data_A1JRZ # _chem_comp.id A1JRZ _chem_comp.name "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(2-phenylphenyl)methyl]amino]-2-azanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-13 _chem_comp.pdbx_modified_date 2026-10-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 533.579 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JRZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SYL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JRZ C1 C1 C 0 1 N N S N N N 17.473 -3.136 -14.747 -3.828 2.882 1.037 C1 A1JRZ 1 A1JRZ C2 C2 C 0 1 N N N N N N 18.923 -3.200 -15.239 -3.330 1.830 0.044 C2 A1JRZ 2 A1JRZ C3 C3 C 0 1 N N N N N N 19.833 -3.573 -14.050 -2.332 0.903 0.740 C3 A1JRZ 3 A1JRZ O4 O1 O 0 1 N N N N N N 17.087 -1.447 -16.420 -4.130 4.844 -0.431 O4 A1JRZ 4 A1JRZ N5 N1 N 0 1 Y N N N N N 24.849 -0.598 -6.086 7.348 0.158 1.204 N5 A1JRZ 5 A1JRZ N6 N2 N 0 1 Y N N N N N 23.544 -0.325 -8.044 5.356 1.320 1.056 N6 A1JRZ 6 A1JRZ C7 C4 C 0 1 Y N N N N N 25.027 -4.218 -16.373 -2.674 -2.532 3.513 C7 A1JRZ 7 A1JRZ C8 C5 C 0 1 Y N N N N N 25.443 -5.479 -16.730 -3.552 -3.446 2.961 C8 A1JRZ 8 A1JRZ C9 C6 C 0 1 Y N N N N N 24.600 -6.557 -16.588 -3.611 -3.609 1.591 C9 A1JRZ 9 A1JRZ C10 C7 C 0 1 Y N N N N N 23.314 -6.392 -16.087 -2.784 -2.850 0.766 C10 A1JRZ 10 A1JRZ C11 C8 C 0 1 Y N N N N N 22.378 -7.594 -15.945 -2.843 -3.021 -0.707 C11 A1JRZ 11 A1JRZ C12 C9 C 0 1 Y N N N N N 22.287 -8.299 -14.760 -1.689 -3.338 -1.421 C12 A1JRZ 12 A1JRZ C14 C10 C 0 1 Y N N N N N 20.637 -9.758 -15.745 -2.953 -3.340 -3.455 C14 A1JRZ 13 A1JRZ C15 C11 C 0 1 Y N N N N N 20.721 -9.049 -16.922 -4.102 -3.029 -2.751 C15 A1JRZ 14 A1JRZ C16 C12 C 0 1 Y N N N N N 21.589 -7.967 -17.021 -4.053 -2.869 -1.381 C16 A1JRZ 15 A1JRZ C17 C13 C 0 1 N N N N N N 22.099 -3.586 -13.188 -1.025 0.605 -1.275 C17 A1JRZ 16 A1JRZ C18 C14 C 0 1 N N R N N N 22.118 -2.237 -12.524 0.183 1.300 -0.643 C18 A1JRZ 17 A1JRZ C19 C15 C 0 1 N N S N N N 22.893 -1.182 -13.237 0.931 2.145 -1.698 C19 A1JRZ 18 A1JRZ C21 C16 C 0 1 N N R N N N 23.504 -1.124 -10.924 2.398 1.042 -0.096 C21 A1JRZ 19 A1JRZ C22 C17 C 0 1 Y N N N N N 25.486 -2.131 -10.158 3.534 -1.126 -0.709 C22 A1JRZ 20 A1JRZ C13 C18 C 0 1 Y N N N N N 21.414 -9.379 -14.658 -1.750 -3.496 -2.791 C13 A1JRZ 21 A1JRZ C20 C19 C 0 1 N N R N N N 23.949 -0.719 -12.285 2.422 1.972 -1.329 C20 A1JRZ 22 A1JRZ C23 C20 C 0 1 Y N N N N N 25.503 -1.567 -8.087 5.520 -0.834 0.112 C23 A1JRZ 23 A1JRZ C24 C21 C 0 1 Y N N N N N 25.708 -1.323 -6.765 6.854 -0.887 0.548 C24 A1JRZ 24 A1JRZ C25 C22 C 0 1 Y N N N N N 23.761 -0.088 -6.715 6.610 1.226 1.445 C25 A1JRZ 25 A1JRZ C26 C23 C 0 1 Y N N N N N 24.411 -1.054 -8.717 4.776 0.325 0.393 C26 A1JRZ 26 A1JRZ C27 C24 C 0 1 N N N N N N 16.619 -2.433 -15.782 -4.694 3.883 0.317 C27 A1JRZ 27 A1JRZ C4 C25 C 0 1 N N N N N N 21.459 -4.909 -15.140 -1.007 -1.102 0.442 C4 A1JRZ 28 A1JRZ C5 C26 C 0 1 Y N N N N N 22.885 -5.102 -15.711 -1.901 -1.930 1.328 C5 A1JRZ 29 A1JRZ C6 C27 C 0 1 Y N N N N N 23.743 -4.029 -15.878 -1.854 -1.772 2.698 C6 A1JRZ 30 A1JRZ N1 N3 N 0 1 N N N N N N 16.895 -4.459 -14.504 -4.611 2.227 2.093 N1 A1JRZ 31 A1JRZ N2 N4 N 0 1 N N N N N N 21.263 -3.611 -14.429 -1.806 -0.067 -0.229 N2 A1JRZ 32 A1JRZ N3 N5 N 0 1 Y N N N N N 24.483 -1.409 -9.920 3.528 0.111 -0.137 N3 A1JRZ 33 A1JRZ N4 N6 N 0 1 Y N N N N N 26.261 -2.299 -9.036 4.703 -1.679 -0.562 N4 A1JRZ 34 A1JRZ N7 N7 N 0 1 N N N N N N 26.868 -1.864 -6.104 7.636 -2.002 0.301 N7 A1JRZ 35 A1JRZ O1 O2 O 0 1 N N N N N N 22.812 -2.422 -11.215 1.150 0.323 -0.200 O1 A1JRZ 36 A1JRZ O2 O3 O 0 1 N N N N N N 24.127 0.713 -12.330 3.005 3.233 -0.995 O2 A1JRZ 37 A1JRZ O3 O4 O 0 1 N N N N N N 21.989 -0.111 -13.597 0.548 3.518 -1.602 O3 A1JRZ 38 A1JRZ O5 O5 O 0 1 N N N N N N 15.451 -2.854 -16.015 -5.897 3.819 0.412 O5 A1JRZ 39 A1JRZ H3 H1 H 0 1 N N N N N N 17.448 -2.552 -13.815 -2.974 3.394 1.482 H3 A1JRZ 40 A1JRZ H5 H2 H 0 1 N N N N N N 19.013 -3.962 -16.027 -4.176 1.246 -0.320 H5 A1JRZ 41 A1JRZ H4 H3 H 0 1 N N N N N N 19.221 -2.220 -15.640 -2.842 2.324 -0.795 H4 A1JRZ 42 A1JRZ H6 H4 H 0 1 N N N N N N 19.698 -2.827 -13.253 -1.511 1.493 1.147 H6 A1JRZ 43 A1JRZ H7 H5 H 0 1 N N N N N N 19.539 -4.565 -13.677 -2.833 0.372 1.550 H7 A1JRZ 44 A1JRZ H33 H6 H 0 1 N N N N N N 16.438 -1.133 -17.039 -4.721 5.507 -0.813 H33 A1JRZ 45 A1JRZ H11 H7 H 0 1 N N N N N N 25.697 -3.377 -16.477 -2.631 -2.407 4.585 H11 A1JRZ 46 A1JRZ H12 H8 H 0 1 N N N N N N 26.438 -5.624 -17.124 -4.193 -4.033 3.601 H12 A1JRZ 47 A1JRZ H13 H9 H 0 1 N N N N N N 24.941 -7.542 -16.869 -4.296 -4.323 1.160 H13 A1JRZ 48 A1JRZ H14 H10 H 0 1 N N N N N N 22.893 -8.012 -13.913 -0.749 -3.460 -0.904 H14 A1JRZ 49 A1JRZ H16 H11 H 0 1 N N N N N N 19.971 -10.604 -15.667 -2.996 -3.464 -4.527 H16 A1JRZ 50 A1JRZ H17 H12 H 0 1 N N N N N N 20.113 -9.333 -17.768 -5.040 -2.912 -3.274 H17 A1JRZ 51 A1JRZ H18 H13 H 0 1 N N N N N N 21.649 -7.412 -17.946 -4.951 -2.627 -0.832 H18 A1JRZ 52 A1JRZ H20 H14 H 0 1 N N N N N N 21.695 -4.322 -12.477 -1.649 1.346 -1.776 H20 A1JRZ 53 A1JRZ H19 H15 H 0 1 N N N N N N 23.130 -3.861 -13.454 -0.681 -0.131 -2.002 H19 A1JRZ 54 A1JRZ H21 H16 H 0 1 N N N N N N 21.087 -1.893 -12.354 -0.134 1.927 0.190 H21 A1JRZ 55 A1JRZ H22 H17 H 0 1 N N N N N N 23.363 -1.607 -14.136 0.738 1.763 -2.700 H22 A1JRZ 56 A1JRZ H24 H18 H 0 1 N N N N N N 22.770 -0.397 -10.546 2.423 1.628 0.823 H24 A1JRZ 57 A1JRZ H25 H19 H 0 1 N N N N N N 25.709 -2.564 -11.122 2.692 -1.580 -1.211 H25 A1JRZ 58 A1JRZ H15 H20 H 0 1 N N N N N N 21.341 -9.925 -13.729 -0.856 -3.742 -3.345 H15 A1JRZ 59 A1JRZ H23 H21 H 0 1 N N N N N N 24.897 -1.223 -12.523 2.966 1.503 -2.150 H23 A1JRZ 60 A1JRZ H26 H22 H 0 1 N N N N N N 23.057 0.513 -6.159 7.051 2.052 1.982 H26 A1JRZ 61 A1JRZ H9 H23 H 0 1 N N N N N N 21.256 -5.726 -14.432 -0.234 -0.628 1.046 H9 A1JRZ 62 A1JRZ H8 H24 H 0 1 N N N N N N 20.743 -4.959 -15.973 -0.542 -1.743 -0.306 H8 A1JRZ 63 A1JRZ H10 H25 H 0 1 N N N N N N 23.411 -3.034 -15.621 -1.176 -1.054 3.135 H10 A1JRZ 64 A1JRZ H1 H26 H 0 1 N N N N N N 15.952 -4.358 -14.186 -4.896 2.892 2.797 H1 A1JRZ 65 A1JRZ H31 H27 H 0 1 N N N N N N 16.906 -4.988 -15.352 -5.408 1.745 1.707 H31 A1JRZ 66 A1JRZ H28 H30 H 0 1 N N N N N N 26.861 -1.592 -5.142 7.264 -2.758 -0.180 H28 A1JRZ 67 A1JRZ H27 H31 H 0 1 N N N N N N 26.853 -2.862 -6.169 8.556 -2.027 0.607 H27 A1JRZ 68 A1JRZ H29 H32 H 0 1 N N N N N N 24.804 0.968 -11.714 2.991 3.876 -1.717 H29 A1JRZ 69 A1JRZ H30 H33 H 0 1 N N N N N N 22.470 0.570 -14.053 0.988 4.095 -2.242 H30 A1JRZ 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JRZ N1 C1 SING N N 1 A1JRZ C1 C2 SING N N 2 A1JRZ C1 C27 SING N N 3 A1JRZ C2 C3 SING N N 4 A1JRZ C3 N2 SING N N 5 A1JRZ N2 C4 SING N N 6 A1JRZ N2 C17 SING N N 7 A1JRZ C4 C5 SING N N 8 A1JRZ C5 C6 DOUB Y N 9 A1JRZ C5 C10 SING Y N 10 A1JRZ C6 C7 SING Y N 11 A1JRZ C7 C8 DOUB Y N 12 A1JRZ C8 C9 SING Y N 13 A1JRZ C9 C10 DOUB Y N 14 A1JRZ C10 C11 SING N N 15 A1JRZ C11 C12 DOUB Y N 16 A1JRZ C11 C16 SING Y N 17 A1JRZ C12 C13 SING Y N 18 A1JRZ C13 C14 DOUB Y N 19 A1JRZ C14 C15 SING Y N 20 A1JRZ C15 C16 DOUB Y N 21 A1JRZ C17 C18 SING N N 22 A1JRZ C18 C19 SING N N 23 A1JRZ C18 O1 SING N N 24 A1JRZ C19 C20 SING N N 25 A1JRZ C19 O3 SING N N 26 A1JRZ C20 C21 SING N N 27 A1JRZ C20 O2 SING N N 28 A1JRZ C21 N3 SING N N 29 A1JRZ C21 O1 SING N N 30 A1JRZ N3 C22 SING Y N 31 A1JRZ N3 C26 SING Y N 32 A1JRZ C22 N4 DOUB Y N 33 A1JRZ N4 C23 SING Y N 34 A1JRZ C23 C24 DOUB Y N 35 A1JRZ C23 C26 SING Y N 36 A1JRZ C24 N5 SING Y N 37 A1JRZ C24 N7 SING N N 38 A1JRZ N5 C25 DOUB Y N 39 A1JRZ C25 N6 SING Y N 40 A1JRZ N6 C26 DOUB Y N 41 A1JRZ C27 O4 SING N N 42 A1JRZ C27 O5 DOUB N N 43 A1JRZ C1 H3 SING N N 44 A1JRZ C2 H5 SING N N 45 A1JRZ C2 H4 SING N N 46 A1JRZ C3 H6 SING N N 47 A1JRZ C3 H7 SING N N 48 A1JRZ O4 H33 SING N N 49 A1JRZ C7 H11 SING N N 50 A1JRZ C8 H12 SING N N 51 A1JRZ C9 H13 SING N N 52 A1JRZ C12 H14 SING N N 53 A1JRZ C14 H16 SING N N 54 A1JRZ C15 H17 SING N N 55 A1JRZ C16 H18 SING N N 56 A1JRZ C17 H20 SING N N 57 A1JRZ C17 H19 SING N N 58 A1JRZ C18 H21 SING N N 59 A1JRZ C19 H22 SING N N 60 A1JRZ C21 H24 SING N N 61 A1JRZ C22 H25 SING N N 62 A1JRZ C13 H15 SING N N 63 A1JRZ C20 H23 SING N N 64 A1JRZ C25 H26 SING N N 65 A1JRZ C4 H9 SING N N 66 A1JRZ C4 H8 SING N N 67 A1JRZ C6 H10 SING N N 68 A1JRZ N1 H1 SING N N 69 A1JRZ N1 H31 SING N N 70 A1JRZ N7 H28 SING N N 71 A1JRZ N7 H27 SING N N 72 A1JRZ O2 H29 SING N N 73 A1JRZ O3 H30 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JRZ InChI InChI 1.06 "InChI=1S/C27H31N7O5/c28-19(27(37)38)10-11-33(12-17-8-4-5-9-18(17)16-6-2-1-3-7-16)13-20-22(35)23(36)26(39-20)34-15-32-21-24(29)30-14-31-25(21)34/h1-9,14-15,19-20,22-23,26,35-36H,10-13,28H2,(H,37,38)(H2,29,30,31)/t19-,20+,22+,23+,26+/m0/s1" A1JRZ InChIKey InChI 1.06 VQVYYKDXHLLBPZ-CIPJCTFPSA-N A1JRZ SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)Cc4ccccc4c5ccccc5)C(O)=O" A1JRZ SMILES CACTVS 3.385 "N[CH](CCN(C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)Cc4ccccc4c5ccccc5)C(O)=O" A1JRZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccccc2CN(CC[C@@H](C(=O)O)N)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" A1JRZ SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccccc2CN(CCC(C(=O)O)N)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # _pdbx_chem_comp_identifier.comp_id A1JRZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(2-phenylphenyl)methyl]amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JRZ "Create component" 2025-10-13 PDBE A1JRZ "Initial release" 2026-10-28 RCSB #