data_A1JPD # _chem_comp.id A1JPD _chem_comp.name "4-[[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-6,8-dihydropurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-1,2,3-triazol-4-yl]methyl]benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-16 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 454.439 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JPD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SP2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JPD N N1 N 0 1 N N N N N N -48.233 62.943 -4.506 7.526 2.261 1.000 N A1JPD 1 A1JPD C C1 C 0 1 N N R N N N -49.065 63.627 -3.674 7.312 0.831 0.742 C A1JPD 2 A1JPD O O1 O 0 1 N N N N N N -54.910 64.716 -3.005 1.515 0.011 -0.217 O A1JPD 3 A1JPD C1 C2 C 0 1 N N N N N N -50.479 63.935 -4.049 5.867 0.502 1.066 C1 A1JPD 4 A1JPD C10 C3 C 0 1 Y N N N N N -63.871 63.318 -5.754 -5.728 -1.020 0.567 C10 A1JPD 5 A1JPD C11 C4 C 0 1 Y N N N N N -63.302 62.605 -6.810 -6.776 -0.128 0.332 C11 A1JPD 6 A1JPD C12 C5 C 0 1 N N N N N N -64.101 61.657 -7.665 -8.057 -0.283 1.051 C12 A1JPD 7 A1JPD C13 C6 C 0 1 Y N N N N N -61.947 62.773 -7.079 -6.608 0.911 -0.586 C13 A1JPD 8 A1JPD C14 C7 C 0 1 Y N N N N N -61.164 63.637 -6.301 -5.409 1.050 -1.253 C14 A1JPD 9 A1JPD C15 C8 C 0 1 Y N N N N N -59.635 66.527 -6.177 -2.229 2.658 -1.132 C15 A1JPD 10 A1JPD C16 C9 C 0 1 N N S N N N -55.551 66.901 -3.529 0.704 -2.245 -0.130 C16 A1JPD 11 A1JPD C17 C10 C 0 1 N N R N N N -54.100 66.690 -3.923 2.177 -2.175 0.342 C17 A1JPD 12 A1JPD C18 C11 C 0 1 N N N N N N -51.316 64.683 -3.087 5.060 -0.069 -0.041 C18 A1JPD 13 A1JPD C19 C12 C 0 1 N N N N N N -49.460 64.730 -1.637 6.897 0.040 -1.480 C19 A1JPD 14 A1JPD C2 C13 C 0 1 N N N N N N -52.503 64.243 -4.862 3.801 0.125 1.841 C2 A1JPD 15 A1JPD C3 C14 C 0 1 N N R N N N -53.713 65.520 -3.041 2.665 -0.857 -0.312 C3 A1JPD 16 A1JPD C4 C15 C 0 1 N N R N N N -56.105 65.530 -3.104 0.358 -0.791 -0.505 C4 A1JPD 17 A1JPD C5 C16 C 0 1 N N N N N N -57.263 64.812 -3.895 -0.831 -0.308 0.328 C5 A1JPD 18 A1JPD C6 C17 C 0 1 Y N N N N N -59.543 65.706 -5.057 -2.198 1.310 -1.019 C6 A1JPD 19 A1JPD C7 C18 C 0 1 N N N N N N -60.839 65.277 -4.370 -3.067 0.320 -1.750 C7 A1JPD 20 A1JPD C8 C19 C 0 1 Y N N N N N -61.713 64.355 -5.235 -4.374 0.162 -1.016 C8 A1JPD 21 A1JPD C9 C20 C 0 1 Y N N N N N -63.077 64.179 -4.982 -4.534 -0.870 -0.108 C9 A1JPD 22 A1JPD N1 N2 N 0 1 N N N N N N -51.273 63.699 -5.117 5.156 0.611 2.125 N1 A1JPD 23 A1JPD N2 N3 N 0 1 N N N N N N -52.537 64.828 -3.643 3.796 -0.299 0.434 N2 A1JPD 24 A1JPD N3 N4 N 0 1 Y N N N N N -58.198 65.527 -4.813 -1.228 1.030 -0.118 N3 A1JPD 25 A1JPD N4 N5 N 0 1 Y N N N N N -58.399 66.816 -6.639 -1.290 3.131 -0.305 N4 A1JPD 26 A1JPD N5 N6 N 0 1 Y N N N N N -57.470 66.186 -5.801 -0.714 2.141 0.281 N5 A1JPD 27 A1JPD N6 N7 N 0 1 N N N N N N -50.751 65.041 -1.907 5.625 -0.254 -1.210 N6 A1JPD 28 A1JPD N7 N8 N 0 1 N N N N N N -48.631 64.047 -2.462 7.741 0.542 -0.638 N7 A1JPD 29 A1JPD O1 O2 O 0 1 N N N N N N -63.475 61.016 -8.644 -9.067 0.580 0.822 O1 A1JPD 30 A1JPD O2 O3 O 0 1 N N N N N N -65.298 61.436 -7.489 -8.201 -1.187 1.849 O2 A1JPD 31 A1JPD O3 O4 O 0 1 N N N N N N -55.540 67.729 -2.374 0.581 -3.099 -1.269 O3 A1JPD 32 A1JPD O4 O5 O 0 1 N N N N N N -53.266 67.839 -3.670 2.922 -3.293 -0.145 O4 A1JPD 33 A1JPD H4 H1 H 0 1 N N N N N N -47.337 62.841 -4.073 8.499 2.506 0.895 H4 A1JPD 34 A1JPD H5 H2 H 0 1 N N N N N N -48.618 62.039 -4.692 6.944 2.828 0.402 H5 A1JPD 35 A1JPD H21 H4 H 0 1 N N N N N N -48.737 64.576 -4.123 7.948 0.265 1.423 H21 A1JPD 36 A1JPD H12 H5 H 0 1 N N N N N N -64.922 63.207 -5.531 -5.850 -1.823 1.278 H12 A1JPD 37 A1JPD H14 H6 H 0 1 N N N N N N -61.494 62.232 -7.896 -7.415 1.604 -0.772 H14 A1JPD 38 A1JPD H15 H7 H 0 1 N N N N N N -60.115 63.750 -6.530 -5.277 1.853 -1.963 H15 A1JPD 39 A1JPD H16 H8 H 0 1 N N N N N N -60.558 66.881 -6.612 -2.882 3.239 -1.768 H16 A1JPD 40 A1JPD H2 H9 H 0 1 N N N N N N -56.136 67.326 -4.358 0.061 -2.594 0.678 H2 A1JPD 41 A1JPD H3 H10 H 0 1 N N N N N N -54.043 66.392 -4.980 2.235 -2.115 1.429 H3 A1JPD 42 A1JPD H19 H11 H 0 1 N N N N N N -49.060 65.053 -0.687 7.251 -0.157 -2.481 H19 A1JPD 43 A1JPD H24 H12 H 0 1 N N N N N N -53.262 63.447 -4.899 3.564 -0.720 2.487 H24 A1JPD 44 A1JPD H6 H13 H 0 1 N N N N N N -52.727 64.999 -5.629 3.078 0.926 1.993 H6 A1JPD 45 A1JPD H H14 H 0 1 N N N N N N -53.460 65.884 -2.034 2.935 -1.023 -1.354 H A1JPD 46 A1JPD H1 H15 H 0 1 N N N N N N -56.487 65.663 -2.081 0.116 -0.730 -1.566 H1 A1JPD 47 A1JPD H7 H16 H 0 1 N N N N N N -57.896 64.334 -3.133 -1.667 -0.996 0.202 H7 A1JPD 48 A1JPD H8 H17 H 0 1 N N N N N N -56.775 64.038 -4.505 -0.547 -0.271 1.380 H8 A1JPD 49 A1JPD H10 H18 H 0 1 N N N N N N -61.419 66.179 -4.126 -3.259 0.681 -2.760 H10 A1JPD 50 A1JPD H9 H19 H 0 1 N N N N N N -60.582 64.744 -3.443 -2.559 -0.643 -1.798 H9 A1JPD 51 A1JPD H11 H20 H 0 1 N N N N N N -63.533 64.722 -4.168 -3.721 -1.556 0.076 H11 A1JPD 52 A1JPD H13 H21 H 0 1 N N N N N N -64.088 60.444 -9.091 -9.886 0.438 1.316 H13 A1JPD 53 A1JPD H17 H22 H 0 1 N N N N N N -55.202 68.587 -2.602 0.787 -4.026 -1.090 H17 A1JPD 54 A1JPD H18 H23 H 0 1 N N N N N N -52.374 67.648 -3.935 2.596 -4.149 0.166 H18 A1JPD 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JPD C12 O2 DOUB N N 1 A1JPD O1 C12 SING N N 2 A1JPD C11 C12 SING N N 3 A1JPD C11 C10 DOUB Y N 4 A1JPD C13 C11 SING Y N 5 A1JPD C10 C9 SING Y N 6 A1JPD C9 C8 DOUB Y N 7 A1JPD C14 C13 DOUB Y N 8 A1JPD C8 C14 SING Y N 9 A1JPD C7 C8 SING N N 10 A1JPD C6 C7 SING N N 11 A1JPD C6 C15 DOUB Y N 12 A1JPD N3 C6 SING Y N 13 A1JPD C15 N4 SING Y N 14 A1JPD N4 N5 DOUB Y N 15 A1JPD N5 N3 SING Y N 16 A1JPD C5 N3 SING N N 17 A1JPD C4 C5 SING N N 18 A1JPD C4 O SING N N 19 A1JPD C16 C4 SING N N 20 A1JPD O C3 SING N N 21 A1JPD O3 C16 SING N N 22 A1JPD C17 C16 SING N N 23 A1JPD O4 C17 SING N N 24 A1JPD C3 C17 SING N N 25 A1JPD N2 C3 SING N N 26 A1JPD N2 C2 SING N N 27 A1JPD C18 N2 SING N N 28 A1JPD C2 N1 SING N N 29 A1JPD N1 C1 DOUB N N 30 A1JPD C18 C1 SING N N 31 A1JPD N6 C18 DOUB N N 32 A1JPD C1 C SING N N 33 A1JPD C19 N6 SING N N 34 A1JPD N7 C19 DOUB N N 35 A1JPD C N7 SING N N 36 A1JPD N C SING N N 37 A1JPD N H4 SING N N 38 A1JPD N H5 SING N N 39 A1JPD C H21 SING N N 40 A1JPD C10 H12 SING N N 41 A1JPD C13 H14 SING N N 42 A1JPD C14 H15 SING N N 43 A1JPD C15 H16 SING N N 44 A1JPD C16 H2 SING N N 45 A1JPD C17 H3 SING N N 46 A1JPD C19 H19 SING N N 47 A1JPD C2 H24 SING N N 48 A1JPD C2 H6 SING N N 49 A1JPD C3 H SING N N 50 A1JPD C4 H1 SING N N 51 A1JPD C5 H7 SING N N 52 A1JPD C5 H8 SING N N 53 A1JPD C7 H10 SING N N 54 A1JPD C7 H9 SING N N 55 A1JPD C9 H11 SING N N 56 A1JPD O1 H13 SING N N 57 A1JPD O3 H17 SING N N 58 A1JPD O4 H18 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JPD InChI InChI 1.06 "InChI=1S/C20H22N8O5/c21-17-14-18(23-8-22-17)27(9-24-14)19-16(30)15(29)13(33-19)7-28-12(6-25-26-28)5-10-1-3-11(4-2-10)20(31)32/h1-4,6,8,13,15-17,19,29-30H,5,7,9,21H2,(H,31,32)/t13-,15-,16-,17-,19-/m1/s1" A1JPD InChIKey InChI 1.06 XTJPYRLPZJYDOR-OAIGWWADSA-N A1JPD SMILES_CANONICAL CACTVS 3.385 "N[C@@H]1N=CN=C2N(CN=C12)[C@@H]3O[C@H](Cn4nncc4Cc5ccc(cc5)C(O)=O)[C@@H](O)[C@H]3O" A1JPD SMILES CACTVS 3.385 "N[CH]1N=CN=C2N(CN=C12)[CH]3O[CH](Cn4nncc4Cc5ccc(cc5)C(O)=O)[CH](O)[CH]3O" A1JPD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cc2cnnn2C[C@@H]3[C@H]([C@H]([C@@H](O3)N4CN=C5C4=NC=NC5N)O)O)C(=O)O" A1JPD SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cc2cnnn2CC3C(C(C(O3)N4CN=C5C4=NC=NC5N)O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1JPD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-6,8-dihydropurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-1,2,3-triazol-4-yl]methyl]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JPD "Create component" 2025-09-16 PDBE A1JPD "Initial release" 2026-09-09 RCSB #