data_A1JR0 # _chem_comp.id A1JR0 _chem_comp.name "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-(4-azanyl-2-oxidanylidene-1~{H}-pyrimidin-5-yl)propyl]amino]-2-azanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 N10 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-13 _chem_comp.pdbx_modified_date 2026-10-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 518.526 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JR0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SYM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JR0 C10 C1 C 0 1 N N N N N N 21.114 -8.686 -16.955 -5.064 2.905 0.783 C10 A1JR0 1 A1JR0 C20 C2 C 0 1 N N R N N N 24.002 -0.795 -12.633 3.302 0.423 -2.196 C20 A1JR0 2 A1JR0 C30 C3 C 0 1 Y N N N N N 24.375 -1.134 -8.906 4.757 1.253 0.663 C30 A1JR0 3 A1JR0 C02 C4 C 0 1 N N S N N N 17.642 -3.384 -15.005 -1.502 -4.216 -0.059 C02 A1JR0 4 A1JR0 C03 C5 C 0 1 N N N N N N 19.158 -3.444 -15.412 -0.865 -2.840 -0.256 C03 A1JR0 5 A1JR0 C04 C6 C 0 1 N N N N N N 20.087 -4.314 -14.491 -1.790 -1.966 -1.105 C04 A1JR0 6 A1JR0 C06 C7 C 0 1 N N N N N N 22.243 -5.131 -15.573 -2.154 0.331 -1.780 C06 A1JR0 7 A1JR0 C07 C8 C 0 1 N N N N N N 22.682 -6.441 -14.881 -3.179 0.587 -0.674 C07 A1JR0 8 A1JR0 C08 C9 C 0 1 N N N N N N 23.113 -7.639 -15.730 -4.207 1.610 -1.158 C08 A1JR0 9 A1JR0 C09 C10 C 0 1 N N N N N N 22.303 -7.946 -16.987 -5.217 1.863 -0.068 C09 A1JR0 10 A1JR0 C12 C11 C 0 1 N N N N N N 20.808 -8.505 -19.393 -7.042 2.278 1.885 C12 A1JR0 11 A1JR0 C14 C12 C 0 1 N N N N N N 22.777 -7.437 -18.333 -6.335 1.017 0.082 C14 A1JR0 12 A1JR0 C17 C13 C 0 1 N N N N N N 22.305 -3.914 -13.432 -0.038 -0.749 -2.251 C17 A1JR0 13 A1JR0 C18 C14 C 0 1 N N R N N N 22.123 -2.495 -12.786 0.868 0.473 -2.085 C18 A1JR0 14 A1JR0 C19 C15 C 0 1 N N S N N N 22.862 -1.305 -13.564 2.036 0.399 -3.087 C19 A1JR0 15 A1JR0 C21 C16 C 0 1 N N R N N N 23.383 -1.194 -11.269 2.763 1.042 -0.882 C21 A1JR0 16 A1JR0 C23 C17 C 0 1 Y N N N N N 25.473 -2.380 -10.421 3.358 -0.394 1.106 C23 A1JR0 17 A1JR0 C25 C18 C 0 1 Y N N N N N 25.524 -1.749 -8.321 5.200 0.530 1.784 C25 A1JR0 18 A1JR0 C26 C19 C 0 1 Y N N N N N 25.762 -1.498 -6.932 6.389 0.939 2.409 C26 A1JR0 19 A1JR0 C28 C20 C 0 1 Y N N N N N 23.823 -0.149 -6.943 6.582 2.636 0.857 C28 A1JR0 20 A1JR0 C35 C21 C 0 1 N N N N N N 16.791 -2.617 -16.103 -0.541 -5.114 0.677 C35 A1JR0 21 A1JR0 N01 N1 N 0 1 N N N N N N 17.119 -4.669 -14.853 -2.738 -4.076 0.723 N01 A1JR0 22 A1JR0 N05 N2 N 0 1 N N N N N N 21.588 -4.104 -14.692 -1.166 -0.652 -1.315 N05 A1JR0 23 A1JR0 N11 N3 N 0 1 N N N N N N 20.350 -8.986 -18.111 -5.989 3.106 1.764 N11 A1JR0 24 A1JR0 N13 N4 N 0 1 N N N N N N 22.033 -7.732 -19.428 -7.213 1.255 1.048 N13 A1JR0 25 A1JR0 N15 N5 N 0 1 N N N N N N 23.976 -6.667 -18.455 -6.516 -0.049 -0.769 N15 A1JR0 26 A1JR0 N22 N6 N 0 1 Y N N N N N 24.366 -1.524 -10.262 3.596 0.645 0.255 N22 A1JR0 27 A1JR0 N24 N7 N 0 1 Y N N N N N 26.189 -2.519 -9.300 4.301 -0.460 2.001 N24 A1JR0 28 A1JR0 N27 N8 N 0 1 Y N N N N N 24.894 -0.679 -6.259 7.038 1.988 1.913 N27 A1JR0 29 A1JR0 N29 N9 N 0 1 Y N N N N N 23.482 -0.315 -8.251 5.472 2.289 0.239 N29 A1JR0 30 A1JR0 N31 N10 N 0 1 N N N N N N 26.839 -2.027 -6.238 6.875 0.266 3.517 N31 A1JR0 31 A1JR0 O16 O1 O 0 1 N N N N N N 20.131 -8.785 -20.366 -7.860 2.473 2.768 O16 A1JR0 32 A1JR0 O32 O2 O 0 1 N N N N N N 22.721 -2.422 -11.492 1.437 0.483 -0.765 O32 A1JR0 33 A1JR0 O33 O3 O 0 1 N N N N N N 24.098 0.613 -12.546 4.316 1.249 -2.773 O33 A1JR0 34 A1JR0 O34 O4 O 0 1 N N N N N N 21.927 -0.298 -13.792 2.018 1.530 -3.961 O34 A1JR0 35 A1JR0 O36 O5 O 0 1 N N N N N N 17.339 -1.634 -16.654 0.474 -5.695 0.018 O36 A1JR0 36 A1JR0 O37 O6 O 0 1 N N N N N N 15.634 -3.023 -16.348 -0.685 -5.312 1.861 O37 A1JR0 37 A1JR0 H101 H1 H 0 0 N N N N N N 20.761 -9.047 -16.000 -4.216 3.567 0.689 H101 A1JR0 38 A1JR0 H201 H2 H 0 0 N N N N N N 24.956 -1.308 -12.825 3.677 -0.587 -2.026 H201 A1JR0 39 A1JR0 H021 H3 H 0 0 N N N N N N 17.563 -2.822 -14.062 -1.734 -4.652 -1.031 H021 A1JR0 40 A1JR0 H031 H4 H 0 0 N N N N N N 19.548 -2.416 -15.407 -0.711 -2.368 0.715 H031 A1JR0 41 A1JR0 H032 H5 H 0 0 N N N N N N 19.216 -3.854 -16.431 0.094 -2.952 -0.761 H032 A1JR0 42 A1JR0 H041 H6 H 0 0 N N N N N N 19.848 -4.075 -13.444 -1.959 -2.446 -2.069 H041 A1JR0 43 A1JR0 H042 H7 H 0 0 N N N N N N 19.863 -5.373 -14.686 -2.742 -1.838 -0.591 H042 A1JR0 44 A1JR0 H062 H8 H 0 0 N N N N N N 23.137 -4.670 -16.018 -2.662 -0.055 -2.664 H062 A1JR0 45 A1JR0 H061 H9 H 0 0 N N N N N N 21.531 -5.394 -16.369 -1.648 1.263 -2.030 H061 A1JR0 46 A1JR0 H071 H10 H 0 0 N N N N N N 23.532 -6.189 -14.230 -3.684 -0.346 -0.424 H071 A1JR0 47 A1JR0 H072 H11 H 0 0 N N N N N N 21.835 -6.775 -14.264 -2.671 0.972 0.210 H072 A1JR0 48 A1JR0 H081 H12 H 0 0 N N N N N N 24.152 -7.462 -16.044 -3.702 2.543 -1.408 H081 A1JR0 49 A1JR0 H082 H13 H 0 0 N N N N N N 23.071 -8.530 -15.086 -4.716 1.225 -2.042 H082 A1JR0 50 A1JR0 H172 H14 H 0 0 N N N N N N 21.945 -4.666 -12.715 -0.416 -0.784 -3.273 H172 A1JR0 51 A1JR0 H171 H15 H 0 0 N N N N N N 23.377 -4.071 -13.620 0.531 -1.655 -2.043 H171 A1JR0 52 A1JR0 H181 H16 H 0 0 N N N N N N 21.049 -2.263 -12.734 0.294 1.385 -2.248 H181 A1JR0 53 A1JR0 H191 H17 H 0 0 N N N N N N 23.291 -1.695 -14.499 1.990 -0.527 -3.660 H191 A1JR0 54 A1JR0 H211 H18 H 0 0 N N N N N N 22.695 -0.409 -10.922 2.716 2.128 -0.961 H211 A1JR0 55 A1JR0 H231 H19 H 0 0 N N N N N N 25.718 -2.872 -11.350 2.513 -1.062 1.046 H231 A1JR0 56 A1JR0 H281 H20 H 0 0 N N N N N N 23.165 0.483 -6.365 7.140 3.483 0.486 H281 A1JR0 57 A1JR0 H011 H21 H 0 0 N N N N N N 16.155 -4.609 -14.594 -3.212 -4.963 0.812 H011 A1JR0 58 A1JR0 H012 H22 H 0 0 N N N N N N 17.202 -5.167 -15.716 -2.550 -3.675 1.629 H012 A1JR0 59 A1JR0 H111 H25 H 0 0 N N N N N N 19.508 -9.521 -18.040 -5.882 3.845 2.383 H111 A1JR0 60 A1JR0 H151 H26 H 0 0 N N N N N N 24.272 -6.341 -19.353 -5.872 -0.220 -1.474 H151 A1JR0 61 A1JR0 H152 H27 H 0 0 N N N N N N 24.518 -6.454 -17.642 -7.286 -0.629 -0.663 H152 A1JR0 62 A1JR0 H312 H28 H 0 0 N N N N N N 26.815 -1.708 -5.291 6.392 -0.498 3.870 H312 A1JR0 63 A1JR0 H311 H29 H 0 0 N N N N N N 26.788 -3.026 -6.255 7.697 0.558 3.940 H311 A1JR0 64 A1JR0 H331 H30 H 0 0 N N N N N N 24.473 0.956 -13.349 4.621 0.950 -3.640 H331 A1JR0 65 A1JR0 H341 H31 H 0 0 N N N N N N 22.342 0.421 -14.253 2.764 1.564 -4.575 H341 A1JR0 66 A1JR0 H3 H32 H 0 1 N N N N N N 16.740 -1.249 -17.283 1.064 -6.262 0.533 H3 A1JR0 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JR0 C02 N01 SING N N 1 A1JR0 C04 C03 SING N N 2 A1JR0 N05 C04 SING N N 3 A1JR0 C07 C06 SING N N 4 A1JR0 C08 C07 SING N N 5 A1JR0 C09 C08 SING N N 6 A1JR0 C10 C09 DOUB N N 7 A1JR0 N11 C10 SING N N 8 A1JR0 C12 N11 SING N N 9 A1JR0 C14 N13 DOUB N N 10 A1JR0 N15 C14 SING N N 11 A1JR0 N13 C12 SING N N 12 A1JR0 O16 C12 DOUB N N 13 A1JR0 C06 N05 SING N N 14 A1JR0 C17 N05 SING N N 15 A1JR0 C18 C17 SING N N 16 A1JR0 C19 C18 SING N N 17 A1JR0 C23 N22 SING Y N 18 A1JR0 N24 C23 DOUB Y N 19 A1JR0 C25 N24 SING Y N 20 A1JR0 C26 C25 DOUB Y N 21 A1JR0 C28 N27 DOUB Y N 22 A1JR0 N29 C28 SING Y N 23 A1JR0 C30 N29 DOUB Y N 24 A1JR0 N27 C26 SING Y N 25 A1JR0 N31 C26 SING N N 26 A1JR0 N22 C21 SING N N 27 A1JR0 O32 C21 SING N N 28 A1JR0 C21 C20 SING N N 29 A1JR0 O33 C20 SING N N 30 A1JR0 C20 C19 SING N N 31 A1JR0 O34 C19 SING N N 32 A1JR0 C03 C02 SING N N 33 A1JR0 C35 C02 SING N N 34 A1JR0 O36 C35 SING N N 35 A1JR0 O37 C35 DOUB N N 36 A1JR0 C09 C14 SING N N 37 A1JR0 C18 O32 SING N N 38 A1JR0 N22 C30 SING Y N 39 A1JR0 C25 C30 SING Y N 40 A1JR0 C10 H101 SING N N 41 A1JR0 C20 H201 SING N N 42 A1JR0 C02 H021 SING N N 43 A1JR0 C03 H031 SING N N 44 A1JR0 C03 H032 SING N N 45 A1JR0 C04 H041 SING N N 46 A1JR0 C04 H042 SING N N 47 A1JR0 C06 H062 SING N N 48 A1JR0 C06 H061 SING N N 49 A1JR0 C07 H071 SING N N 50 A1JR0 C07 H072 SING N N 51 A1JR0 C08 H081 SING N N 52 A1JR0 C08 H082 SING N N 53 A1JR0 C17 H172 SING N N 54 A1JR0 C17 H171 SING N N 55 A1JR0 C18 H181 SING N N 56 A1JR0 C19 H191 SING N N 57 A1JR0 C21 H211 SING N N 58 A1JR0 C23 H231 SING N N 59 A1JR0 C28 H281 SING N N 60 A1JR0 N01 H011 SING N N 61 A1JR0 N01 H012 SING N N 62 A1JR0 N11 H111 SING N N 63 A1JR0 N15 H151 SING N N 64 A1JR0 N15 H152 SING N N 65 A1JR0 N31 H312 SING N N 66 A1JR0 N31 H311 SING N N 67 A1JR0 O33 H331 SING N N 68 A1JR0 O34 H341 SING N N 69 A1JR0 O36 H3 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JR0 InChI InChI 1.06 "InChI=1S/C21H30N10O6/c22-11(20(34)35)3-5-30(4-1-2-10-6-25-21(36)29-16(10)23)7-12-14(32)15(33)19(37-12)31-9-28-13-17(24)26-8-27-18(13)31/h6,8-9,11-12,14-15,19,32-33H,1-5,7,22H2,(H,34,35)(H2,24,26,27)(H3,23,25,29,36)/t11-,12+,14+,15+,19+/m0/s1" A1JR0 InChIKey InChI 1.06 GLZROOYWSDINLD-QTOWJTHWSA-N A1JR0 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(CCCC1=CNC(=O)N=C1N)C[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(O)=O" A1JR0 SMILES CACTVS 3.385 "N[CH](CCN(CCCC1=CNC(=O)N=C1N)C[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(O)=O" A1JR0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CCCC4=CNC(=O)N=C4N)CC[C@@H](C(=O)O)N)O)O)N" A1JR0 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCCC4=CNC(=O)N=C4N)CCC(C(=O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1JR0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-(4-azanyl-2-oxidanylidene-1~{H}-pyrimidin-5-yl)propyl]amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JR0 "Create component" 2025-10-13 PDBE A1JR0 "Initial release" 2026-10-28 RCSB #