data_A1JR9 # _chem_comp.id A1JR9 _chem_comp.name "1-[bis(fluoranyl)methyl]-~{N}-[[2-[[(3-fluoranyl-1-bicyclo[1.1.1]pentanyl)methylamino]methyl]-1~{H}-indol-6-yl]methyl]-5-oxidanylidene-imidazo[1,2-a]pyrimidine-7-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H23 F3 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-14 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 484.474 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JR9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SZ2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JR9 C10 C1 C 0 1 Y N N N N N 43.263 -30.654 22.390 3.864 2.514 0.062 C10 A1JR9 1 A1JR9 N12 N1 N 0 1 N N N N N N 42.958 -28.158 22.270 5.533 0.765 -0.186 N12 A1JR9 2 A1JR9 C13 C2 C 0 1 N N N N N N 42.980 -26.987 21.356 6.936 0.437 -0.473 C13 A1JR9 3 A1JR9 C15 C3 C 0 1 N N N N N N 42.105 -24.380 21.420 8.412 -1.907 -0.637 C15 A1JR9 4 A1JR9 C21 C4 C 0 1 Y N N N N N 43.189 -32.271 24.029 1.658 2.806 -0.247 C21 A1JR9 5 A1JR9 C22 C5 C 0 1 Y N N N N N 42.828 -33.119 25.109 0.350 2.925 -0.706 C22 A1JR9 6 A1JR9 C24 C6 C 0 1 N N N N N N 40.170 -38.968 27.010 -6.032 0.519 -0.908 C24 A1JR9 7 A1JR9 C28 C7 C 0 1 N N N N N N 39.670 -41.688 24.381 -6.267 -3.089 -0.056 C28 A1JR9 8 A1JR9 C02 C8 C 0 1 N N N N N N 41.723 -37.036 26.921 -4.029 1.966 -0.612 C02 A1JR9 9 A1JR9 C04 C9 C 0 1 N N N N N N 43.300 -35.036 26.670 -2.072 3.389 -0.325 C04 A1JR9 10 A1JR9 C05 C10 C 0 1 Y N N N N N 43.681 -34.118 25.548 -0.655 3.261 0.174 C05 A1JR9 11 A1JR9 C06 C11 C 0 1 Y N N N N N 44.921 -34.264 24.864 -0.377 3.483 1.516 C06 A1JR9 12 A1JR9 C07 C12 C 0 1 Y N N N N N 45.298 -33.438 23.819 0.900 3.372 1.987 C07 A1JR9 13 A1JR9 C08 C13 C 0 1 Y N N N N N 44.434 -32.407 23.353 1.936 3.039 1.112 C08 A1JR9 14 A1JR9 C09 C14 C 0 1 Y N N N N N 44.458 -31.374 22.339 3.377 2.833 1.272 C09 A1JR9 15 A1JR9 C11 C15 C 0 1 N N N N N N 42.779 -29.456 21.559 5.311 2.216 -0.237 C11 A1JR9 16 A1JR9 C14 C16 C 0 1 N N N N N N 42.714 -25.716 22.046 7.128 -1.080 -0.410 C14 A1JR9 17 A1JR9 C16 C17 C 0 1 N N N N N N 42.508 -23.982 22.905 7.385 -3.024 -0.350 C16 A1JR9 18 A1JR9 C18 C18 C 0 1 N N N N N N 41.839 -25.393 23.310 6.894 -2.046 0.777 C18 A1JR9 19 A1JR9 C19 C19 C 0 1 N N N N N N 43.843 -24.814 22.671 6.446 -2.186 -1.253 C19 A1JR9 20 A1JR9 C23 C20 C 0 1 N N N N N N 41.102 -38.273 26.306 -4.711 0.651 -0.506 C23 A1JR9 21 A1JR9 C25 C21 C 0 1 N N N N N N 39.587 -40.172 26.472 -6.649 -0.738 -0.788 C25 A1JR9 22 A1JR9 C29 C22 C 0 1 N N N N N N 40.381 -41.649 23.224 -5.201 -3.703 0.455 C29 A1JR9 23 A1JR9 C31 C23 C 0 1 N N N N N N 42.108 -40.248 22.082 -2.831 -3.047 1.069 C31 A1JR9 24 A1JR9 C34 C24 C 0 1 N N N N N N 41.023 -39.797 24.505 -4.643 -1.586 0.093 C34 A1JR9 25 A1JR9 F17 F1 F 0 1 N N N N N N 42.405 -22.840 23.461 7.581 -4.408 -0.298 F17 A1JR9 26 A1JR9 F32 F2 F 0 1 N N N N N N 41.682 -39.143 21.433 -1.890 -2.772 0.070 F32 A1JR9 27 A1JR9 F33 F3 F 0 1 N N N N N N 43.363 -40.040 22.438 -2.587 -2.229 2.177 F33 A1JR9 28 A1JR9 N03 N2 N 0 1 N N N N N N 42.601 -36.243 26.212 -2.745 2.092 -0.221 N03 A1JR9 29 A1JR9 N20 N3 N 0 1 Y N N N N N 42.501 -31.193 23.445 2.852 2.493 -0.858 N20 A1JR9 30 A1JR9 N27 N4 N 0 1 N N N N N N 40.042 -40.572 25.164 -5.936 -1.768 -0.287 N27 A1JR9 31 A1JR9 N30 N5 N 0 1 N N N N N N 41.230 -40.508 23.262 -4.178 -2.784 0.556 N30 A1JR9 32 A1JR9 N35 N6 N 0 1 N N N N N N 41.579 -38.668 25.021 -4.056 -0.406 -0.023 N35 A1JR9 33 A1JR9 O01 O1 O 0 1 N N N N N N 41.459 -36.784 28.097 -4.627 2.927 -1.052 O01 A1JR9 34 A1JR9 O26 O2 O 0 1 N N N N N N 38.740 -40.853 27.012 -7.810 -0.895 -1.131 O26 A1JR9 35 A1JR9 H1 H1 H 0 1 N N N N N N 42.203 -28.043 22.916 5.249 0.387 0.705 H1 A1JR9 36 A1JR9 H131 H3 H 0 0 N N N N N N 43.972 -26.929 20.884 7.197 0.796 -1.469 H131 A1JR9 37 A1JR9 H132 H4 H 0 0 N N N N N N 42.213 -27.133 20.581 7.580 0.915 0.266 H132 A1JR9 38 A1JR9 H151 H5 H 0 0 N N N N N N 42.668 -23.906 20.602 8.798 -1.888 -1.656 H151 A1JR9 39 A1JR9 H152 H6 H 0 0 N N N N N N 41.033 -24.383 21.174 9.180 -1.781 0.126 H152 A1JR9 40 A1JR9 H221 H7 H 0 0 N N N N N N 41.874 -32.983 25.596 0.124 2.754 -1.748 H221 A1JR9 41 A1JR9 H241 H8 H 0 0 N N N N N N 39.863 -38.615 27.983 -6.576 1.365 -1.301 H241 A1JR9 42 A1JR9 H281 H9 H 0 0 N N N N N N 38.946 -42.441 24.655 -7.225 -3.546 -0.255 H281 A1JR9 43 A1JR9 H041 H10 H 0 0 N N N N N N 42.641 -34.490 27.361 -2.604 4.124 0.277 H041 A1JR9 44 A1JR9 H042 H11 H 0 0 N N N N N N 44.215 -35.340 27.200 -2.062 3.710 -1.367 H042 A1JR9 45 A1JR9 H061 H12 H 0 0 N N N N N N 45.594 -35.050 25.173 -1.177 3.746 2.192 H061 A1JR9 46 A1JR9 H071 H13 H 0 0 N N N N N N 46.261 -33.578 23.351 1.110 3.547 3.032 H071 A1JR9 47 A1JR9 H091 H14 H 0 0 N N N N N N 45.271 -31.190 21.652 3.941 2.920 2.189 H091 A1JR9 48 A1JR9 H111 H15 H 0 0 N N N N N N 41.711 -29.591 21.335 5.560 2.587 -1.231 H111 A1JR9 49 A1JR9 H112 H16 H 0 0 N N N N N N 43.350 -29.425 20.619 5.943 2.707 0.503 H112 A1JR9 50 A1JR9 H181 H17 H 0 0 N N N N N N 42.150 -25.841 24.265 7.573 -1.913 1.620 H181 A1JR9 51 A1JR9 H182 H18 H 0 0 N N N N N N 40.748 -25.481 23.202 5.851 -2.174 1.068 H182 A1JR9 52 A1JR9 H191 H19 H 0 0 N N N N N N 44.584 -24.388 21.979 5.381 -2.321 -1.059 H191 A1JR9 53 A1JR9 H192 H20 H 0 0 N N N N N N 44.355 -25.200 23.564 6.705 -2.184 -2.311 H192 A1JR9 54 A1JR9 H291 H21 H 0 0 N N N N N N 40.313 -42.361 22.415 -5.147 -4.743 0.741 H291 A1JR9 55 A1JR9 H311 H22 H 0 0 N N N N N N 42.042 -41.120 21.415 -2.752 -4.093 1.364 H311 A1JR9 56 A1JR9 H031 H23 H 0 0 N N N N N N 42.784 -36.525 25.270 -2.267 1.324 0.131 H031 A1JR9 57 A1JR9 H201 H24 H 0 0 N N N N N N 41.604 -30.859 23.735 2.958 2.284 -1.799 H201 A1JR9 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JR9 C02 O01 DOUB N N 1 A1JR9 C04 N03 SING N N 2 A1JR9 C05 C04 SING N N 3 A1JR9 C06 C05 DOUB Y N 4 A1JR9 C07 C06 SING Y N 5 A1JR9 C08 C07 DOUB Y N 6 A1JR9 C09 C08 SING Y N 7 A1JR9 C10 C09 DOUB Y N 8 A1JR9 N12 C11 SING N N 9 A1JR9 C13 N12 SING N N 10 A1JR9 C14 C13 SING N N 11 A1JR9 C15 C14 SING N N 12 A1JR9 C16 C15 SING N N 13 A1JR9 F17 C16 SING N N 14 A1JR9 C18 C16 SING N N 15 A1JR9 C19 C16 SING N N 16 A1JR9 C11 C10 SING N N 17 A1JR9 N20 C10 SING Y N 18 A1JR9 C21 N20 SING Y N 19 A1JR9 C22 C21 DOUB Y N 20 A1JR9 N03 C02 SING N N 21 A1JR9 C23 C02 SING N N 22 A1JR9 C24 C23 DOUB N N 23 A1JR9 C25 C24 SING N N 24 A1JR9 O26 C25 DOUB N N 25 A1JR9 N27 C25 SING N N 26 A1JR9 C28 N27 SING N N 27 A1JR9 C29 C28 DOUB N N 28 A1JR9 N30 C29 SING N N 29 A1JR9 F32 C31 SING N N 30 A1JR9 F33 C31 SING N N 31 A1JR9 C31 N30 SING N N 32 A1JR9 C34 N30 SING N N 33 A1JR9 N35 C34 DOUB N N 34 A1JR9 C05 C22 SING Y N 35 A1JR9 C08 C21 SING Y N 36 A1JR9 C14 C18 SING N N 37 A1JR9 C14 C19 SING N N 38 A1JR9 C23 N35 SING N N 39 A1JR9 N27 C34 SING N N 40 A1JR9 N12 H1 SING N N 41 A1JR9 C13 H131 SING N N 42 A1JR9 C13 H132 SING N N 43 A1JR9 C15 H151 SING N N 44 A1JR9 C15 H152 SING N N 45 A1JR9 C22 H221 SING N N 46 A1JR9 C24 H241 SING N N 47 A1JR9 C28 H281 SING N N 48 A1JR9 C04 H041 SING N N 49 A1JR9 C04 H042 SING N N 50 A1JR9 C06 H061 SING N N 51 A1JR9 C07 H071 SING N N 52 A1JR9 C09 H091 SING N N 53 A1JR9 C11 H111 SING N N 54 A1JR9 C11 H112 SING N N 55 A1JR9 C18 H181 SING N N 56 A1JR9 C18 H182 SING N N 57 A1JR9 C19 H191 SING N N 58 A1JR9 C19 H192 SING N N 59 A1JR9 C29 H291 SING N N 60 A1JR9 C31 H311 SING N N 61 A1JR9 N03 H031 SING N N 62 A1JR9 N20 H201 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JR9 InChI InChI 1.06 "InChI=1S/C24H23F3N6O2/c25-21(26)33-4-3-32-19(34)7-18(31-22(32)33)20(35)29-8-14-1-2-15-6-16(30-17(15)5-14)9-28-13-23-10-24(27,11-23)12-23/h1-7,21,28,30H,8-13H2,(H,29,35)/t23-,24+" A1JR9 InChIKey InChI 1.06 CHTZDBHGVNXXBD-PSWAGMNNSA-N A1JR9 SMILES_CANONICAL CACTVS 3.385 "FC(F)N1C=CN2C(=O)C=C(N=C12)C(=O)NCc3ccc4cc(CNCC56CC(F)(C5)C6)[nH]c4c3" A1JR9 SMILES CACTVS 3.385 "FC(F)N1C=CN2C(=O)C=C(N=C12)C(=O)NCc3ccc4cc(CNCC56CC(F)(C5)C6)[nH]c4c3" A1JR9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2cc([nH]c2cc1CNC(=O)C3=CC(=O)N4C=CN(C4=N3)C(F)F)CNCC56CC(C5)(C6)F" A1JR9 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2cc([nH]c2cc1CNC(=O)C3=CC(=O)N4C=CN(C4=N3)C(F)F)CNCC56CC(C5)(C6)F" # _pdbx_chem_comp_identifier.comp_id A1JR9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[bis(fluoranyl)methyl]-~{N}-[[2-[[(3-fluoranyl-1-bicyclo[1.1.1]pentanyl)methylamino]methyl]-1~{H}-indol-6-yl]methyl]-5-oxidanylidene-imidazo[1,2-a]pyrimidine-7-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JR9 "Create component" 2025-10-14 PDBE A1JR9 "Initial release" 2026-11-04 RCSB #