data_A1JPE # _chem_comp.id A1JPE _chem_comp.name "4-[4-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-1,2,3-triazol-1-yl]butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H18 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-16 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 390.354 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JPE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SP3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JPE C1 C1 C 0 1 N N N N N N -61.299 66.422 -34.838 -7.794 1.435 -0.316 C1 A1JPE 1 A1JPE C10 C2 C 0 1 N N R N N N -53.993 65.538 -29.238 2.023 -0.885 -0.545 C10 A1JPE 2 A1JPE C11 C3 C 0 1 Y N N N N N -52.806 64.433 -31.199 2.290 1.494 0.250 C11 A1JPE 3 A1JPE C12 C4 C 0 1 Y N N N N N -50.797 64.103 -30.364 4.437 1.769 0.112 C12 A1JPE 4 A1JPE C13 C5 C 0 1 Y N N N N N -51.604 64.715 -29.403 4.154 0.461 -0.317 C13 A1JPE 5 A1JPE C14 C6 C 0 1 Y N N N N N -49.778 64.681 -27.919 6.396 0.118 -0.691 C14 A1JPE 6 A1JPE C15 C7 C 0 1 Y N N N N N -49.462 63.796 -30.064 5.777 2.193 0.110 C15 A1JPE 7 A1JPE C2 C8 C 0 1 N N N N N N -60.648 67.722 -34.415 -6.496 1.670 0.412 C2 A1JPE 8 A1JPE C3 C9 C 0 1 N N N N N N -59.943 67.539 -33.075 -5.513 0.546 0.079 C3 A1JPE 9 A1JPE C4 C10 C 0 1 N N N N N N -58.936 66.397 -33.150 -4.195 0.785 0.819 C4 A1JPE 10 A1JPE C5 C11 C 0 1 Y N N N N N -57.480 65.631 -29.922 -1.495 -1.377 -0.141 C5 A1JPE 11 A1JPE C6 C12 C 0 1 Y N N N N N -57.326 66.239 -31.165 -2.007 -0.132 -0.000 C6 A1JPE 12 A1JPE C7 C13 C 0 1 N N R N N N -56.295 65.782 -29.042 -0.127 -1.736 -0.663 C7 A1JPE 13 A1JPE C8 C14 C 0 1 N N S N N N -55.732 67.176 -29.307 0.613 -2.613 0.366 C8 A1JPE 14 A1JPE C9 C15 C 0 1 N N R N N N -54.303 66.936 -29.780 1.899 -1.815 0.689 C9 A1JPE 15 A1JPE N1 N1 N 0 1 Y N N N N N -58.474 66.018 -31.810 -3.254 -0.291 0.500 N1 A1JPE 16 A1JPE N2 N2 N 0 1 Y N N N N N -59.372 65.278 -31.012 -3.471 -1.551 0.648 N2 A1JPE 17 A1JPE N3 N3 N 0 1 Y N N N N N -58.699 65.044 -29.787 -2.439 -2.226 0.280 N3 A1JPE 18 A1JPE N4 N4 N 0 1 Y N N N N N -52.835 64.896 -29.936 2.794 0.316 -0.215 N4 A1JPE 19 A1JPE N5 N5 N 0 1 Y N N N N N -51.563 63.941 -31.471 3.256 2.347 0.438 N5 A1JPE 20 A1JPE N6 N6 N 0 1 Y N N N N N -51.073 64.990 -28.179 5.155 -0.322 -0.706 N6 A1JPE 21 A1JPE N7 N7 N 0 1 Y N N N N N -48.967 64.094 -28.827 6.710 1.338 -0.296 N7 A1JPE 22 A1JPE N8 N8 N 0 1 N N N N N N -48.666 63.204 -30.999 6.117 3.470 0.521 N8 A1JPE 23 A1JPE O1 O1 O 0 1 N N N N N N -61.268 66.111 -36.051 -7.922 0.465 -1.025 O1 A1JPE 24 A1JPE O2 O2 O 0 1 N N N N N N -61.854 65.709 -33.964 -8.810 2.300 -0.174 O2 A1JPE 25 A1JPE O3 O3 O 0 1 N N N N N N -55.807 67.958 -28.110 0.941 -3.882 -0.202 O3 A1JPE 26 A1JPE O4 O4 O 0 1 N N N N N N -53.397 67.958 -29.332 3.028 -2.685 0.787 O4 A1JPE 27 A1JPE O5 O5 O 0 1 N N N N N N -55.244 64.850 -29.376 0.653 -0.544 -0.849 O5 A1JPE 28 A1JPE H13 H1 H 0 1 N N N N N N -53.747 65.634 -28.170 2.480 -1.416 -1.381 H13 A1JPE 29 A1JPE H14 H2 H 0 1 N N N N N N -53.637 64.448 -31.889 1.245 1.693 0.432 H14 A1JPE 30 A1JPE H15 H3 H 0 1 N N N N N N -49.377 64.914 -26.944 7.186 -0.544 -1.014 H15 A1JPE 31 A1JPE H1 H4 H 0 1 N N N N N N -59.913 68.026 -35.175 -6.073 2.626 0.102 H1 A1JPE 32 A1JPE H2 H5 H 0 1 N N N N N N -61.419 68.501 -34.318 -6.680 1.686 1.487 H2 A1JPE 33 A1JPE H3 H6 H 0 1 N N N N N N -59.416 68.469 -32.814 -5.935 -0.410 0.389 H3 A1JPE 34 A1JPE H4 H7 H 0 1 N N N N N N -60.691 67.311 -32.301 -5.329 0.530 -0.995 H4 A1JPE 35 A1JPE H5 H8 H 0 1 N N N N N N -59.412 65.527 -33.626 -3.772 1.741 0.509 H5 A1JPE 36 A1JPE H6 H9 H 0 1 N N N N N N -58.073 66.717 -33.752 -4.379 0.801 1.893 H6 A1JPE 37 A1JPE H7 H10 H 0 1 N N N N N N -56.462 66.775 -31.530 -1.518 0.801 -0.239 H7 A1JPE 38 A1JPE H8 H11 H 0 1 N N N N N N -56.585 65.690 -27.985 -0.221 -2.272 -1.607 H8 A1JPE 39 A1JPE H9 H12 H 0 1 N N N N N N -56.307 67.651 -30.116 0.008 -2.741 1.264 H9 A1JPE 40 A1JPE H11 H13 H 0 1 N N N N N N -54.300 66.893 -30.879 1.778 -1.234 1.603 H11 A1JPE 41 A1JPE H16 H14 H 0 1 N N N N N N -47.754 63.058 -30.617 5.426 4.084 0.814 H16 A1JPE 42 A1JPE H17 H15 H 0 1 N N N N N N -49.061 62.324 -31.264 7.045 3.750 0.515 H17 A1JPE 43 A1JPE H18 H16 H 0 1 N N N N N N -62.224 64.936 -34.374 -9.623 2.107 -0.661 H18 A1JPE 44 A1JPE H10 H17 H 0 1 N N N N N N -55.457 68.825 -28.275 1.408 -4.475 0.402 H10 A1JPE 45 A1JPE H12 H18 H 0 1 N N N N N N -52.522 67.767 -29.649 2.956 -3.346 1.490 H12 A1JPE 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JPE O1 C1 DOUB N N 1 A1JPE C1 O2 SING N N 2 A1JPE C2 C1 SING N N 3 A1JPE C3 C2 SING N N 4 A1JPE C4 C3 SING N N 5 A1JPE N1 C4 SING N N 6 A1JPE N1 N2 SING Y N 7 A1JPE C6 N1 SING Y N 8 A1JPE N2 N3 DOUB Y N 9 A1JPE N3 C5 SING Y N 10 A1JPE C5 C6 DOUB Y N 11 A1JPE C7 C5 SING N N 12 A1JPE C7 C8 SING N N 13 A1JPE O5 C7 SING N N 14 A1JPE O3 C8 SING N N 15 A1JPE C8 C9 SING N N 16 A1JPE O4 C9 SING N N 17 A1JPE C9 C10 SING N N 18 A1JPE C10 O5 SING N N 19 A1JPE N4 C10 SING N N 20 A1JPE N4 C11 SING Y N 21 A1JPE C13 N4 SING Y N 22 A1JPE C11 N5 DOUB Y N 23 A1JPE N5 C12 SING Y N 24 A1JPE C12 C13 DOUB Y N 25 A1JPE C12 C15 SING Y N 26 A1JPE N6 C13 SING Y N 27 A1JPE C14 N6 DOUB Y N 28 A1JPE N7 C14 SING Y N 29 A1JPE C15 N7 DOUB Y N 30 A1JPE N8 C15 SING N N 31 A1JPE C10 H13 SING N N 32 A1JPE C11 H14 SING N N 33 A1JPE C14 H15 SING N N 34 A1JPE C2 H1 SING N N 35 A1JPE C2 H2 SING N N 36 A1JPE C3 H3 SING N N 37 A1JPE C3 H4 SING N N 38 A1JPE C4 H5 SING N N 39 A1JPE C4 H6 SING N N 40 A1JPE C6 H7 SING N N 41 A1JPE C7 H8 SING N N 42 A1JPE C8 H9 SING N N 43 A1JPE C9 H11 SING N N 44 A1JPE N8 H16 SING N N 45 A1JPE N8 H17 SING N N 46 A1JPE O2 H18 SING N N 47 A1JPE O3 H10 SING N N 48 A1JPE O4 H12 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JPE InChI InChI 1.06 "InChI=1S/C15H18N8O5/c16-13-9-14(18-5-17-13)23(6-19-9)15-11(27)10(26)12(28-15)7-4-22(21-20-7)3-1-2-8(24)25/h4-6,10-12,15,26-27H,1-3H2,(H,24,25)(H2,16,17,18)/t10-,11+,12+,15+/m0/s1" A1JPE InChIKey InChI 1.06 QMPDUCMQIZYBFZ-FUTJPDQTSA-N A1JPE SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]([C@@H](O)[C@H]3O)c4cn(CCCC(O)=O)nn4" A1JPE SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]([CH](O)[CH]3O)c4cn(CCCC(O)=O)nn4" A1JPE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(nnn1CCCC(=O)O)[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" A1JPE SMILES "OpenEye OEToolkits" 2.0.7 "c1c(nnn1CCCC(=O)O)C2C(C(C(O2)n3cnc4c3ncnc4N)O)O" # _pdbx_chem_comp_identifier.comp_id A1JPE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[4-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-1,2,3-triazol-1-yl]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JPE "Create component" 2025-09-16 PDBE A1JPE "Initial release" 2026-09-09 RCSB #