data_A1JRY # _chem_comp.id A1JRY _chem_comp.name "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[[4-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-3-(trifluoromethyl)phenyl]methyl]amino]-2-azanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H25 F3 N8 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-13 _chem_comp.pdbx_modified_date 2026-10-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 570.479 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JRY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SYK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JRY C02 C1 C 0 1 N N S N N N 23.099 -1.108 -14.295 -1.065 -2.522 -1.029 C02 A1JRY 1 A1JRY C03 C2 C 0 1 N N R N N N 24.280 -0.647 -13.372 -2.528 -2.611 -0.539 C03 A1JRY 2 A1JRY C04 C3 C 0 1 N N R N N N 23.680 -1.111 -12.023 -2.776 -1.251 0.150 C04 A1JRY 3 A1JRY C06 C4 C 0 1 Y N N N N N 24.593 -1.142 -9.615 -5.263 -1.139 0.607 C06 A1JRY 4 A1JRY C08 C5 C 0 1 Y N N N N N 23.982 -0.206 -7.641 -6.725 -2.051 2.128 C08 A1JRY 5 A1JRY C10 C6 C 0 1 Y N N N N N 25.979 -1.583 -7.587 -7.621 -0.639 0.537 C10 A1JRY 6 A1JRY C12 C7 C 0 1 Y N N N N N 25.723 -1.773 -8.994 -6.334 -0.461 0.000 C12 A1JRY 7 A1JRY C17 C8 C 0 1 N N R N N N 22.296 -2.280 -13.558 -0.601 -1.118 -0.581 C17 A1JRY 8 A1JRY C18 C9 C 0 1 N N N N N N 22.346 -3.740 -14.193 0.316 -0.499 -1.638 C18 A1JRY 9 A1JRY C22 C10 C 0 1 Y N N N N N 22.158 -6.604 -15.672 3.546 -0.821 -2.086 C22 A1JRY 10 A1JRY C23 C11 C 0 1 Y N N N N N 21.978 -8.015 -15.810 4.590 -1.615 -1.649 C23 A1JRY 11 A1JRY C24 C12 C 0 1 Y N N N N N 21.823 -8.554 -17.097 5.277 -1.281 -0.497 C24 A1JRY 12 A1JRY O27 O1 O 0 1 N N N N N N 22.447 -10.717 -16.528 6.709 -3.125 -0.659 O27 A1JRY 13 A1JRY C29 C13 C 0 1 N N N N N N 21.672 -8.264 -19.702 5.667 0.210 1.476 C29 A1JRY 14 A1JRY C34 C14 C 0 1 N N N N N N 20.213 -4.021 -15.285 -0.205 1.840 -1.288 C34 A1JRY 15 A1JRY C38 C15 C 0 1 N N N N N N 16.845 -2.526 -16.816 -0.733 5.116 0.616 C38 A1JRY 16 A1JRY C14 C16 C 0 1 Y N N N N N 25.748 -2.348 -11.146 -4.537 0.059 -1.096 C14 A1JRY 17 A1JRY C20 C17 C 0 1 N N N N N N 22.352 -4.243 -16.708 2.054 1.174 -1.850 C20 A1JRY 18 A1JRY C21 C18 C 0 1 Y N N N N N 22.175 -5.761 -16.819 3.188 0.306 -1.371 C21 A1JRY 19 A1JRY C28 C19 C 0 1 Y N N N N N 21.848 -7.722 -18.246 4.919 -0.154 0.219 C28 A1JRY 20 A1JRY C33 C20 C 0 1 Y N N N N N 22.017 -6.345 -18.101 3.871 0.637 -0.215 C33 A1JRY 21 A1JRY C35 C21 C 0 1 N N N N N N 19.209 -3.363 -16.263 0.136 3.010 -0.363 C35 A1JRY 22 A1JRY C36 C22 C 0 1 N N S N N N 17.725 -3.368 -15.751 -0.995 4.040 -0.406 C36 A1JRY 23 A1JRY F30 F1 F 0 1 N N N N N N 20.421 -8.566 -20.022 5.122 1.378 2.021 F30 A1JRY 24 A1JRY F31 F2 F 0 1 N N N N N N 22.455 -9.301 -19.979 5.557 -0.833 2.402 F31 A1JRY 25 A1JRY F32 F3 F 0 1 N N N N N N 22.018 -7.354 -20.564 7.015 0.423 1.171 F32 A1JRY 26 A1JRY N05 N1 N 0 1 Y N N N N N 24.648 -1.466 -10.984 -4.144 -0.792 -0.106 N05 A1JRY 27 A1JRY N07 N2 N 0 1 Y N N N N N 23.684 -0.333 -8.961 -5.503 -1.913 1.660 N07 A1JRY 28 A1JRY N09 N3 N 0 1 Y N N N N N 25.049 -0.773 -6.955 -7.764 -1.440 1.587 N09 A1JRY 29 A1JRY N11 N4 N 0 1 N N N N N N 27.075 -2.137 -6.902 -8.715 -0.002 -0.022 N11 A1JRY 30 A1JRY N13 N5 N 0 1 Y N N N N N 26.413 -2.513 -9.985 -5.822 0.251 -1.032 N13 A1JRY 31 A1JRY N19 N6 N 0 1 N N N N N N 21.660 -3.622 -15.504 0.818 0.794 -1.153 N19 A1JRY 32 A1JRY N25 N7 N 1 1 N N N N N N 21.627 -10.129 -17.195 6.394 -2.131 -0.028 N25 A1JRY 33 A1JRY N37 N8 N 0 1 N N N N N N 17.220 -4.728 -15.620 -1.059 4.641 -1.744 N37 A1JRY 34 A1JRY O01 O2 O 0 1 N N N N N N 22.117 -0.098 -14.559 -0.267 -3.534 -0.411 O01 A1JRY 35 A1JRY O15 O3 O 0 1 N N N N N N 22.915 -2.311 -12.268 -1.821 -0.352 -0.453 O15 A1JRY 36 A1JRY O16 O4 O 0 1 N N N N N N 24.377 0.706 -13.216 -2.678 -3.683 0.395 O16 A1JRY 37 A1JRY O26 O5 O -1 1 N N N N N N 20.770 -10.643 -17.829 6.999 -1.837 0.987 O26 A1JRY 38 A1JRY O39 O6 O 0 1 N N N N N N 15.723 -2.989 -16.993 -1.033 4.903 1.907 O39 A1JRY 39 A1JRY O40 O7 O 0 1 N N N N N N 17.371 -1.556 -17.353 -0.252 6.170 0.274 O40 A1JRY 40 A1JRY H021 H1 H 0 0 N N N N N N 23.513 -1.505 -15.234 -1.020 -2.611 -2.114 H021 A1JRY 41 A1JRY H031 H2 H 0 0 N N N N N N 25.220 -1.166 -13.613 -3.206 -2.742 -1.382 H031 A1JRY 42 A1JRY H041 H3 H 0 0 N N N N N N 23.016 -0.318 -11.649 -2.598 -1.330 1.222 H041 A1JRY 43 A1JRY H081 H4 H 0 0 N N N N N N 23.311 0.407 -7.057 -6.885 -2.688 2.985 H081 A1JRY 44 A1JRY H171 H5 H 0 0 N N N N N N 21.242 -1.975 -13.473 -0.087 -1.176 0.379 H171 A1JRY 45 A1JRY H182 H6 H 0 0 N N N N N N 23.388 -4.064 -14.331 1.157 -1.167 -1.826 H182 A1JRY 46 A1JRY H181 H7 H 0 0 N N N N N N 21.821 -4.459 -13.547 -0.243 -0.349 -2.561 H181 A1JRY 47 A1JRY H221 H8 H 0 0 N N N N N N 22.282 -6.174 -14.689 3.012 -1.080 -2.989 H221 A1JRY 48 A1JRY H231 H9 H 0 0 N N N N N N 21.962 -8.655 -14.940 4.870 -2.496 -2.208 H231 A1JRY 49 A1JRY H342 H10 H 0 0 N N N N N N 20.137 -5.113 -15.398 -1.179 1.433 -1.016 H342 A1JRY 50 A1JRY H341 H11 H 0 0 N N N N N N 19.930 -3.738 -14.260 -0.234 2.189 -2.320 H341 A1JRY 51 A1JRY H141 H12 H 0 0 N N N N N N 26.017 -2.824 -12.077 -3.879 0.506 -1.826 H141 A1JRY 52 A1JRY H202 H13 H 0 0 N N N N N N 23.428 -4.025 -16.638 2.283 2.219 -1.641 H202 A1JRY 53 A1JRY H201 H14 H 0 0 N N N N N N 21.943 -3.780 -17.618 1.922 1.039 -2.924 H201 A1JRY 54 A1JRY H331 H15 H 0 0 N N N N N N 22.028 -5.715 -18.978 3.591 1.517 0.344 H331 A1JRY 55 A1JRY H351 H16 H 0 0 N N N N N N 19.516 -2.319 -16.424 0.255 2.644 0.656 H351 A1JRY 56 A1JRY H352 H17 H 0 0 N N N N N N 19.248 -3.908 -17.218 1.064 3.475 -0.693 H352 A1JRY 57 A1JRY H361 H18 H 0 0 N N N N N N 17.682 -2.849 -14.782 -1.942 3.549 -0.182 H361 A1JRY 58 A1JRY H111 H19 H 0 0 N N N N N N 27.049 -1.851 -5.944 -9.599 -0.139 0.353 H111 A1JRY 59 A1JRY H112 H20 H 0 0 N N N N N N 27.030 -3.135 -6.953 -8.598 0.580 -0.789 H112 A1JRY 60 A1JRY H3 H22 H 0 1 N N N N N N 16.275 -4.703 -15.293 -1.839 5.278 -1.817 H3 A1JRY 61 A1JRY H371 H23 H 0 0 N N N N N N 17.253 -5.183 -16.510 -0.192 5.102 -1.976 H371 A1JRY 62 A1JRY H011 H25 H 0 0 N N N N N N 21.439 -0.454 -15.122 -0.534 -4.436 -0.634 H011 A1JRY 63 A1JRY H161 H26 H 0 0 N N N N N N 24.741 1.091 -14.005 -2.476 -4.555 0.029 H161 A1JRY 64 A1JRY H4 H28 H 0 1 N N N N N N 15.266 -2.472 -17.646 -0.846 5.622 2.526 H4 A1JRY 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JRY C02 O01 SING N N 1 A1JRY C06 N05 SING Y N 2 A1JRY C08 N07 DOUB Y N 3 A1JRY N09 C08 SING Y N 4 A1JRY C10 N09 DOUB Y N 5 A1JRY N11 C10 SING N N 6 A1JRY N07 C06 SING Y N 7 A1JRY C12 C06 DOUB Y N 8 A1JRY N13 C12 SING Y N 9 A1JRY C14 N13 DOUB Y N 10 A1JRY N05 C04 SING N N 11 A1JRY O15 C04 SING N N 12 A1JRY C04 C03 SING N N 13 A1JRY O16 C03 SING N N 14 A1JRY C03 C02 SING N N 15 A1JRY C17 C02 SING N N 16 A1JRY C18 C17 SING N N 17 A1JRY N19 C18 SING N N 18 A1JRY C21 C20 SING N N 19 A1JRY C22 C21 DOUB Y N 20 A1JRY C23 C22 SING Y N 21 A1JRY C24 C23 DOUB Y N 22 A1JRY O26 N25 SING N N 23 A1JRY O27 N25 DOUB N N 24 A1JRY N25 C24 SING N N 25 A1JRY C28 C24 SING Y N 26 A1JRY F30 C29 SING N N 27 A1JRY F31 C29 SING N N 28 A1JRY F32 C29 SING N N 29 A1JRY C29 C28 SING N N 30 A1JRY C33 C28 DOUB Y N 31 A1JRY C20 N19 SING N N 32 A1JRY C34 N19 SING N N 33 A1JRY C35 C34 SING N N 34 A1JRY C36 C35 SING N N 35 A1JRY N37 C36 SING N N 36 A1JRY C38 C36 SING N N 37 A1JRY O39 C38 SING N N 38 A1JRY O40 C38 DOUB N N 39 A1JRY N05 C14 SING Y N 40 A1JRY C10 C12 SING Y N 41 A1JRY O15 C17 SING N N 42 A1JRY C21 C33 SING Y N 43 A1JRY C02 H021 SING N N 44 A1JRY C03 H031 SING N N 45 A1JRY C04 H041 SING N N 46 A1JRY C08 H081 SING N N 47 A1JRY C17 H171 SING N N 48 A1JRY C18 H182 SING N N 49 A1JRY C18 H181 SING N N 50 A1JRY C22 H221 SING N N 51 A1JRY C23 H231 SING N N 52 A1JRY C34 H342 SING N N 53 A1JRY C34 H341 SING N N 54 A1JRY C14 H141 SING N N 55 A1JRY C20 H202 SING N N 56 A1JRY C20 H201 SING N N 57 A1JRY C33 H331 SING N N 58 A1JRY C35 H351 SING N N 59 A1JRY C35 H352 SING N N 60 A1JRY C36 H361 SING N N 61 A1JRY N11 H111 SING N N 62 A1JRY N11 H112 SING N N 63 A1JRY N37 H3 SING N N 64 A1JRY N37 H371 SING N N 65 A1JRY O01 H011 SING N N 66 A1JRY O16 H161 SING N N 67 A1JRY O39 H4 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JRY InChI InChI 1.06 "InChI=1S/C22H25F3N8O7/c23-22(24,25)11-5-10(1-2-13(11)33(38)39)6-31(4-3-12(26)21(36)37)7-14-16(34)17(35)20(40-14)32-9-30-15-18(27)28-8-29-19(15)32/h1-2,5,8-9,12,14,16-17,20,34-35H,3-4,6-7,26H2,(H,36,37)(H2,27,28,29)/t12-,14+,16+,17+,20+/m0/s1" A1JRY InChIKey InChI 1.06 JPECMMZHGMEUBF-SQIXAUHQSA-N A1JRY SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)Cc4ccc(c(c4)C(F)(F)F)[N+]([O-])=O)C(O)=O" A1JRY SMILES CACTVS 3.385 "N[CH](CCN(C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)Cc4ccc(c(c4)C(F)(F)F)[N+]([O-])=O)C(O)=O" A1JRY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CN(CC[C@@H](C(=O)O)N)C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)C(F)(F)F)[N+](=O)[O-]" A1JRY SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CN(CCC(C(=O)O)N)CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)C(F)(F)F)[N+](=O)[O-]" # _pdbx_chem_comp_identifier.comp_id A1JRY _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[[4-nitro-3-(trifluoromethyl)phenyl]methyl]amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JRY "Create component" 2025-10-13 PDBE A1JRY "Initial release" 2026-10-28 RCSB #