data_A1JR5 # _chem_comp.id A1JR5 _chem_comp.name "~{N}-[1-[4-[(cyclohexylmethylamino)methyl]phenyl]piperidin-4-yl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H35 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-14 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 473.610 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JR5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SYY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JR5 C2 C1 C 0 1 N N N N N N -20.562 31.529 -2.006 4.573 -1.011 0.073 C2 A1JR5 1 A1JR5 C4 C2 C 0 1 N N N N N N -22.497 30.162 -1.365 2.184 -0.700 0.433 C4 A1JR5 2 A1JR5 C5 C3 C 0 1 N N N N N N -23.932 29.959 -1.824 1.340 0.218 1.323 C5 A1JR5 3 A1JR5 C6 C4 C 0 1 N N N N N N -23.975 29.195 -3.141 -0.100 -0.299 1.360 C6 A1JR5 4 A1JR5 C12 C5 C 0 1 N N N N N N -25.007 23.509 -6.060 -6.144 -1.717 0.042 C12 A1JR5 5 A1JR5 C21 C6 C 0 1 Y N N N N N -25.301 25.836 -5.132 -4.047 -1.087 -1.170 C21 A1JR5 6 A1JR5 C24 C7 C 0 1 N N N N N N -21.789 28.827 -1.210 1.565 -0.749 -0.967 C24 A1JR5 7 A1JR5 C25 C8 C 0 1 N N N N N N -19.966 32.382 -3.064 5.959 -0.483 -0.013 C25 A1JR5 8 A1JR5 C27 C9 C 0 1 N N N N N N -20.221 33.349 -5.146 7.421 1.314 0.109 C27 A1JR5 9 A1JR5 C28 C10 C 0 1 N N N N N N -20.958 33.567 -6.346 7.621 2.691 0.321 C28 A1JR5 10 A1JR5 C10 C11 C 0 1 Y N N N N N -23.250 24.701 -4.711 -3.981 -1.274 1.219 C10 A1JR5 11 A1JR5 C11 C12 C 0 1 Y N N N N N -24.511 24.707 -5.290 -4.683 -1.349 0.030 C11 A1JR5 12 A1JR5 C14 C13 C 0 1 N N N N N N -25.088 21.116 -5.486 -8.389 -0.819 0.174 C14 A1JR5 13 A1JR5 C15 C14 C 0 1 N N N N N N -25.320 20.837 -4.010 -9.199 0.473 0.298 C15 A1JR5 14 A1JR5 C16 C15 C 0 1 N N N N N N -25.409 19.336 -3.753 -10.684 0.132 0.438 C16 A1JR5 15 A1JR5 C17 C16 C 0 1 N N N N N N -26.635 18.958 -2.927 -11.494 1.424 0.562 C17 A1JR5 16 A1JR5 C18 C17 C 0 1 N N N N N N -27.913 19.365 -3.628 -11.284 2.280 -0.689 C18 A1JR5 17 A1JR5 C19 C18 C 0 1 N N N N N N -27.844 20.813 -4.076 -9.799 2.620 -0.830 C19 A1JR5 18 A1JR5 C20 C19 C 0 1 N N N N N N -26.601 21.504 -3.524 -8.988 1.329 -0.953 C20 A1JR5 19 A1JR5 C22 C20 C 0 1 Y N N N N N -24.847 26.930 -4.416 -2.708 -0.749 -1.184 C22 A1JR5 20 A1JR5 C23 C21 C 0 1 N N N N N N -22.644 27.691 -1.759 0.119 -1.237 -0.863 C23 A1JR5 21 A1JR5 C29 C22 C 0 1 N N N N N N -20.496 34.420 -7.295 8.881 3.205 0.248 C29 A1JR5 22 A1JR5 C30 C23 C 0 1 N N N N N N -19.283 35.105 -7.114 9.958 2.355 -0.037 C30 A1JR5 23 A1JR5 C31 C24 C 0 1 N N N N N N -18.567 34.914 -5.987 9.748 1.034 -0.238 C31 A1JR5 24 A1JR5 C33 C25 C 0 1 N N N N N N -18.778 33.024 -2.852 7.014 -1.339 -0.302 C33 A1JR5 25 A1JR5 C34 C26 C 0 1 N N N N N N -18.228 33.907 -3.817 8.311 -0.811 -0.377 C34 A1JR5 26 A1JR5 C8 C27 C 0 1 Y N N N N N -23.580 26.918 -3.836 -2.001 -0.668 0.009 C8 A1JR5 27 A1JR5 C9 C28 C 0 1 Y N N N N N -22.788 25.789 -3.993 -2.644 -0.927 1.212 C9 A1JR5 28 A1JR5 N13 N1 N 0 1 N N N N N N -24.257 22.297 -5.733 -6.955 -0.498 0.159 N13 A1JR5 29 A1JR5 N26 N2 N 0 1 N N N N N N -20.691 32.535 -4.220 6.191 0.813 0.181 N26 A1JR5 30 A1JR5 N3 N3 N 0 1 N N N N N N -21.770 31.024 -2.295 3.550 -0.178 0.348 N3 A1JR5 31 A1JR5 N32 N4 N 0 1 N N N N N N -19.021 34.055 -5.018 8.493 0.510 -0.167 N32 A1JR5 32 A1JR5 N7 N5 N 0 1 N N N N N N -23.130 27.996 -3.106 -0.647 -0.326 -0.002 N7 A1JR5 33 A1JR5 O1 O1 O 0 1 N N N N N N -19.981 31.324 -0.939 4.362 -2.194 -0.108 O1 A1JR5 34 A1JR5 O35 O2 O 0 1 N N N N N N -17.173 34.541 -3.721 9.261 -1.535 -0.628 O35 A1JR5 35 A1JR5 H4 H1 H 0 1 N N N N N N -22.522 30.649 -0.379 2.202 -1.703 0.859 H4 A1JR5 36 A1JR5 H5A H2 H 0 1 N N N N N N -24.478 29.389 -1.058 1.751 0.223 2.333 H5A A1JR5 37 A1JR5 H5B H3 H 0 1 N N N N N N -24.409 30.941 -1.961 1.354 1.230 0.918 H5B A1JR5 38 A1JR5 H6A H4 H 0 1 N N N N N N -25.013 28.893 -3.343 -0.114 -1.306 1.778 H6A A1JR5 39 A1JR5 H6B H5 H 0 1 N N N N N N -23.622 29.855 -3.947 -0.706 0.360 1.982 H6B A1JR5 40 A1JR5 H12A H6 H 0 0 N N N N N N -26.068 23.346 -5.818 -6.396 -2.233 -0.885 H12A A1JR5 41 A1JR5 H12B H7 H 0 0 N N N N N N -24.903 23.711 -7.136 -6.347 -2.372 0.889 H12B A1JR5 42 A1JR5 H21 H8 H 0 1 N N N N N N -26.286 25.862 -5.575 -4.597 -1.151 -2.097 H21 A1JR5 43 A1JR5 H24A H9 H 0 0 N N N N N N -21.591 28.646 -0.143 1.582 0.248 -1.407 H24A A1JR5 44 A1JR5 H24B H10 H 0 0 N N N N N N -20.836 28.859 -1.759 2.137 -1.434 -1.593 H24B A1JR5 45 A1JR5 H28 H11 H 0 1 N N N N N N -21.893 33.049 -6.502 6.782 3.336 0.539 H28 A1JR5 46 A1JR5 H10 H12 H 0 1 N N N N N N -22.619 23.832 -4.823 -4.480 -1.480 2.154 H10 A1JR5 47 A1JR5 H14A H13 H 0 0 N N N N N N -26.064 21.270 -5.969 -8.607 -1.467 1.023 H14A A1JR5 48 A1JR5 H14B H14 H 0 0 N N N N N N -24.592 20.241 -5.932 -8.656 -1.329 -0.751 H14B A1JR5 49 A1JR5 H15 H15 H 0 1 N N N N N N -24.473 21.242 -3.437 -8.868 1.027 1.176 H15 A1JR5 50 A1JR5 H16A H16 H 0 0 N N N N N N -25.460 18.815 -4.720 -11.014 -0.422 -0.440 H16A A1JR5 51 A1JR5 H16B H17 H 0 0 N N N N N N -24.506 19.016 -3.212 -10.834 -0.477 1.329 H16B A1JR5 52 A1JR5 H17A H18 H 0 0 N N N N N N -26.642 17.869 -2.772 -12.552 1.181 0.662 H17A A1JR5 53 A1JR5 H17B H19 H 0 0 N N N N N N -26.582 19.466 -1.953 -11.164 1.978 1.441 H17B A1JR5 54 A1JR5 H18A H20 H 0 0 N N N N N N -28.062 18.722 -4.508 -11.614 1.726 -1.568 H18A A1JR5 55 A1JR5 H18B H21 H 0 0 N N N N N N -28.759 19.242 -2.936 -11.861 3.200 -0.601 H18B A1JR5 56 A1JR5 H19A H22 H 0 0 N N N N N N -27.815 20.847 -5.175 -9.649 3.230 -1.721 H19A A1JR5 57 A1JR5 H19B H23 H 0 0 N N N N N N -28.738 21.343 -3.716 -9.468 3.174 0.049 H19B A1JR5 58 A1JR5 H20A H24 H 0 0 N N N N N N -26.602 22.554 -3.852 -7.931 1.571 -1.054 H20A A1JR5 59 A1JR5 H20B H25 H 0 0 N N N N N N -26.629 21.463 -2.425 -9.319 0.775 -1.832 H20B A1JR5 60 A1JR5 H22 H26 H 0 1 N N N N N N -25.479 27.799 -4.306 -2.211 -0.549 -2.122 H22 A1JR5 61 A1JR5 H23A H27 H 0 0 N N N N N N -23.506 27.537 -1.093 -0.329 -1.260 -1.857 H23A A1JR5 62 A1JR5 H23B H28 H 0 0 N N N N N N -22.040 26.773 -1.795 0.103 -2.240 -0.435 H23B A1JR5 63 A1JR5 H29 H29 H 0 1 N N N N N N -21.067 34.574 -8.199 9.048 4.260 0.408 H29 A1JR5 64 A1JR5 H30 H30 H 0 1 N N N N N N -18.925 35.783 -7.875 10.960 2.756 -0.097 H30 A1JR5 65 A1JR5 H31 H31 H 0 1 N N N N N N -17.634 35.439 -5.847 10.585 0.388 -0.456 H31 A1JR5 66 A1JR5 H33 H32 H 0 1 N N N N N N -18.245 32.855 -1.928 6.839 -2.392 -0.465 H33 A1JR5 67 A1JR5 H9 H33 H 0 1 N N N N N N -21.803 25.760 -3.551 -2.097 -0.864 2.142 H9 A1JR5 68 A1JR5 H13 H34 H 0 1 N N N N N N -23.644 22.093 -6.497 -6.695 0.032 0.978 H13 A1JR5 69 A1JR5 H3 H36 H 0 1 N N N N N N -22.188 31.245 -3.176 3.718 0.766 0.489 H3 A1JR5 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JR5 O1 C2 DOUB N N 1 A1JR5 C2 N3 SING N N 2 A1JR5 N3 C4 SING N N 3 A1JR5 C4 C5 SING N N 4 A1JR5 C5 C6 SING N N 5 A1JR5 C6 N7 SING N N 6 A1JR5 N7 C8 SING N N 7 A1JR5 C8 C9 DOUB Y N 8 A1JR5 C9 C10 SING Y N 9 A1JR5 C10 C11 DOUB Y N 10 A1JR5 C11 C12 SING N N 11 A1JR5 C12 N13 SING N N 12 A1JR5 N13 C14 SING N N 13 A1JR5 C14 C15 SING N N 14 A1JR5 C15 C16 SING N N 15 A1JR5 C16 C17 SING N N 16 A1JR5 C17 C18 SING N N 17 A1JR5 C18 C19 SING N N 18 A1JR5 C19 C20 SING N N 19 A1JR5 C11 C21 SING Y N 20 A1JR5 C21 C22 DOUB Y N 21 A1JR5 N7 C23 SING N N 22 A1JR5 C23 C24 SING N N 23 A1JR5 C2 C25 SING N N 24 A1JR5 C25 N26 SING N N 25 A1JR5 N26 C27 DOUB N N 26 A1JR5 C27 C28 SING N N 27 A1JR5 C28 C29 DOUB N N 28 A1JR5 C29 C30 SING N N 29 A1JR5 C30 C31 DOUB N N 30 A1JR5 C31 N32 SING N N 31 A1JR5 C25 C33 DOUB N N 32 A1JR5 C33 C34 SING N N 33 A1JR5 C34 O35 DOUB N N 34 A1JR5 C24 C4 SING N N 35 A1JR5 C22 C8 SING Y N 36 A1JR5 C20 C15 SING N N 37 A1JR5 N32 C27 SING N N 38 A1JR5 C34 N32 SING N N 39 A1JR5 C4 H4 SING N N 40 A1JR5 C5 H5A SING N N 41 A1JR5 C5 H5B SING N N 42 A1JR5 C6 H6A SING N N 43 A1JR5 C6 H6B SING N N 44 A1JR5 C12 H12A SING N N 45 A1JR5 C12 H12B SING N N 46 A1JR5 C21 H21 SING N N 47 A1JR5 C24 H24A SING N N 48 A1JR5 C24 H24B SING N N 49 A1JR5 C28 H28 SING N N 50 A1JR5 C10 H10 SING N N 51 A1JR5 C14 H14A SING N N 52 A1JR5 C14 H14B SING N N 53 A1JR5 C15 H15 SING N N 54 A1JR5 C16 H16A SING N N 55 A1JR5 C16 H16B SING N N 56 A1JR5 C17 H17A SING N N 57 A1JR5 C17 H17B SING N N 58 A1JR5 C18 H18A SING N N 59 A1JR5 C18 H18B SING N N 60 A1JR5 C19 H19A SING N N 61 A1JR5 C19 H19B SING N N 62 A1JR5 C20 H20A SING N N 63 A1JR5 C20 H20B SING N N 64 A1JR5 C22 H22 SING N N 65 A1JR5 C23 H23A SING N N 66 A1JR5 C23 H23B SING N N 67 A1JR5 C29 H29 SING N N 68 A1JR5 C30 H30 SING N N 69 A1JR5 C31 H31 SING N N 70 A1JR5 C33 H33 SING N N 71 A1JR5 C9 H9 SING N N 72 A1JR5 N13 H13 SING N N 73 A1JR5 N3 H3 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JR5 InChI InChI 1.06 "InChI=1S/C28H35N5O2/c34-27-18-25(31-26-8-4-5-15-33(26)27)28(35)30-23-13-16-32(17-14-23)24-11-9-22(10-12-24)20-29-19-21-6-2-1-3-7-21/h4-5,8-12,15,18,21,23,29H,1-3,6-7,13-14,16-17,19-20H2,(H,30,35)" A1JR5 InChIKey InChI 1.06 BVGVTJQTHDSYIV-UHFFFAOYSA-N A1JR5 SMILES_CANONICAL CACTVS 3.385 "O=C(NC1CCN(CC1)c2ccc(CNCC3CCCCC3)cc2)C4=CC(=O)N5C=CC=CC5=N4" A1JR5 SMILES CACTVS 3.385 "O=C(NC1CCN(CC1)c2ccc(CNCC3CCCCC3)cc2)C4=CC(=O)N5C=CC=CC5=N4" A1JR5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CNCC2CCCCC2)N3CCC(CC3)NC(=O)C4=CC(=O)N5C=CC=CC5=N4" A1JR5 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CNCC2CCCCC2)N3CCC(CC3)NC(=O)C4=CC(=O)N5C=CC=CC5=N4" # _pdbx_chem_comp_identifier.comp_id A1JR5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[1-[4-[(cyclohexylmethylamino)methyl]phenyl]piperidin-4-yl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JR5 "Create component" 2025-10-14 PDBE A1JR5 "Initial release" 2026-11-04 RCSB #