data_A1JR8 # _chem_comp.id A1JR8 _chem_comp.name "4-[4-[[(4~{a}~{S},7~{a}~{R})-1-methyl-3,4~{a},5,6,7,7~{a}-hexahydro-2~{H}-cyclopenta[b]pyrazin-4-yl]methyl]-2,5-bis(fluoranyl)phenyl]-9-[6-(methylamino)pyrimidin-4-yl]-1,4,9-triazaspiro[5.5]undecan-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H38 F2 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-14 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 540.651 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JR8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SZ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JR8 C10 C1 C 0 1 N N N N N N 43.945 -35.731 24.755 3.770 1.824 -0.995 C10 A1JR8 1 A1JR8 C15 C2 C 0 1 Y N N N N N 44.338 -32.088 23.278 -0.256 1.104 -0.378 C15 A1JR8 2 A1JR8 C17 C3 C 0 1 Y N N N N N 44.597 -30.025 21.922 -2.097 0.194 0.863 C17 A1JR8 3 A1JR8 C21 C4 C 0 1 N N S N N N 43.147 -26.930 22.405 -5.953 -1.710 -0.571 C21 A1JR8 4 A1JR8 C22 C5 C 0 1 N N N N N N 44.586 -26.566 22.101 -6.207 -2.619 0.647 C22 A1JR8 5 A1JR8 C24 C6 C 0 1 N N N N N N 43.713 -25.130 23.933 -8.344 -2.083 -0.477 C24 A1JR8 6 A1JR8 C28 C7 C 0 1 N N N N N N 41.919 -24.920 20.746 -6.333 0.971 0.348 C28 A1JR8 7 A1JR8 C01 C8 C 0 1 N N N N N N 41.090 -41.677 23.114 7.395 -3.158 -2.437 C01 A1JR8 8 A1JR8 C03 C9 C 0 1 Y N N N N N 40.559 -40.470 25.490 6.562 -2.988 -0.119 C03 A1JR8 9 A1JR8 C04 C10 C 0 1 Y N N N N N 41.448 -39.320 25.380 6.128 -1.692 -0.380 C04 A1JR8 10 A1JR8 C05 C11 C 0 1 Y N N N N N 41.633 -38.377 26.434 5.509 -0.985 0.645 C05 A1JR8 11 A1JR8 C07 C12 C 0 1 N N N N N N 42.757 -36.213 27.317 4.442 0.856 1.651 C07 A1JR8 12 A1JR8 C08 C13 C 0 1 N N N N N N 44.094 -35.423 27.231 4.088 2.328 1.427 C08 A1JR8 13 A1JR8 C09 C14 C 0 1 N N N N N N 42.572 -36.392 25.008 4.132 0.366 -0.702 C09 A1JR8 14 A1JR8 C11 C15 C 0 1 N N N N N N 44.561 -34.869 25.877 3.119 2.441 0.247 C11 A1JR8 15 A1JR8 C12 C16 C 0 1 N N N N N N 44.369 -33.395 25.462 1.832 1.681 0.574 C12 A1JR8 16 A1JR8 C14 C17 C 0 1 N N N N N N 46.362 -33.316 24.230 0.394 3.376 -0.363 C14 A1JR8 17 A1JR8 C16 C18 C 0 1 Y N N N N N 45.111 -31.064 22.744 -1.017 1.056 0.782 C16 A1JR8 18 A1JR8 C18 C19 C 0 1 Y N N N N N 43.226 -29.863 21.538 -2.418 -0.619 -0.210 C18 A1JR8 19 A1JR8 C19 C20 C 0 1 N N N N N N 42.673 -28.641 20.582 -3.595 -1.556 -0.118 C19 A1JR8 20 A1JR8 C23 C21 C 0 1 N N N N N N 44.977 -25.611 23.222 -7.655 -3.115 0.435 C23 A1JR8 21 A1JR8 C25 C22 C 0 1 N N R N N N 42.643 -25.607 22.972 -7.294 -0.978 -0.759 C25 A1JR8 22 A1JR8 C27 C23 C 0 1 N N N N N N 42.223 -23.362 22.569 -8.729 0.784 0.078 C27 A1JR8 23 A1JR8 C29 C24 C 0 1 N N N N N N 42.452 -26.263 20.254 -5.081 0.165 0.712 C29 A1JR8 24 A1JR8 C30 C25 C 0 1 Y N N N N N 42.425 -30.914 22.078 -1.661 -0.573 -1.367 C30 A1JR8 25 A1JR8 C32 C26 C 0 1 Y N N N N N 42.936 -31.983 22.912 -0.581 0.285 -1.454 C32 A1JR8 26 A1JR8 C35 C27 C 0 1 N N N N N N 46.923 -34.521 25.017 1.589 4.285 -0.302 C35 A1JR8 27 A1JR8 C38 C28 C 0 1 Y N N N N N 40.106 -39.646 27.686 5.779 -2.799 2.040 C38 A1JR8 28 A1JR8 F31 F1 F 0 1 N N N N N N 45.481 -29.161 21.502 -2.838 0.146 1.992 F31 A1JR8 29 A1JR8 F33 F2 F 0 1 N N N N N N 42.050 -32.899 23.348 0.157 0.330 -2.585 F33 A1JR8 30 A1JR8 N02 N1 N 0 1 N N N N N N 40.348 -41.450 24.433 7.190 -3.733 -1.105 N02 A1JR8 31 A1JR8 N06 N2 N 0 1 N N N N N N 42.582 -37.237 26.237 5.059 0.310 0.435 N06 A1JR8 32 A1JR8 N13 N3 N 0 1 N N N N N N 44.897 -33.101 24.116 0.832 1.978 -0.465 N13 A1JR8 33 A1JR8 N20 N4 N 0 1 N N N N N N 42.276 -27.335 21.296 -4.836 -0.809 -0.359 N20 A1JR8 34 A1JR8 N26 N5 N 0 1 N N N N N N 42.745 -24.572 21.907 -7.472 0.051 0.275 N26 A1JR8 35 A1JR8 N34 N6 N 0 1 N N N N N N 45.983 -35.228 25.794 2.818 3.847 -0.007 N34 A1JR8 36 A1JR8 N37 N7 N 0 1 Y N N N N N 40.947 -38.563 27.600 5.355 -1.569 1.832 N37 A1JR8 37 A1JR8 N39 N8 N 0 1 Y N N N N N 39.883 -40.589 26.714 6.370 -3.501 1.095 N39 A1JR8 38 A1JR8 O36 O1 O 0 1 N N N N N N 48.053 -34.886 25.011 1.433 5.466 -0.530 O36 A1JR8 39 A1JR8 H101 H1 H 0 0 N N N N N N 44.659 -36.538 24.535 4.672 2.380 -1.248 H101 A1JR8 40 A1JR8 H102 H2 H 0 0 N N N N N N 43.838 -35.086 23.871 3.071 1.865 -1.831 H102 A1JR8 41 A1JR8 H211 H3 H 0 0 N N N N N N 43.125 -27.693 23.197 -5.747 -2.325 -1.447 H211 A1JR8 42 A1JR8 H221 H4 H 0 0 N N N N N N 45.225 -27.461 22.111 -5.511 -3.458 0.652 H221 A1JR8 43 A1JR8 H222 H5 H 0 0 N N N N N N 44.664 -26.071 21.122 -6.129 -2.050 1.574 H222 A1JR8 44 A1JR8 H241 H6 H 0 0 N N N N N N 43.604 -25.596 24.923 -8.651 -2.555 -1.411 H241 A1JR8 45 A1JR8 H242 H7 H 0 0 N N N N N N 43.701 -24.035 24.040 -9.211 -1.656 0.028 H242 A1JR8 46 A1JR8 H281 H8 H 0 0 N N N N N N 40.863 -25.010 21.039 -6.519 1.724 1.113 H281 A1JR8 47 A1JR8 H282 H9 H 0 0 N N N N N N 42.018 -24.156 19.961 -6.189 1.457 -0.617 H282 A1JR8 48 A1JR8 H011 H10 H 0 0 N N N N N N 40.634 -42.521 22.577 6.431 -2.901 -2.875 H011 A1JR8 49 A1JR8 H012 H11 H 0 0 N N N N N N 41.024 -40.770 22.495 8.008 -2.260 -2.355 H012 A1JR8 50 A1JR8 H013 H12 H 0 0 N N N N N N 42.146 -41.903 23.322 7.900 -3.885 -3.073 H013 A1JR8 51 A1JR8 H041 H13 H 0 0 N N N N N N 41.992 -39.175 24.458 6.269 -1.247 -1.354 H041 A1JR8 52 A1JR8 H071 H14 H 0 0 N N N N N N 41.926 -35.495 27.250 5.142 0.773 2.482 H071 A1JR8 53 A1JR8 H072 H15 H 0 0 N N N N N N 42.721 -36.726 28.289 3.536 0.296 1.881 H072 A1JR8 54 A1JR8 H081 H16 H 0 0 N N N N N N 44.003 -34.565 27.913 3.617 2.729 2.325 H081 A1JR8 55 A1JR8 H082 H17 H 0 0 N N N N N N 44.886 -36.095 27.592 4.995 2.892 1.209 H082 A1JR8 56 A1JR8 H091 H18 H 0 0 N N N N N N 42.316 -37.023 24.144 3.227 -0.192 -0.462 H091 A1JR8 57 A1JR8 H092 H19 H 0 0 N N N N N N 41.813 -35.604 25.124 4.607 -0.073 -1.580 H092 A1JR8 58 A1JR8 H121 H20 H 0 0 N N N N N N 43.293 -33.165 25.475 2.034 0.610 0.592 H121 A1JR8 59 A1JR8 H122 H21 H 0 0 N N N N N N 44.889 -32.755 26.190 1.455 2.002 1.545 H122 A1JR8 60 A1JR8 H141 H22 H 0 0 N N N N N N 46.748 -33.404 23.204 -0.203 3.503 0.539 H141 A1JR8 61 A1JR8 H142 H23 H 0 0 N N N N N N 46.776 -32.413 24.701 -0.209 3.629 -1.235 H142 A1JR8 62 A1JR8 H161 H24 H 0 0 N N N N N N 46.168 -31.057 22.968 -0.767 1.690 1.619 H161 A1JR8 63 A1JR8 H191 H25 H 0 0 N N N N N N 43.465 -28.399 19.858 -3.493 -2.342 -0.867 H191 A1JR8 64 A1JR8 H192 H26 H 0 0 N N N N N N 41.787 -29.011 20.046 -3.627 -2.003 0.876 H192 A1JR8 65 A1JR8 H231 H27 H 0 0 N N N N N N 45.628 -26.132 23.940 -7.648 -4.093 -0.046 H231 A1JR8 66 A1JR8 H232 H28 H 0 0 N N N N N N 45.513 -24.748 22.800 -8.174 -3.173 1.392 H232 A1JR8 67 A1JR8 H251 H29 H 0 0 N N N N N N 41.645 -25.681 23.429 -7.394 -0.574 -1.766 H251 A1JR8 68 A1JR8 H271 H30 H 0 0 N N N N N N 42.251 -22.517 21.865 -9.567 0.089 0.129 H271 A1JR8 69 A1JR8 H272 H31 H 0 0 N N N N N N 41.186 -23.538 22.889 -8.836 1.539 0.857 H272 A1JR8 70 A1JR8 H273 H32 H 0 0 N N N N N N 42.843 -23.128 23.447 -8.718 1.268 -0.898 H273 A1JR8 71 A1JR8 H291 H33 H 0 0 N N N N N N 43.522 -26.161 20.022 -4.225 0.835 0.802 H291 A1JR8 72 A1JR8 H292 H34 H 0 0 N N N N N N 41.906 -26.554 19.344 -5.240 -0.357 1.655 H292 A1JR8 73 A1JR8 H301 H35 H 0 0 N N N N N N 41.369 -30.912 21.850 -1.914 -1.209 -2.203 H301 A1JR8 74 A1JR8 H381 H36 H 0 0 N N N N N N 39.565 -39.768 28.613 5.639 -3.244 3.014 H381 A1JR8 75 A1JR8 H021 H37 H 0 0 N N N N N N 39.400 -41.299 24.152 7.493 -4.634 -0.914 H021 A1JR8 76 A1JR8 H341 H40 H 0 0 N N N N N N 46.302 -36.018 26.318 3.540 4.492 0.041 H341 A1JR8 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JR8 C01 N02 SING N N 1 A1JR8 N02 C03 SING N N 2 A1JR8 C03 N39 DOUB Y N 3 A1JR8 C03 C04 SING Y N 4 A1JR8 C04 C05 DOUB Y N 5 A1JR8 C05 N06 SING N N 6 A1JR8 C05 N37 SING Y N 7 A1JR8 N06 C07 SING N N 8 A1JR8 N06 C09 SING N N 9 A1JR8 C07 C08 SING N N 10 A1JR8 C08 C11 SING N N 11 A1JR8 C09 C10 SING N N 12 A1JR8 C10 C11 SING N N 13 A1JR8 C11 C12 SING N N 14 A1JR8 C11 N34 SING N N 15 A1JR8 C12 N13 SING N N 16 A1JR8 N13 C14 SING N N 17 A1JR8 N13 C15 SING N N 18 A1JR8 C14 C35 SING N N 19 A1JR8 C15 C16 DOUB Y N 20 A1JR8 C15 C32 SING Y N 21 A1JR8 C16 C17 SING Y N 22 A1JR8 C17 C18 DOUB Y N 23 A1JR8 C17 F31 SING N N 24 A1JR8 C18 C19 SING N N 25 A1JR8 C18 C30 SING Y N 26 A1JR8 C19 N20 SING N N 27 A1JR8 N20 C29 SING N N 28 A1JR8 N20 C21 SING N N 29 A1JR8 C21 C22 SING N N 30 A1JR8 C21 C25 SING N N 31 A1JR8 C22 C23 SING N N 32 A1JR8 C23 C24 SING N N 33 A1JR8 C24 C25 SING N N 34 A1JR8 C25 N26 SING N N 35 A1JR8 N26 C27 SING N N 36 A1JR8 N26 C28 SING N N 37 A1JR8 C28 C29 SING N N 38 A1JR8 C30 C32 DOUB Y N 39 A1JR8 C32 F33 SING N N 40 A1JR8 N34 C35 SING N N 41 A1JR8 C35 O36 DOUB N N 42 A1JR8 N37 C38 DOUB Y N 43 A1JR8 C38 N39 SING Y N 44 A1JR8 C10 H101 SING N N 45 A1JR8 C10 H102 SING N N 46 A1JR8 C21 H211 SING N N 47 A1JR8 C22 H221 SING N N 48 A1JR8 C22 H222 SING N N 49 A1JR8 C24 H241 SING N N 50 A1JR8 C24 H242 SING N N 51 A1JR8 C28 H281 SING N N 52 A1JR8 C28 H282 SING N N 53 A1JR8 C01 H011 SING N N 54 A1JR8 C01 H012 SING N N 55 A1JR8 C01 H013 SING N N 56 A1JR8 C04 H041 SING N N 57 A1JR8 C07 H071 SING N N 58 A1JR8 C07 H072 SING N N 59 A1JR8 C08 H081 SING N N 60 A1JR8 C08 H082 SING N N 61 A1JR8 C09 H091 SING N N 62 A1JR8 C09 H092 SING N N 63 A1JR8 C12 H121 SING N N 64 A1JR8 C12 H122 SING N N 65 A1JR8 C14 H141 SING N N 66 A1JR8 C14 H142 SING N N 67 A1JR8 C16 H161 SING N N 68 A1JR8 C19 H191 SING N N 69 A1JR8 C19 H192 SING N N 70 A1JR8 C23 H231 SING N N 71 A1JR8 C23 H232 SING N N 72 A1JR8 C25 H251 SING N N 73 A1JR8 C27 H271 SING N N 74 A1JR8 C27 H272 SING N N 75 A1JR8 C27 H273 SING N N 76 A1JR8 C29 H291 SING N N 77 A1JR8 C29 H292 SING N N 78 A1JR8 C30 H301 SING N N 79 A1JR8 C38 H381 SING N N 80 A1JR8 N02 H021 SING N N 81 A1JR8 N34 H341 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JR8 InChI InChI 1.06 "InChI=1S/C28H38F2N8O/c1-31-25-14-26(33-18-32-25)36-8-6-28(7-9-36)17-38(16-27(39)34-28)24-13-20(29)19(12-21(24)30)15-37-11-10-35(2)22-4-3-5-23(22)37/h12-14,18,22-23H,3-11,15-17H2,1-2H3,(H,34,39)(H,31,32,33)/t22-,23+/m1/s1" A1JR8 InChIKey InChI 1.06 WVFHYMUPINBCOF-PKTZIBPZSA-N A1JR8 SMILES_CANONICAL CACTVS 3.385 "CNc1cc(ncn1)N2CCC3(CC2)CN(CC(=O)N3)c4cc(F)c(CN5CCN(C)[C@@H]6CCC[C@H]56)cc4F" A1JR8 SMILES CACTVS 3.385 "CNc1cc(ncn1)N2CCC3(CC2)CN(CC(=O)N3)c4cc(F)c(CN5CCN(C)[CH]6CCC[CH]56)cc4F" A1JR8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1cc(ncn1)N2CCC3(CC2)CN(CC(=O)N3)c4cc(c(cc4F)CN5CCN([C@H]6[C@@H]5CCC6)C)F" A1JR8 SMILES "OpenEye OEToolkits" 2.0.7 "CNc1cc(ncn1)N2CCC3(CC2)CN(CC(=O)N3)c4cc(c(cc4F)CN5CCN(C6C5CCC6)C)F" # _pdbx_chem_comp_identifier.comp_id A1JR8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[4-[[(4~{a}~{S},7~{a}~{R})-1-methyl-3,4~{a},5,6,7,7~{a}-hexahydro-2~{H}-cyclopenta[b]pyrazin-4-yl]methyl]-2,5-bis(fluoranyl)phenyl]-9-[6-(methylamino)pyrimidin-4-yl]-1,4,9-triazaspiro[5.5]undecan-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JR8 "Create component" 2025-10-14 PDBE A1JR8 "Modify PCM" 2025-10-14 PDBE A1JR8 "Initial release" 2026-11-04 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1JR8 _pdbx_chem_comp_pcm.modified_residue_id ILE _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C38 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom CD1 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #