data_A1JR7 # _chem_comp.id A1JR7 _chem_comp.name "~{N}-[1-[4-[(4,4-dimethylpiperidin-1-yl)methyl]phenyl]piperidin-4-yl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H35 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-14 _chem_comp.pdbx_modified_date 2026-10-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 473.610 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JR7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SZ0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JR7 O1 O1 O 0 1 N N N N N N -20.453 31.929 -1.006 3.402 1.917 0.519 O1 A1JR7 1 A1JR7 N7 N1 N 0 1 N N N N N N -23.402 28.195 -3.221 -0.875 -1.290 0.388 N7 A1JR7 2 A1JR7 C4 C1 C 0 1 N N N N N N -22.856 30.510 -1.592 1.682 -0.055 -0.135 C4 A1JR7 3 A1JR7 C5 C2 C 0 1 N N N N N N -24.259 30.263 -2.137 1.044 -1.042 -1.115 C5 A1JR7 4 A1JR7 C6 C3 C 0 1 N N N N N N -24.216 29.404 -3.399 -0.480 -0.966 -0.989 C6 A1JR7 5 A1JR7 C21 C4 C 0 1 Y N N N N N -25.196 25.886 -5.491 -4.366 -2.279 -0.191 C21 A1JR7 6 A1JR7 C22 C5 C 0 1 Y N N N N N -24.892 27.013 -4.743 -2.992 -2.214 -0.311 C22 A1JR7 7 A1JR7 C23 C6 C 0 1 N N N N N N -22.963 28.009 -1.834 -0.312 -0.327 1.342 C23 A1JR7 8 A1JR7 C31 C7 C 0 1 N N N N N N -18.847 35.179 -6.270 9.458 0.410 -0.191 C31 A1JR7 9 A1JR7 C33 C8 C 0 1 N N N N N N -19.082 33.392 -3.063 6.193 1.850 0.424 C33 A1JR7 10 A1JR7 C34 C9 C 0 1 N N N N N N -18.509 34.222 -4.076 7.586 1.719 0.331 C34 A1JR7 11 A1JR7 C10 C10 C 0 1 Y N N N N N -23.231 24.809 -4.682 -4.299 -0.632 1.549 C10 A1JR7 12 A1JR7 C11 C11 C 0 1 Y N N N N N -24.369 24.770 -5.472 -5.019 -1.490 0.738 C11 A1JR7 13 A1JR7 C12 C12 C 0 1 N N N N N N -24.675 23.562 -6.313 -6.519 -1.563 0.866 C12 A1JR7 14 A1JR7 C14 C13 C 0 1 N N N N N N -25.209 21.141 -6.355 -6.812 0.789 0.373 C14 A1JR7 15 A1JR7 C15 C14 C 0 1 N N N N N N -25.533 19.924 -5.506 -7.347 1.774 -0.668 C15 A1JR7 16 A1JR7 C16 C15 C 0 1 N N N N N N -26.807 20.081 -4.664 -8.863 1.604 -0.794 C16 A1JR7 17 A1JR7 C17 C16 C 0 1 N N N N N N -26.926 18.926 -3.668 -9.396 2.544 -1.877 C17 A1JR7 18 A1JR7 C18 C17 C 0 1 N N N N N N -28.037 20.073 -5.575 -9.528 1.937 0.544 C18 A1JR7 19 A1JR7 C19 C18 C 0 1 N N N N N N -26.715 21.412 -3.904 -9.177 0.154 -1.175 C19 A1JR7 20 A1JR7 C2 C19 C 0 1 N N N N N N -20.941 31.991 -2.142 3.915 0.883 0.140 C2 A1JR7 21 A1JR7 C20 C20 C 0 1 N N N N N N -26.352 22.608 -4.763 -8.589 -0.784 -0.119 C20 A1JR7 22 A1JR7 C24 C21 C 0 1 N N N N N N -22.129 29.193 -1.350 1.216 -0.384 1.286 C24 A1JR7 23 A1JR7 C25 C22 C 0 1 N N N N N N -20.312 32.799 -3.224 5.394 0.772 0.063 C25 A1JR7 24 A1JR7 C27 C23 C 0 1 N N N N N N -20.561 33.729 -5.347 7.279 -0.488 -0.430 C27 A1JR7 25 A1JR7 C28 C24 C 0 1 N N N N N N -21.321 33.953 -6.530 7.831 -1.704 -0.875 C28 A1JR7 26 A1JR7 C29 C25 C 0 1 N N N N N N -20.837 34.756 -7.513 9.185 -1.835 -0.956 C29 A1JR7 27 A1JR7 C30 C26 C 0 1 N N N N N N -19.583 35.378 -7.382 10.007 -0.753 -0.610 C30 A1JR7 28 A1JR7 C8 C27 C 0 1 Y N N N N N -23.743 27.050 -3.950 -2.265 -1.358 0.506 C8 A1JR7 29 A1JR7 C9 C28 C 0 1 Y N N N N N -22.919 25.929 -3.931 -2.923 -0.570 1.442 C9 A1JR7 30 A1JR7 N13 N2 N 0 1 N N N N N N -25.073 22.358 -5.495 -7.136 -0.583 -0.038 N13 A1JR7 31 A1JR7 N26 N3 N 0 1 N N N N N N -21.052 32.964 -4.380 5.957 -0.361 -0.352 N26 A1JR7 32 A1JR7 N3 N4 N 0 1 N N N N N N -22.086 31.365 -2.498 3.141 -0.164 -0.211 N3 A1JR7 33 A1JR7 N32 N5 N 0 1 N N N N N N -19.326 34.365 -5.257 8.107 0.549 -0.096 N32 A1JR7 34 A1JR7 O35 O2 O 0 1 N N N N N N -17.429 34.806 -4.030 8.317 2.649 0.631 O35 A1JR7 35 A1JR7 H4 H1 H 0 1 N N N N N N -22.956 31.023 -0.624 1.379 0.961 -0.391 H4 A1JR7 36 A1JR7 H5A H2 H 0 1 N N N N N N -24.856 29.746 -1.371 1.338 -0.786 -2.133 H5A A1JR7 37 A1JR7 H5B H3 H 0 1 N N N N N N -24.727 31.229 -2.376 1.378 -2.053 -0.882 H5B A1JR7 38 A1JR7 H6A H4 H 0 1 N N N N N N -25.242 29.105 -3.659 -0.937 -1.678 -1.676 H6A A1JR7 39 A1JR7 H6B H5 H 0 1 N N N N N N -23.789 30.000 -4.219 -0.814 0.042 -1.235 H6B A1JR7 40 A1JR7 H21 H6 H 0 1 N N N N N N -26.089 25.876 -6.098 -4.933 -2.944 -0.826 H21 A1JR7 41 A1JR7 H22 H7 H 0 1 N N N N N N -25.549 27.869 -4.774 -2.484 -2.828 -1.039 H22 A1JR7 42 A1JR7 H23A H8 H 0 0 N N N N N N -23.848 27.907 -1.189 -0.647 0.678 1.085 H23A A1JR7 43 A1JR7 H23B H9 H 0 0 N N N N N N -22.356 27.094 -1.770 -0.648 -0.575 2.349 H23B A1JR7 44 A1JR7 H31 H10 H 0 1 N N N N N N -17.883 35.655 -6.169 10.099 1.237 0.076 H31 A1JR7 45 A1JR7 H33 H11 H 0 1 N N N N N N -18.534 33.226 -2.147 5.749 2.775 0.762 H33 A1JR7 46 A1JR7 H10 H12 H 0 1 N N N N N N -22.576 23.951 -4.652 -4.812 -0.017 2.274 H10 A1JR7 47 A1JR7 H12A H13 H 0 0 N N N N N N -25.501 23.810 -6.995 -6.857 -2.565 0.602 H12A A1JR7 48 A1JR7 H12B H14 H 0 0 N N N N N N -23.780 23.307 -6.899 -6.807 -1.342 1.894 H12B A1JR7 49 A1JR7 H14A H15 H 0 0 N N N N N N -26.018 21.301 -7.083 -5.731 0.898 0.455 H14A A1JR7 50 A1JR7 H14B H16 H 0 0 N N N N N N -24.263 20.968 -6.890 -7.272 0.997 1.340 H14B A1JR7 51 A1JR7 H15A H17 H 0 0 N N N N N N -25.662 19.059 -6.173 -7.120 2.793 -0.355 H15A A1JR7 52 A1JR7 H15B H18 H 0 0 N N N N N N -24.688 19.740 -4.826 -6.878 1.576 -1.632 H15B A1JR7 53 A1JR7 H17A H19 H 0 0 N N N N N N -27.842 19.049 -3.071 -8.924 2.305 -2.830 H17A A1JR7 54 A1JR7 H17B H20 H 0 0 N N N N N N -26.971 17.973 -4.216 -10.475 2.422 -1.965 H17B A1JR7 55 A1JR7 H17C H21 H 0 0 N N N N N N -26.051 18.925 -3.001 -9.168 3.575 -1.607 H17C A1JR7 56 A1JR7 H18A H22 H 0 0 N N N N N N -28.946 20.186 -4.966 -9.300 2.967 0.816 H18A A1JR7 57 A1JR7 H18B H23 H 0 0 N N N N N N -27.969 20.906 -6.290 -10.607 1.815 0.454 H18B A1JR7 58 A1JR7 H18C H24 H 0 0 N N N N N N -28.080 19.121 -6.125 -9.149 1.265 1.315 H18C A1JR7 59 A1JR7 H19A H25 H 0 0 N N N N N N -27.692 21.609 -3.438 -10.257 0.016 -1.224 H19A A1JR7 60 A1JR7 H19B H26 H 0 0 N N N N N N -25.949 21.307 -3.121 -8.736 -0.069 -2.146 H19B A1JR7 61 A1JR7 H20A H27 H 0 0 N N N N N N -27.157 22.788 -5.491 -9.040 -0.569 0.850 H20A A1JR7 62 A1JR7 H20B H28 H 0 0 N N N N N N -26.234 23.493 -4.120 -8.797 -1.818 -0.395 H20B A1JR7 63 A1JR7 H24A H29 H 0 0 N N N N N N -21.937 29.081 -0.273 1.553 -1.385 1.556 H24A A1JR7 64 A1JR7 H24B H30 H 0 0 N N N N N N -21.173 29.205 -1.893 1.634 0.342 1.984 H24B A1JR7 65 A1JR7 H28 H31 H 0 1 N N N N N N -22.286 33.483 -6.646 7.187 -2.527 -1.149 H28 A1JR7 66 A1JR7 H29 H32 H 0 1 N N N N N N -21.423 34.919 -8.406 9.622 -2.763 -1.295 H29 A1JR7 67 A1JR7 H30 H33 H 0 1 N N N N N N -19.210 36.014 -8.171 11.080 -0.848 -0.680 H30 A1JR7 68 A1JR7 H9 H34 H 0 1 N N N N N N -22.026 25.933 -3.324 -2.361 0.096 2.079 H9 A1JR7 69 A1JR7 H3 H36 H 0 1 N N N N N N -22.425 31.493 -3.430 3.551 -0.990 -0.513 H3 A1JR7 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JR7 O1 C2 DOUB N N 1 A1JR7 C2 N3 SING N N 2 A1JR7 N3 C4 SING N N 3 A1JR7 C4 C5 SING N N 4 A1JR7 C5 C6 SING N N 5 A1JR7 C6 N7 SING N N 6 A1JR7 N7 C8 SING N N 7 A1JR7 C8 C9 DOUB Y N 8 A1JR7 C9 C10 SING Y N 9 A1JR7 C10 C11 DOUB Y N 10 A1JR7 C11 C12 SING N N 11 A1JR7 C12 N13 SING N N 12 A1JR7 N13 C14 SING N N 13 A1JR7 C14 C15 SING N N 14 A1JR7 C15 C16 SING N N 15 A1JR7 C16 C17 SING N N 16 A1JR7 C16 C18 SING N N 17 A1JR7 C16 C19 SING N N 18 A1JR7 C19 C20 SING N N 19 A1JR7 C11 C21 SING Y N 20 A1JR7 C21 C22 DOUB Y N 21 A1JR7 N7 C23 SING N N 22 A1JR7 C23 C24 SING N N 23 A1JR7 C2 C25 SING N N 24 A1JR7 C25 N26 SING N N 25 A1JR7 N26 C27 DOUB N N 26 A1JR7 C27 C28 SING N N 27 A1JR7 C28 C29 DOUB N N 28 A1JR7 C29 C30 SING N N 29 A1JR7 C30 C31 DOUB N N 30 A1JR7 C31 N32 SING N N 31 A1JR7 C25 C33 DOUB N N 32 A1JR7 C33 C34 SING N N 33 A1JR7 C34 O35 DOUB N N 34 A1JR7 C24 C4 SING N N 35 A1JR7 C22 C8 SING Y N 36 A1JR7 C20 N13 SING N N 37 A1JR7 N32 C27 SING N N 38 A1JR7 C34 N32 SING N N 39 A1JR7 C4 H4 SING N N 40 A1JR7 C5 H5A SING N N 41 A1JR7 C5 H5B SING N N 42 A1JR7 C6 H6A SING N N 43 A1JR7 C6 H6B SING N N 44 A1JR7 C21 H21 SING N N 45 A1JR7 C22 H22 SING N N 46 A1JR7 C23 H23A SING N N 47 A1JR7 C23 H23B SING N N 48 A1JR7 C31 H31 SING N N 49 A1JR7 C33 H33 SING N N 50 A1JR7 C10 H10 SING N N 51 A1JR7 C12 H12A SING N N 52 A1JR7 C12 H12B SING N N 53 A1JR7 C14 H14A SING N N 54 A1JR7 C14 H14B SING N N 55 A1JR7 C15 H15A SING N N 56 A1JR7 C15 H15B SING N N 57 A1JR7 C17 H17A SING N N 58 A1JR7 C17 H17B SING N N 59 A1JR7 C17 H17C SING N N 60 A1JR7 C18 H18A SING N N 61 A1JR7 C18 H18B SING N N 62 A1JR7 C18 H18C SING N N 63 A1JR7 C19 H19A SING N N 64 A1JR7 C19 H19B SING N N 65 A1JR7 C20 H20A SING N N 66 A1JR7 C20 H20B SING N N 67 A1JR7 C24 H24A SING N N 68 A1JR7 C24 H24B SING N N 69 A1JR7 C28 H28 SING N N 70 A1JR7 C29 H29 SING N N 71 A1JR7 C30 H30 SING N N 72 A1JR7 C9 H9 SING N N 73 A1JR7 N3 H3 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JR7 InChI InChI 1.06 "InChI=1S/C28H35N5O2/c1-28(2)12-17-31(18-13-28)20-21-6-8-23(9-7-21)32-15-10-22(11-16-32)29-27(35)24-19-26(34)33-14-4-3-5-25(33)30-24/h3-9,14,19,22H,10-13,15-18,20H2,1-2H3,(H,29,35)" A1JR7 InChIKey InChI 1.06 YZKAYQNZICFYOW-UHFFFAOYSA-N A1JR7 SMILES_CANONICAL CACTVS 3.385 "CC1(C)CCN(CC1)Cc2ccc(cc2)N3CCC(CC3)NC(=O)C4=CC(=O)N5C=CC=CC5=N4" A1JR7 SMILES CACTVS 3.385 "CC1(C)CCN(CC1)Cc2ccc(cc2)N3CCC(CC3)NC(=O)C4=CC(=O)N5C=CC=CC5=N4" A1JR7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)Cc2ccc(cc2)N3CCC(CC3)NC(=O)C4=CC(=O)N5C=CC=CC5=N4)C" A1JR7 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)Cc2ccc(cc2)N3CCC(CC3)NC(=O)C4=CC(=O)N5C=CC=CC5=N4)C" # _pdbx_chem_comp_identifier.comp_id A1JR7 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[1-[4-[(4,4-dimethylpiperidin-1-yl)methyl]phenyl]piperidin-4-yl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JR7 "Create component" 2025-10-14 PDBE A1JR7 "Initial release" 2026-10-28 RCSB #