data_A1JPC # _chem_comp.id A1JPC _chem_comp.name "(2~{R},3~{S},4~{R},5~{R})-2-[[4-(aminomethyl)-1,2,3-triazol-1-yl]methyl]-5-(6-aminopurin-9-yl)oxolane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 N9 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-16 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 347.333 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JPC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SP1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JPC C1 C1 C 0 1 N N N N N N 87.624 -18.928 25.285 6.532 1.347 1.050 C1 A1JPC 1 A1JPC C10 C2 C 0 1 Y N N N N N 81.644 -12.173 29.091 -3.099 0.235 0.341 C10 A1JPC 2 A1JPC C11 C3 C 0 1 Y N N N N N 80.708 -11.775 30.044 -3.766 1.244 -0.374 C11 A1JPC 3 A1JPC C12 C4 C 0 1 Y N N N N N 80.648 -10.705 27.553 -5.007 -0.130 1.570 C12 A1JPC 4 A1JPC C13 C5 C 0 1 Y N N N N N 79.739 -10.812 29.711 -5.106 1.515 -0.046 C13 A1JPC 5 A1JPC C2 C6 C 0 1 Y N N N N N 87.245 -18.531 26.700 5.163 0.992 0.529 C2 A1JPC 6 A1JPC C3 C7 C 0 1 Y N N N N N 86.089 -17.847 27.072 4.795 -0.173 -0.053 C3 A1JPC 7 A1JPC C4 C8 C 0 1 N N N N N N 85.164 -17.032 29.324 2.649 -1.059 -1.005 C4 A1JPC 8 A1JPC C5 C9 C 0 1 N N R N N N 84.845 -15.664 28.722 1.419 -1.338 -0.138 C5 A1JPC 9 A1JPC C6 C10 C 0 1 N N S N N N 85.817 -14.605 29.240 0.589 -2.494 -0.737 C6 A1JPC 10 A1JPC C7 C11 C 0 1 N N R N N N 84.921 -13.434 29.625 -0.876 -2.079 -0.475 C7 A1JPC 11 A1JPC C8 C12 C 0 1 N N R N N N 83.588 -13.764 28.962 -0.757 -0.721 0.252 C8 A1JPC 12 A1JPC C9 C13 C 0 1 Y N N N N N 82.054 -13.274 30.921 -1.748 1.122 -1.159 C9 A1JPC 13 A1JPC N1 N1 N 0 1 N N N N N N 86.447 -19.190 24.423 7.274 2.081 0.017 N1 A1JPC 14 A1JPC N2 N2 N 0 1 Y N N N N N 86.115 -17.675 28.404 3.483 -0.044 -0.358 N2 A1JPC 15 A1JPC N3 N3 N 0 1 Y N N N N N 87.286 -18.219 28.946 3.095 1.124 0.018 N3 A1JPC 16 A1JPC N4 N4 N 0 1 Y N N N N N 87.983 -18.753 27.831 4.072 1.765 0.556 N4 A1JPC 17 A1JPC N5 N5 N 0 1 Y N N N N N 82.452 -13.092 29.651 -1.829 0.182 -0.175 N5 A1JPC 18 A1JPC N6 N6 N 0 1 Y N N N N N 80.989 -12.466 31.172 -2.886 1.744 -1.274 N6 A1JPC 19 A1JPC N7 N7 N 0 1 Y N N N N N 81.597 -11.629 27.847 -3.752 -0.417 1.298 N7 A1JPC 20 A1JPC N8 N8 N 0 1 Y N N N N N 79.733 -10.291 28.451 -5.676 0.807 0.923 N8 A1JPC 21 A1JPC N9 N9 N 0 1 N N N N N N 78.816 -10.405 30.630 -5.814 2.497 -0.716 N9 A1JPC 22 A1JPC O1 O1 O 0 1 N N N N N N 86.750 -14.261 28.214 0.888 -3.723 -0.072 O1 A1JPC 23 A1JPC O2 O2 O 0 1 N N N N N N 85.460 -12.161 29.233 -1.527 -3.038 0.360 O2 A1JPC 24 A1JPC O3 O3 O 0 1 N N N N N N 83.528 -15.194 29.051 0.530 -0.200 -0.147 O3 A1JPC 25 A1JPC H3 H1 H 0 1 N N N N N N 88.237 -19.841 25.329 6.433 1.970 1.939 H3 A1JPC 26 A1JPC H4 H2 H 0 1 N N N N N N 88.212 -18.113 24.838 7.071 0.434 1.306 H4 A1JPC 27 A1JPC H15 H3 H 0 1 N N N N N N 80.625 -10.284 26.559 -5.508 -0.679 2.354 H15 A1JPC 28 A1JPC H20 H4 H 0 1 N N N N N N 85.308 -17.513 26.405 5.423 -1.033 -0.237 H20 A1JPC 29 A1JPC H6 H5 H 0 1 N N N N N N 84.248 -17.635 29.407 3.223 -1.978 -1.127 H6 A1JPC 30 A1JPC H7 H6 H 0 1 N N N N N N 85.617 -16.914 30.319 2.329 -0.698 -1.983 H7 A1JPC 31 A1JPC H8 H7 H 0 1 N N N N N N 84.952 -15.731 27.629 1.722 -1.577 0.882 H8 A1JPC 32 A1JPC H9 H8 H 0 1 N N N N N N 86.335 -14.984 30.133 0.775 -2.583 -1.808 H9 A1JPC 33 A1JPC H11 H9 H 0 1 N N N N N N 84.778 -13.452 30.716 -1.415 -1.965 -1.416 H11 A1JPC 34 A1JPC H13 H10 H 0 1 N N N N N N 83.621 -13.447 27.909 -0.791 -0.864 1.332 H13 A1JPC 35 A1JPC H14 H11 H 0 1 N N N N N N 82.507 -13.953 31.629 -0.870 1.322 -1.754 H14 A1JPC 36 A1JPC H1 H12 H 0 1 N N N N N N 86.755 -19.446 23.507 8.196 2.330 0.342 H1 A1JPC 37 A1JPC H2 H13 H 0 1 N N N N N N 85.907 -19.936 24.814 7.325 1.549 -0.839 H2 A1JPC 38 A1JPC H16 H15 H 0 1 N N N N N N 78.212 -9.723 30.217 -5.386 3.008 -1.421 H16 A1JPC 39 A1JPC H17 H16 H 0 1 N N N N N N 78.276 -11.191 30.930 -6.738 2.675 -0.480 H17 A1JPC 40 A1JPC H10 H17 H 0 1 N N N N N N 87.352 -13.603 28.541 0.394 -4.483 -0.408 H10 A1JPC 41 A1JPC H12 H18 H 0 1 N N N N N N 84.864 -11.470 29.496 -1.575 -3.925 -0.023 H12 A1JPC 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JPC N1 C1 SING N N 1 A1JPC C1 C2 SING N N 2 A1JPC C2 C3 DOUB Y N 3 A1JPC C2 N4 SING Y N 4 A1JPC C3 N2 SING Y N 5 A1JPC N3 N2 SING Y N 6 A1JPC N2 C4 SING N N 7 A1JPC N4 N3 DOUB Y N 8 A1JPC C4 C5 SING N N 9 A1JPC C5 C6 SING N N 10 A1JPC C5 O3 SING N N 11 A1JPC O1 C6 SING N N 12 A1JPC C6 C7 SING N N 13 A1JPC C7 O2 SING N N 14 A1JPC C8 C7 SING N N 15 A1JPC O3 C8 SING N N 16 A1JPC N5 C8 SING N N 17 A1JPC N5 C9 SING Y N 18 A1JPC C10 N5 SING Y N 19 A1JPC C9 N6 DOUB Y N 20 A1JPC N6 C11 SING Y N 21 A1JPC C10 C11 DOUB Y N 22 A1JPC N7 C10 SING Y N 23 A1JPC C11 C13 SING Y N 24 A1JPC C12 N7 DOUB Y N 25 A1JPC N8 C12 SING Y N 26 A1JPC C13 N8 DOUB Y N 27 A1JPC N9 C13 SING N N 28 A1JPC C1 H3 SING N N 29 A1JPC C1 H4 SING N N 30 A1JPC C12 H15 SING N N 31 A1JPC C3 H20 SING N N 32 A1JPC C4 H6 SING N N 33 A1JPC C4 H7 SING N N 34 A1JPC C5 H8 SING N N 35 A1JPC C6 H9 SING N N 36 A1JPC C7 H11 SING N N 37 A1JPC C8 H13 SING N N 38 A1JPC C9 H14 SING N N 39 A1JPC N1 H1 SING N N 40 A1JPC N1 H2 SING N N 41 A1JPC N9 H16 SING N N 42 A1JPC N9 H17 SING N N 43 A1JPC O1 H10 SING N N 44 A1JPC O2 H12 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JPC InChI InChI 1.06 "InChI=1S/C13H17N9O3/c14-1-6-2-21(20-19-6)3-7-9(23)10(24)13(25-7)22-5-18-8-11(15)16-4-17-12(8)22/h2,4-5,7,9-10,13,23-24H,1,3,14H2,(H2,15,16,17)/t7-,9-,10-,13-/m1/s1" A1JPC InChIKey InChI 1.06 NFSJJKJBIKSLTB-QYVSTXNMSA-N A1JPC SMILES_CANONICAL CACTVS 3.385 "NCc1cn(C[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)nn1" A1JPC SMILES CACTVS 3.385 "NCc1cn(C[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)nn1" A1JPC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(nnn1C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)CN" A1JPC SMILES "OpenEye OEToolkits" 2.0.7 "c1c(nnn1CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)CN" # _pdbx_chem_comp_identifier.comp_id A1JPC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{R},5~{R})-2-[[4-(aminomethyl)-1,2,3-triazol-1-yl]methyl]-5-(6-aminopurin-9-yl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JPC "Create component" 2025-09-16 PDBE A1JPC "Initial release" 2026-09-09 RCSB #