data_A1JPH # _chem_comp.id A1JPH _chem_comp.name "2-[1-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-6,8-dihydropurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-1,2,3-triazol-4-yl]ethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H18 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-16 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 378.343 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JPH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SP5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JPH N N1 N 0 1 N N N N N N -78.779 10.350 30.323 4.921 3.661 0.322 N A1JPH 1 A1JPH C C1 C 0 1 N N R N N N -79.752 10.753 29.463 5.244 2.233 0.203 C A1JPH 2 A1JPH O O1 O 0 1 N N N N N N -83.572 15.062 28.725 0.132 -0.766 -0.050 O A1JPH 3 A1JPH C1 C2 C 0 1 N N N N N N -80.761 11.752 29.868 4.056 1.435 0.708 C1 A1JPH 4 A1JPH C10 C3 C 0 1 N N S N N N -85.877 14.598 29.076 0.240 -3.137 0.305 C10 A1JPH 5 A1JPH C11 C4 C 0 1 N N R N N N -85.009 13.451 29.582 1.607 -2.476 0.606 C11 A1JPH 6 A1JPH C12 C5 C 0 1 N N N N N N -81.775 12.129 28.872 3.448 0.485 -0.255 C12 A1JPH 7 A1JPH C13 C6 C 0 1 N N N N N N -80.801 10.664 27.349 5.001 1.096 -1.890 C13 A1JPH 8 A1JPH C2 C7 C 0 1 N N N N N N -82.120 13.230 30.722 2.346 0.417 1.731 C2 A1JPH 9 A1JPH C3 C8 C 0 1 N N R N N N -83.720 13.649 28.801 1.514 -1.156 -0.200 C3 A1JPH 10 A1JPH C4 C9 C 0 1 N N R N N N -84.866 15.636 28.601 -0.655 -1.966 -0.145 C4 A1JPH 11 A1JPH C5 C10 C 0 1 N N N N N N -84.823 16.885 29.467 -1.876 -1.861 0.771 C5 A1JPH 12 A1JPH C6 C11 C 0 1 Y N N N N N -86.196 18.468 27.973 -4.089 -0.989 -0.030 C6 A1JPH 13 A1JPH C7 C12 C 0 1 Y N N N N N -87.323 19.226 28.274 -4.534 0.217 -0.455 C7 A1JPH 14 A1JPH C8 C13 C 0 1 N N N N N N -88.061 20.129 27.314 -5.932 0.555 -0.902 C8 A1JPH 15 A1JPH C9 C14 C 0 1 N N N N N N -87.746 21.588 27.588 -6.450 1.719 -0.096 C9 A1JPH 16 A1JPH N1 N2 N 0 1 N N N N N N -81.028 12.468 30.983 3.434 1.396 1.826 N1 A1JPH 17 A1JPH N2 N3 N 0 1 N N N N N N -82.560 13.024 29.463 2.401 -0.139 0.371 N2 A1JPH 18 A1JPH N3 N4 N 0 1 Y N N N N N -85.880 17.817 29.098 -2.778 -0.824 0.265 N3 A1JPH 19 A1JPH N4 N5 N 0 1 Y N N N N N -87.663 19.025 29.568 -3.488 1.049 -0.399 N4 A1JPH 20 A1JPH N5 N6 N 0 1 Y N N N N N -86.754 18.126 30.133 -2.462 0.400 0.027 N5 A1JPH 21 A1JPH N6 N7 N 0 1 N N N N N N -81.758 11.568 27.641 3.957 0.388 -1.461 N6 A1JPH 22 A1JPH N7 N8 N 0 1 N N N N N N -79.840 10.264 28.206 5.651 1.966 -1.188 N7 A1JPH 23 A1JPH O1 O2 O 0 1 N N N N N N -88.743 22.466 27.597 -7.683 2.197 -0.323 O1 A1JPH 24 A1JPH O2 O3 O 0 1 N N N N N N -86.600 22.000 27.771 -5.754 2.221 0.754 O2 A1JPH 25 A1JPH O3 O4 O 0 1 N N N N N N -86.686 14.219 27.947 0.367 -4.101 -0.743 O3 A1JPH 26 A1JPH O4 O5 O 0 1 N N N N N N -85.565 12.148 29.322 2.682 -3.289 0.131 O4 A1JPH 27 A1JPH H4 H1 H 0 1 N N N N N N -78.194 9.675 29.873 5.720 4.233 0.092 H4 A1JPH 28 A1JPH H5 H2 H 0 1 N N N N N N -78.228 11.139 30.596 4.127 3.902 -0.253 H5 A1JPH 29 A1JPH H16 H4 H 0 1 N N N N N N -80.406 9.945 29.824 6.093 2.023 0.853 H16 A1JPH 30 A1JPH H2 H5 H 0 1 N N N N N N -86.488 15.006 29.895 -0.165 -3.603 1.203 H2 A1JPH 31 A1JPH H3 H6 H 0 1 N N N N N N -84.814 13.584 30.656 1.715 -2.275 1.672 H3 A1JPH 32 A1JPH H15 H7 H 0 1 N N N N N N -80.805 10.230 26.360 5.331 0.930 -2.905 H15 A1JPH 33 A1JPH H20 H8 H 0 1 N N N N N N -81.856 14.291 30.842 2.492 -0.376 2.465 H20 A1JPH 34 A1JPH H6 H9 H 0 1 N N N N N N -82.920 12.968 31.431 1.387 0.907 1.896 H6 A1JPH 35 A1JPH H H10 H 0 1 N N N N N N -83.843 13.223 27.794 1.753 -1.329 -1.249 H A1JPH 36 A1JPH H1 H11 H 0 1 N N N N N N -85.081 15.913 27.558 -0.977 -2.120 -1.175 H1 A1JPH 37 A1JPH H7 H12 H 0 1 N N N N N N -83.848 17.378 29.338 -2.397 -2.818 0.792 H7 A1JPH 38 A1JPH H8 H13 H 0 1 N N N N N N -84.951 16.596 30.521 -1.552 -1.602 1.779 H8 A1JPH 39 A1JPH H18 H14 H 0 1 N N N N N N -85.681 18.416 27.025 -4.664 -1.898 0.059 H18 A1JPH 40 A1JPH H10 H15 H 0 1 N N N N N N -89.143 19.967 27.428 -5.921 0.822 -1.959 H10 A1JPH 41 A1JPH H11 H16 H 0 1 N N N N N N -87.760 19.883 26.285 -6.581 -0.308 -0.752 H11 A1JPH 42 A1JPH H12 H17 H 0 1 N N N N N N -88.397 23.337 27.754 -7.971 2.944 0.219 H12 A1JPH 43 A1JPH H13 H18 H 0 1 N N N N N N -87.326 13.571 28.218 0.920 -4.860 -0.514 H13 A1JPH 44 A1JPH H14 H19 H 0 1 N N N N N N -84.980 11.480 29.660 2.726 -4.163 0.543 H14 A1JPH 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JPH C9 O2 DOUB N N 1 A1JPH O1 C9 SING N N 2 A1JPH C8 C9 SING N N 3 A1JPH C7 C8 SING N N 4 A1JPH C7 C6 DOUB Y N 5 A1JPH N4 C7 SING Y N 6 A1JPH C6 N3 SING Y N 7 A1JPH N5 N4 DOUB Y N 8 A1JPH N3 N5 SING Y N 9 A1JPH C5 N3 SING N N 10 A1JPH C4 C5 SING N N 11 A1JPH C4 O SING N N 12 A1JPH C10 C4 SING N N 13 A1JPH O C3 SING N N 14 A1JPH O3 C10 SING N N 15 A1JPH C11 C10 SING N N 16 A1JPH O4 C11 SING N N 17 A1JPH C3 C11 SING N N 18 A1JPH N2 C3 SING N N 19 A1JPH N2 C2 SING N N 20 A1JPH C12 N2 SING N N 21 A1JPH C2 N1 SING N N 22 A1JPH N1 C1 DOUB N N 23 A1JPH C12 C1 SING N N 24 A1JPH N6 C12 DOUB N N 25 A1JPH C1 C SING N N 26 A1JPH C13 N6 SING N N 27 A1JPH N7 C13 DOUB N N 28 A1JPH C N7 SING N N 29 A1JPH N C SING N N 30 A1JPH N H4 SING N N 31 A1JPH N H5 SING N N 32 A1JPH C H16 SING N N 33 A1JPH C10 H2 SING N N 34 A1JPH C11 H3 SING N N 35 A1JPH C13 H15 SING N N 36 A1JPH C2 H20 SING N N 37 A1JPH C2 H6 SING N N 38 A1JPH C3 H SING N N 39 A1JPH C4 H1 SING N N 40 A1JPH C5 H7 SING N N 41 A1JPH C5 H8 SING N N 42 A1JPH C6 H18 SING N N 43 A1JPH C8 H10 SING N N 44 A1JPH C8 H11 SING N N 45 A1JPH O1 H12 SING N N 46 A1JPH O3 H13 SING N N 47 A1JPH O4 H14 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JPH InChI InChI 1.06 "InChI=1S/C14H18N8O5/c15-12-9-13(17-4-16-12)22(5-18-9)14-11(26)10(25)7(27-14)3-21-2-6(19-20-21)1-8(23)24/h2,4,7,10-12,14,25-26H,1,3,5,15H2,(H,23,24)/t7-,10-,11-,12?,14-/m1/s1" A1JPH InChIKey InChI 1.06 REEPOHNEFIDMHD-NAPDFCNCSA-N A1JPH SMILES_CANONICAL CACTVS 3.385 "N[C@@H]1N=CN=C2N(CN=C12)[C@@H]3O[C@H](Cn4cc(CC(O)=O)nn4)[C@@H](O)[C@H]3O" A1JPH SMILES CACTVS 3.385 "N[CH]1N=CN=C2N(CN=C12)[CH]3O[CH](Cn4cc(CC(O)=O)nn4)[CH](O)[CH]3O" A1JPH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(nnn1C[C@@H]2[C@H]([C@H]([C@@H](O2)N3CN=C4C3=NC=NC4N)O)O)CC(=O)O" A1JPH SMILES "OpenEye OEToolkits" 2.0.7 "c1c(nnn1CC2C(C(C(O2)N3CN=C4C3=NC=NC4N)O)O)CC(=O)O" # _pdbx_chem_comp_identifier.comp_id A1JPH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[1-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-6,8-dihydropurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-1,2,3-triazol-4-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JPH "Create component" 2025-09-16 PDBE A1JPH "Initial release" 2026-09-09 RCSB #