 A1JPB N2 N2 N 0 1 Y N N N N N -59.052 67.373 -4.058 -1.904 -0.011 -0.077 N2 A1JPB 18 A1JPB N3 N3 N 0 1 Y N N N N N -60.057 68.050 -3.542 -3.021 -0.391 0.435 N3 A1JPB 19 A1JPB N4 N4 N 0 1 Y N N N N N -52.972 65.292 -3.516 3.101 -0.330 -0.169 N4 A1JPB 20 A1JPB N5 N5 N 0 1 Y N N N N N -51.795 64.228 -5.093 3.753 -2.098 -1.271 N5 A1JPB 21 A1JPB N6 N6 N 0 1 Y N N N N N -51.322 65.274 -1.718 5.086 -0.242 1.339 N6 A1JPB 22 A1JPB N7 N7 N 0 1 Y N N N N N -49.267 64.189 -2.380 6.652 -1.903 0.975 N7 A1JPB 23 A1JPB N8 N8 N 0 1 N N N N N N -48.920 63.293 -4.487 6.395 -3.556 -0.687 N8 A1JPB 24 A1JPB O1 O1 O 0 1 N N N N N N -63.578 63.671 -1.295 -7.721 -2.356 -0.749 O1 A1JPB 25 A1JPB O2 O2 O 0 1 N N N N N N -64.915 65.433 -1.473 -9.578 -1.831 0.327 O2 A1JPB 26 A1JPB O3 O3 O 0 1 N N N N N N -56.094 68.377 -2.123 1.447 4.130 -0.061 O3 A1JPB 27 A1JPB O4 O4 O 0 1 N N N N N N -53.590 68.377 -3.220 3.604 2.859 0.406 O4 A1JPB 28 A1JPB O5 O5 O 0 1 N N N N N N -55.245 65.198 -3.091 0.914 0.631 -0.177 O5 A1JPB 29 A1JPB H13 H1 H 0 1 N N N N N N -54.378 67.144 -4.670 3.265 1.861 -1.385 H13 A1JPB 30 A1JPB H15 H2 H 0 1 N N N N N N -53.902 66.158 -1.827 2.326 0.930 1.334 H15 A1JPB 31 A1JPB H16 H3 H 0 1 N N N N N N -53.755 64.889 -5.493 1.915 -1.180 -1.777 H16 A1JPB 32 A1JPB H17 H4 H 0 1 N N N N N N -49.664 65.028 -0.554 6.836 -0.432 2.420 H17 A1JPB 33 A1JPB H1 H5 H 0 1 N N N N N N -62.272 65.848 -0.141 -7.996 0.437 0.467 H1 A1JPB 34 A1JPB H2 H6 H 0 1 N N N N N N -61.758 65.410 -1.806 -7.536 -0.663 1.789 H2 A1JPB 35 A1JPB H3 H7 H 0 1 N N N N N N -63.061 67.302 -2.694 -5.607 -1.463 0.452 H3 A1JPB 36 A1JPB H4 H8 H 0 1 N N N N N N -63.541 67.747 -1.021 -6.066 -0.363 -0.869 H4 A1JPB 37 A1JPB H5 H9 H 0 1 N N N N N N -61.670 69.154 -1.821 -5.780 1.578 0.647 H5 A1JPB 38 A1JPB H6 H10 H 0 1 N N N N N N -61.167 68.133 -0.431 -5.321 0.478 1.969 H6 A1JPB 39 A1JPB H7 H11 H 0 1 N N N N N N -59.412 65.953 -1.145 -3.612 2.662 -0.345 H7 A1JPB 40 A1JPB H8 H12 H 0 1 N N N N N N -57.833 64.549 -3.045 -1.228 3.034 -1.182 H8 A1JPB 41 A1JPB H9 H13 H 0 1 N N N N N N -57.432 65.495 -4.518 -0.665 1.579 -2.039 H9 A1JPB 42 A1JPB H10 H14 H 0 1 N N N N N N -56.496 66.067 -1.674 0.082 2.253 0.848 H10 A1JPB 43 A1JPB H11 H15 H 0 1 N N N N N N -56.485 67.773 -4.085 1.306 3.015 -1.809 H11 A1JPB 44 A1JPB H18 H16 H 0 1 N N N N N N -48.044 63.100 -4.044 5.866 -3.938 -1.405 H18 A1JPB 45 A1JPB H19 H17 H 0 1 N N N N N N -49.346 62.434 -4.772 7.242 -3.960 -0.442 H19 A1JPB 46 A1JPB H20 H18 H 0 1 N N N N N N -65.568 64.747 -1.548 -10.022 -2.561 -0.127 H20 A1JPB 47 A1JPB H12 H19 H 0 1 N N N N N N -55.827 69.248 -2.392 2.122 4.745 -0.378 H12 A1JPB 48 A1JPB H14 H20 H 0 1 N N N N N N -52.700 68.190 -3.494 3.928 3.681 0.013 H14 A1JPB 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JPB O1 C1 DOUB N N 1 A1JPB C1 O2 SING N N 2 A1JPB C1 C2 SING N N 3 A1JPB C2 C3 SING N N 4 A1JPB C3 C4 SING N N 5 A1JPB C4 C5 SING N N 6 A1JPB C5 C6 DOUB Y N 7 A1JPB C5 N3 SING Y N 8 A1JPB C6 N1 SING Y N 9 A1JPB N1 N2 SING Y N 10 A1JPB N1 C7 SING N N 11 A1JPB N2 N3 DOUB Y N 12 A1JPB C7 C8 SING N N 13 A1JPB C8 C9 SING N N 14 A1JPB C8 O5 SING N N 15 A1JPB C9 O3 SING N N 16 A1JPB C9 C10 SING N N 17 A1JPB C10 O4 SING N N 18 A1JPB C10 C11 SING N N 19 A1JPB C11 O5 SING N N 20 A1JPB C11 N4 SING N N 21 A1JPB N4 C12 SING Y N 22 A1JPB N4 C13 SING Y N 23 A1JPB C12 N5 DOUB Y N 24 A1JPB N5 C14 SING Y N 25 A1JPB C13 C14 DOUB Y N 26 A1JPB C13 N6 SING Y N 27 A1JPB C14 C16 SING Y N 28 A1JPB N6 C15 DOUB Y N 29 A1JPB C15 N7 SING Y N 30 A1JPB N7 C16 DOUB Y N 31 A1JPB C16 N8 SING N N 32 A1JPB C10 H13 SING N N 33 A1JPB C11 H15 SING N N 34 A1JPB C12 H16 SING N N 35 A1JPB C15 H17 SING N N 36 A1JPB C2 H1 SING N N 37 A1JPB C2 H2 SING N N 38 A1JPB C3 H3 SING N N 39 A1JPB C3 H4 SING N N 40 A1JPB C4 H5 SING N N 41 A1JPB C4 H6 SING N N 42 A1JPB C6 H7 SING N N 43 A1JPB C7 H8 SING N N 44 A1JPB C7 H9 SING N N 45 A1JPB C8 H10 SING N N 46 A1JPB C9 H11 SING N N 47 A1JPB N8 H18 SING N N 48 A1JPB N8 H19 SING N N 49 A1JPB O2 H20 SING N N 50 A1JPB O3 H12 SING N N 51 A1JPB O4 H14 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JPB InChI InChI 1.06 "InChI=1S/C16H20N8O5/c17-14-11-15(19-6-18-14)24(7-20-11)16-13(28)12(27)9(29-16)5-23-4-8(21-22-23)2-1-3-10(25)26/h4,6-7,9,12-13,16,27-28H,1-3,5H2,(H,25,26)(H2,17,18,19)/t9-,12-,13-,16-/m1/s1" A1JPB InChIKey InChI 1.06 WPSRNWLDNKAZAN-RVXWVPLUSA-N A1JPB SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](Cn4cc(CCCC(O)=O)nn4)[C@@H](O)[C@H]3O" A1JPB SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](Cn4cc(CCCC(O)=O)nn4)[CH](O)[CH]3O" A1JPB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(nnn1C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)CCCC(=O)O" A1JPB SMILES "OpenEye OEToolkits" 2.0.7 "c1c(nnn1CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)CCCC(=O)O" # _pdbx_chem_comp_identifier.comp_id A1JPB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[1-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-1,2,3-triazol-4-yl]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JPB "Create component" 2025-09-16 PDBE A1JPB "Initial release" 2026-09-09 RCSB #