data_A1JR6 # _chem_comp.id A1JR6 _chem_comp.name "~{N}-[1-[4-[(cyclobutylmethylamino)methyl]phenyl]piperidin-4-yl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H31 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-14 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 445.557 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JR6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SYZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JR6 O1 O1 O 0 1 N N N N N N -20.555 32.524 -0.658 -4.435 -2.858 0.428 O1 A1JR6 1 A1JR6 C2 C1 C 0 1 N N N N N N -21.030 32.253 -1.758 -3.918 -1.847 -0.007 C2 A1JR6 2 A1JR6 C4 C2 C 0 1 N N N N N N -22.308 30.446 -2.926 -1.977 -3.179 -0.635 C4 A1JR6 3 A1JR6 C5 C3 C 0 1 N N N N N N -21.866 29.093 -2.397 -0.969 -3.134 -1.786 C5 A1JR6 4 A1JR6 C6 C4 C 0 1 N N N N N N -22.113 28.002 -3.428 0.066 -2.041 -1.510 C6 A1JR6 5 A1JR6 C8 C5 C 0 1 Y N N N N N -24.028 26.855 -4.366 1.795 -1.421 -0.026 C8 A1JR6 6 A1JR6 C9 C6 C 0 1 Y N N N N N -25.356 26.782 -4.773 2.573 -1.518 1.121 C9 A1JR6 7 A1JR6 C10 C7 C 0 1 Y N N N N N -25.893 25.581 -5.204 3.606 -0.626 1.331 C10 A1JR6 8 A1JR6 C11 C8 C 0 1 Y N N N N N -25.127 24.426 -5.241 3.865 0.365 0.401 C11 A1JR6 9 A1JR6 C12 C9 C 0 1 N N N N N N -25.723 23.116 -5.692 4.993 1.337 0.633 C12 A1JR6 10 A1JR6 C14 C10 C 0 1 N N N N N N -24.542 21.201 -4.719 7.353 1.726 0.253 C14 A1JR6 11 A1JR6 C15 C11 C 0 1 N N N N N N -24.106 19.797 -5.103 8.619 1.137 -0.371 C15 A1JR6 12 A1JR6 C16 C12 C 0 1 N N N N N N -23.176 19.624 -6.315 9.831 2.082 -0.315 C16 A1JR6 13 A1JR6 C17 C13 C 0 1 N N N N N N -22.432 18.528 -5.537 10.682 0.845 0.015 C17 A1JR6 14 A1JR6 C18 C14 C 0 1 N N N N N N -23.046 19.090 -4.241 9.399 0.209 0.577 C18 A1JR6 15 A1JR6 C19 C15 C 0 1 Y N N N N N -23.803 24.503 -4.835 3.093 0.465 -0.741 C19 A1JR6 16 A1JR6 C20 C16 C 0 1 Y N N N N N -23.257 25.698 -4.402 2.059 -0.425 -0.957 C20 A1JR6 17 A1JR6 C21 C17 C 0 1 N N N N N N -24.331 28.992 -3.213 -0.187 -2.327 0.883 C21 A1JR6 18 A1JR6 C22 C18 C 0 1 N N N N N N -23.774 30.406 -3.332 -1.230 -3.428 0.678 C22 A1JR6 19 A1JR6 C23 C19 C 0 1 N N N N N N -20.406 32.778 -3.002 -4.639 -0.551 0.076 C23 A1JR6 20 A1JR6 C25 C20 C 0 1 N N N N N N -20.732 33.689 -5.109 -4.697 1.731 -0.337 C25 A1JR6 21 A1JR6 C26 C21 C 0 1 N N N N N N -21.545 33.954 -6.240 -4.062 2.877 -0.853 C26 A1JR6 22 A1JR6 C27 C22 C 0 1 N N N N N N -21.069 34.705 -7.267 -4.699 4.081 -0.790 C27 A1JR6 23 A1JR6 C28 C23 C 0 1 N N N N N N -19.770 35.228 -7.230 -5.974 4.159 -0.214 C28 A1JR6 24 A1JR6 C29 C24 C 0 1 N N N N N N -18.979 34.987 -6.167 -6.569 3.047 0.275 C29 A1JR6 25 A1JR6 C31 C25 C 0 1 N N N N N N -19.129 33.253 -2.942 -5.901 -0.491 0.655 C31 A1JR6 26 A1JR6 C32 C26 C 0 1 N N N N N N -18.567 34.026 -3.996 -6.556 0.747 0.720 C32 A1JR6 27 A1JR6 N13 N1 N 0 1 N N N N N N -24.716 22.071 -5.887 6.229 0.803 0.046 N13 A1JR6 28 A1JR6 N24 N2 N 0 1 N N N N N N -21.214 32.977 -4.098 -4.075 0.557 -0.399 N24 A1JR6 29 A1JR6 N3 N3 N 0 1 N N N N N N -22.102 31.453 -1.889 -2.690 -1.901 -0.558 N3 A1JR6 30 A1JR6 N30 N4 N 0 1 N N N N N N -19.448 34.225 -5.113 -5.942 1.840 0.218 N30 A1JR6 31 A1JR6 N7 N5 N 0 1 N N N N N N -23.482 28.050 -3.946 0.754 -2.326 -0.244 N7 A1JR6 32 A1JR6 O33 O2 O 0 1 N N N N N N -17.448 34.533 -4.021 -7.666 0.836 1.221 O33 A1JR6 33 A1JR6 H4 H1 H 0 1 N N N N N N -21.703 30.697 -3.809 -2.691 -3.985 -0.806 H4 A1JR6 34 A1JR6 H5A H2 H 0 1 N N N N N N -20.792 29.131 -2.163 -0.467 -4.098 -1.868 H5A A1JR6 35 A1JR6 H5B H3 H 0 1 N N N N N N -22.433 28.861 -1.483 -1.490 -2.914 -2.718 H5B A1JR6 36 A1JR6 H6A H4 H 0 1 N N N N N N -21.410 28.135 -4.264 0.794 -2.016 -2.321 H6A A1JR6 37 A1JR6 H6B H5 H 0 1 N N N N N N -21.943 27.022 -2.958 -0.435 -1.076 -1.442 H6B A1JR6 38 A1JR6 H9 H6 H 0 1 N N N N N N -25.973 27.668 -4.753 2.371 -2.291 1.848 H9 A1JR6 39 A1JR6 H10 H7 H 0 1 N N N N N N -26.926 25.543 -5.517 4.211 -0.701 2.222 H10 A1JR6 40 A1JR6 H12A H8 H 0 0 N N N N N N -26.440 22.775 -4.930 4.752 2.292 0.166 H12A A1JR6 41 A1JR6 H12B H9 H 0 0 N N N N N N -26.249 23.279 -6.644 5.133 1.482 1.705 H12B A1JR6 42 A1JR6 H14A H10 H 0 0 N N N N N N -23.778 21.641 -4.061 7.509 1.874 1.322 H14A A1JR6 43 A1JR6 H14B H11 H 0 0 N N N N N N -25.498 21.139 -4.179 7.128 2.683 -0.217 H14B A1JR6 44 A1JR6 H15 H12 H 0 1 N N N N N N -24.987 19.148 -5.215 8.445 0.708 -1.357 H15 A1JR6 45 A1JR6 H16A H13 H 0 0 N N N N N N -23.679 19.272 -7.228 10.075 2.536 -1.276 H16A A1JR6 46 A1JR6 H16B H14 H 0 0 N N N N N N -22.566 20.509 -6.550 9.781 2.808 0.496 H16B A1JR6 47 A1JR6 H17A H15 H 0 0 N N N N N N -22.746 17.503 -5.782 11.072 0.335 -0.865 H17A A1JR6 48 A1JR6 H17B H16 H 0 0 N N N N N N -21.335 18.598 -5.589 11.445 1.029 0.772 H17B A1JR6 49 A1JR6 H18A H17 H 0 0 N N N N N N -23.449 18.326 -3.559 9.231 0.423 1.632 H18A A1JR6 50 A1JR6 H18B H18 H 0 0 N N N N N N -22.386 19.770 -3.682 9.294 -0.849 0.336 H18B A1JR6 51 A1JR6 H19 H19 H 0 1 N N N N N N -23.188 23.615 -4.857 3.298 1.239 -1.465 H19 A1JR6 52 A1JR6 H20 H20 H 0 1 N N N N N N -22.224 25.733 -4.089 1.455 -0.346 -1.850 H20 A1JR6 53 A1JR6 H21A H21 H 0 0 N N N N N N -25.348 28.966 -3.631 -0.687 -1.360 0.940 H21A A1JR6 54 A1JR6 H21B H22 H 0 0 N N N N N N -24.363 28.702 -2.152 0.357 -2.510 1.810 H21B A1JR6 55 A1JR6 H22A H23 H 0 0 N N N N N N -23.869 30.744 -4.374 -1.937 -3.419 1.507 H22A A1JR6 56 A1JR6 H22B H24 H 0 0 N N N N N N -24.348 31.076 -2.675 -0.732 -4.397 0.635 H22B A1JR6 57 A1JR6 H26 H25 H 0 1 N N N N N N -22.548 33.557 -6.285 -3.079 2.804 -1.293 H26 A1JR6 58 A1JR6 H27 H26 H 0 1 N N N N N N -21.699 34.901 -8.122 -4.223 4.968 -1.181 H27 A1JR6 59 A1JR6 H28 H27 H 0 1 N N N N N N -19.403 35.824 -8.053 -6.484 5.110 -0.162 H28 A1JR6 60 A1JR6 H29 H28 H 0 1 N N N N N N -17.977 35.389 -6.138 -7.552 3.118 0.717 H29 A1JR6 61 A1JR6 H31 H29 H 0 1 N N N N N N -18.528 33.037 -2.071 -6.369 -1.382 1.048 H31 A1JR6 62 A1JR6 H13 H30 H 0 1 N N N N N N -24.993 21.506 -6.664 6.440 -0.112 0.416 H13 A1JR6 63 A1JR6 H3 H32 H 0 1 N N N N N N -22.829 31.558 -1.210 -2.278 -1.094 -0.905 H3 A1JR6 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JR6 O1 C2 DOUB N N 1 A1JR6 C2 N3 SING N N 2 A1JR6 N3 C4 SING N N 3 A1JR6 C4 C5 SING N N 4 A1JR6 C5 C6 SING N N 5 A1JR6 C6 N7 SING N N 6 A1JR6 N7 C8 SING N N 7 A1JR6 C8 C9 DOUB Y N 8 A1JR6 C9 C10 SING Y N 9 A1JR6 C10 C11 DOUB Y N 10 A1JR6 C11 C12 SING N N 11 A1JR6 C12 N13 SING N N 12 A1JR6 N13 C14 SING N N 13 A1JR6 C14 C15 SING N N 14 A1JR6 C15 C16 SING N N 15 A1JR6 C16 C17 SING N N 16 A1JR6 C17 C18 SING N N 17 A1JR6 C11 C19 SING Y N 18 A1JR6 C19 C20 DOUB Y N 19 A1JR6 N7 C21 SING N N 20 A1JR6 C21 C22 SING N N 21 A1JR6 C2 C23 SING N N 22 A1JR6 C23 N24 SING N N 23 A1JR6 N24 C25 DOUB N N 24 A1JR6 C25 C26 SING N N 25 A1JR6 C26 C27 DOUB N N 26 A1JR6 C27 C28 SING N N 27 A1JR6 C28 C29 DOUB N N 28 A1JR6 C29 N30 SING N N 29 A1JR6 C23 C31 DOUB N N 30 A1JR6 C31 C32 SING N N 31 A1JR6 C32 O33 DOUB N N 32 A1JR6 C22 C4 SING N N 33 A1JR6 C20 C8 SING Y N 34 A1JR6 C18 C15 SING N N 35 A1JR6 N30 C25 SING N N 36 A1JR6 C32 N30 SING N N 37 A1JR6 C4 H4 SING N N 38 A1JR6 C5 H5A SING N N 39 A1JR6 C5 H5B SING N N 40 A1JR6 C6 H6A SING N N 41 A1JR6 C6 H6B SING N N 42 A1JR6 C9 H9 SING N N 43 A1JR6 C10 H10 SING N N 44 A1JR6 C12 H12A SING N N 45 A1JR6 C12 H12B SING N N 46 A1JR6 C14 H14A SING N N 47 A1JR6 C14 H14B SING N N 48 A1JR6 C15 H15 SING N N 49 A1JR6 C16 H16A SING N N 50 A1JR6 C16 H16B SING N N 51 A1JR6 C17 H17A SING N N 52 A1JR6 C17 H17B SING N N 53 A1JR6 C18 H18A SING N N 54 A1JR6 C18 H18B SING N N 55 A1JR6 C19 H19 SING N N 56 A1JR6 C20 H20 SING N N 57 A1JR6 C21 H21A SING N N 58 A1JR6 C21 H21B SING N N 59 A1JR6 C22 H22A SING N N 60 A1JR6 C22 H22B SING N N 61 A1JR6 C26 H26 SING N N 62 A1JR6 C27 H27 SING N N 63 A1JR6 C28 H28 SING N N 64 A1JR6 C29 H29 SING N N 65 A1JR6 C31 H31 SING N N 66 A1JR6 N13 H13 SING N N 67 A1JR6 N3 H3 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JR6 InChI InChI 1.06 "InChI=1S/C26H31N5O2/c32-25-16-23(29-24-6-1-2-13-31(24)25)26(33)28-21-11-14-30(15-12-21)22-9-7-20(8-10-22)18-27-17-19-4-3-5-19/h1-2,6-10,13,16,19,21,27H,3-5,11-12,14-15,17-18H2,(H,28,33)" A1JR6 InChIKey InChI 1.06 YUNLFVMCCLHMRC-UHFFFAOYSA-N A1JR6 SMILES_CANONICAL CACTVS 3.385 "O=C(NC1CCN(CC1)c2ccc(CNCC3CCC3)cc2)C4=CC(=O)N5C=CC=CC5=N4" A1JR6 SMILES CACTVS 3.385 "O=C(NC1CCN(CC1)c2ccc(CNCC3CCC3)cc2)C4=CC(=O)N5C=CC=CC5=N4" A1JR6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CNCC2CCC2)N3CCC(CC3)NC(=O)C4=CC(=O)N5C=CC=CC5=N4" A1JR6 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CNCC2CCC2)N3CCC(CC3)NC(=O)C4=CC(=O)N5C=CC=CC5=N4" # _pdbx_chem_comp_identifier.comp_id A1JR6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[1-[4-[(cyclobutylmethylamino)methyl]phenyl]piperidin-4-yl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JR6 "Create component" 2025-10-14 PDBE A1JR6 "Initial release" 2026-11-04 RCSB #