data_A1JS8 # _chem_comp.id A1JS8 _chem_comp.name Cabozantinib _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H24 F N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;~{N}1-[4-(6,7-dimethoxyquinolin-4-yl)oxyphenyl]-~{N}1'-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide; ONIQOQHATWINJY-UHFFFAOYSA-N ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-24 _chem_comp.pdbx_modified_date 2026-02-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 501.506 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JS8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9T2V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JS8 N1 N1 N 0 1 N N N N N N 9.785 -13.962 -29.253 2.535 -1.393 -0.464 N1 A1JS8 1 A1JS8 C7 C1 C 0 1 Y N N N N N 9.158 -17.843 -30.700 -1.617 -1.006 -0.502 C7 A1JS8 2 A1JS8 C8 C2 C 0 1 Y N N N N N 9.132 -16.787 -31.600 -0.905 -0.957 -1.692 C8 A1JS8 3 A1JS8 N2 N2 N 0 1 N N N N N N 10.562 -10.644 -26.783 5.053 -0.111 -0.046 N2 A1JS8 4 A1JS8 C9 C3 C 0 1 Y N N N N N 9.334 -15.495 -31.147 0.470 -1.085 -1.680 C9 A1JS8 5 A1JS8 O1 O1 O 0 1 N N N N N N 8.972 -19.147 -31.150 -2.971 -0.887 -0.516 O1 A1JS8 6 A1JS8 C1 C4 C 0 1 Y N N N N N 9.100 -24.129 -30.981 -7.644 0.840 0.224 C1 A1JS8 7 A1JS8 C5 C5 C 0 1 Y N N N N N 11.331 -19.659 -30.938 -2.704 1.395 0.128 C5 A1JS8 8 A1JS8 C6 C6 C 0 1 Y N N N N N 10.017 -20.028 -31.036 -3.509 0.302 -0.145 C6 A1JS8 9 A1JS8 C4 C7 C 0 1 Y N N N N N 12.283 -20.663 -30.846 -3.283 2.599 0.504 C4 A1JS8 10 A1JS8 O4 O2 O 0 1 N N N N N N 6.796 -23.729 -31.142 -7.984 -1.437 -0.415 O4 A1JS8 11 A1JS8 C3 C8 C 0 1 Y N N N N N 10.706 -22.333 -30.937 -5.421 1.723 0.364 C3 A1JS8 12 A1JS8 O3 O3 O 0 1 N N N N N N 10.384 -12.862 -27.011 6.675 -1.450 0.660 O3 A1JS8 13 A1JS8 C2 C9 C 0 1 Y N N N N N 10.399 -23.711 -30.915 -6.811 1.889 0.483 C2 A1JS8 14 A1JS8 F F1 F 0 1 N N N N N N 11.627 -10.975 -21.382 8.483 4.208 -0.269 F A1JS8 15 A1JS8 C19 C10 C 0 1 Y N N N N N 11.382 -10.870 -22.716 7.643 3.151 -0.214 C19 A1JS8 16 A1JS8 C18 C11 C 0 1 Y N N N N N 12.163 -11.590 -23.581 6.491 3.142 -0.982 C18 A1JS8 17 A1JS8 C17 C12 C 0 1 Y N N N N N 11.896 -11.500 -24.937 5.632 2.063 -0.928 C17 A1JS8 18 A1JS8 C20 C13 C 0 1 Y N N N N N 10.358 -10.058 -23.131 7.938 2.075 0.606 C20 A1JS8 19 A1JS8 C21 C14 C 0 1 Y N N N N N 10.096 -9.972 -24.487 7.082 0.993 0.664 C21 A1JS8 20 A1JS8 C16 C15 C 0 1 Y N N N N N 10.858 -10.696 -25.399 5.923 0.985 -0.102 C16 A1JS8 21 A1JS8 C15 C16 C 0 1 N N N N N N 10.336 -11.747 -27.512 5.517 -1.321 0.322 C15 A1JS8 22 A1JS8 C12 C17 C 0 1 N N N N N N 10.002 -11.561 -28.995 4.597 -2.515 0.315 C12 A1JS8 23 A1JS8 C14 C18 C 0 1 N N N N N N 9.174 -10.321 -29.339 4.998 -3.710 -0.552 C14 A1JS8 24 A1JS8 C13 C19 C 0 1 N N N N N N 10.610 -10.353 -29.716 5.103 -3.801 0.971 C13 A1JS8 25 A1JS8 C11 C20 C 0 1 N N N N N N 9.699 -12.762 -29.871 3.128 -2.204 0.435 C11 A1JS8 26 A1JS8 O2 O4 O 0 1 N N N N N N 9.398 -12.605 -31.046 2.478 -2.683 1.340 O2 A1JS8 27 A1JS8 C10 C21 C 0 1 Y N N N N N 9.563 -15.250 -29.792 1.140 -1.263 -0.477 C10 A1JS8 28 A1JS8 C22 C22 C 0 1 Y N N N N N 9.583 -16.317 -28.901 0.427 -1.311 0.714 C22 A1JS8 29 A1JS8 C23 C23 C 0 1 Y N N N N N 9.380 -17.608 -29.351 -0.948 -1.183 0.700 C23 A1JS8 30 A1JS8 N N3 N 0 1 Y N N N N N 12.020 -21.960 -30.846 -4.584 2.737 0.612 N A1JS8 31 A1JS8 C24 C24 C 0 1 Y N N N N N 9.659 -21.393 -31.034 -4.907 0.463 -0.026 C24 A1JS8 32 A1JS8 C25 C25 C 0 1 Y N N N N N 8.330 -21.845 -31.106 -5.787 -0.599 -0.287 C25 A1JS8 33 A1JS8 C26 C26 C 0 1 Y N N N N N 8.051 -23.184 -31.079 -7.132 -0.408 -0.162 C26 A1JS8 34 A1JS8 C27 C27 C 0 1 N N N N N N 5.669 -22.862 -30.949 -7.401 -2.682 -0.803 C27 A1JS8 35 A1JS8 O O5 O 0 1 N N N N N N 8.693 -25.433 -30.950 -8.988 1.004 0.346 O A1JS8 36 A1JS8 C C28 C 0 1 N N N N N N 9.673 -26.445 -31.171 -9.449 2.295 0.748 C A1JS8 37 A1JS8 H8 H1 H 0 1 N N N N N N 10.039 -13.935 -28.286 3.074 -0.897 -1.099 H8 A1JS8 38 A1JS8 H6 H2 H 0 1 N N N N N N 8.955 -16.973 -32.649 -1.426 -0.819 -2.628 H6 A1JS8 39 A1JS8 H13 H3 H 0 1 N N N N N N 10.520 -9.752 -27.233 4.116 0.002 -0.271 H13 A1JS8 40 A1JS8 H7 H4 H 0 1 N N N N N N 9.314 -14.672 -31.846 1.024 -1.047 -2.606 H7 A1JS8 41 A1JS8 H5 H5 H 0 1 N N N N N N 11.618 -18.618 -30.932 -1.630 1.311 0.048 H5 A1JS8 42 A1JS8 H4 H6 H 0 1 N N N N N N 13.318 -20.364 -30.768 -2.646 3.445 0.715 H4 A1JS8 43 A1JS8 H3 H7 H 0 1 N N N N N N 11.195 -24.438 -30.846 -7.219 2.844 0.779 H3 A1JS8 44 A1JS8 H15 H8 H 0 1 N N N N N N 12.966 -12.212 -23.215 6.264 3.981 -1.624 H15 A1JS8 45 A1JS8 H14 H9 H 0 1 N N N N N N 12.497 -12.057 -25.640 4.733 2.057 -1.527 H14 A1JS8 46 A1JS8 H16 H10 H 0 1 N N N N N N 9.771 -9.499 -22.417 8.839 2.082 1.202 H16 A1JS8 47 A1JS8 H17 H11 H 0 1 N N N N N N 9.295 -9.339 -24.840 7.312 0.154 1.303 H17 A1JS8 48 A1JS8 H11 H12 H 0 1 N N N N N N 8.834 -9.650 -28.536 4.199 -4.272 -1.036 H11 A1JS8 49 A1JS8 H12 H13 H 0 1 N N N N N N 8.402 -10.378 -30.120 5.927 -3.633 -1.117 H12 A1JS8 50 A1JS8 H10 H14 H 0 1 N N N N N N 11.328 -9.707 -29.191 6.101 -3.783 1.409 H10 A1JS8 51 A1JS8 H9 H15 H 0 1 N N N N N N 10.896 -10.435 -30.775 4.373 -4.422 1.490 H9 A1JS8 52 A1JS8 H18 H16 H 0 1 N N N N N N 9.758 -16.136 -27.851 0.948 -1.450 1.650 H18 A1JS8 53 A1JS8 H19 H17 H 0 1 N N N N N N 9.394 -18.432 -28.654 -1.502 -1.222 1.626 H19 A1JS8 54 A1JS8 H20 H18 H 0 1 N N N N N N 7.524 -21.131 -31.183 -5.401 -1.563 -0.585 H20 A1JS8 55 A1JS8 H21 H19 H 0 1 N N N N N N 4.739 -23.445 -31.029 -6.741 -3.037 -0.012 H21 A1JS8 56 A1JS8 H22 H20 H 0 1 N N N N N N 5.728 -22.401 -29.952 -8.190 -3.415 -0.974 H22 A1JS8 57 A1JS8 H23 H21 H 0 1 N N N N N N 5.676 -22.076 -31.718 -6.829 -2.544 -1.721 H23 A1JS8 58 A1JS8 H H22 H 0 1 N N N N N N 9.197 -27.435 -31.116 -9.034 2.542 1.725 H A1JS8 59 A1JS8 H1 H23 H 0 1 N N N N N N 10.122 -26.309 -32.166 -9.128 3.039 0.019 H1 A1JS8 60 A1JS8 H2 H24 H 0 1 N N N N N N 10.456 -26.371 -30.402 -10.538 2.290 0.807 H2 A1JS8 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JS8 C O SING N N 1 A1JS8 O C1 SING N N 2 A1JS8 C1 C2 DOUB Y N 3 A1JS8 C2 C3 SING Y N 4 A1JS8 C3 N DOUB Y N 5 A1JS8 N C4 SING Y N 6 A1JS8 C4 C5 DOUB Y N 7 A1JS8 C5 C6 SING Y N 8 A1JS8 C6 O1 SING N N 9 A1JS8 O1 C7 SING N N 10 A1JS8 C7 C8 DOUB Y N 11 A1JS8 C8 C9 SING Y N 12 A1JS8 C9 C10 DOUB Y N 13 A1JS8 C10 N1 SING N N 14 A1JS8 N1 C11 SING N N 15 A1JS8 O2 C11 DOUB N N 16 A1JS8 C11 C12 SING N N 17 A1JS8 C12 C13 SING N N 18 A1JS8 C13 C14 SING N N 19 A1JS8 C14 C12 SING N N 20 A1JS8 C12 C15 SING N N 21 A1JS8 O3 C15 DOUB N N 22 A1JS8 C15 N2 SING N N 23 A1JS8 N2 C16 SING N N 24 A1JS8 C16 C17 DOUB Y N 25 A1JS8 C17 C18 SING Y N 26 A1JS8 C18 C19 DOUB Y N 27 A1JS8 C19 F SING N N 28 A1JS8 C20 C19 SING Y N 29 A1JS8 C21 C20 DOUB Y N 30 A1JS8 C16 C21 SING Y N 31 A1JS8 C22 C10 SING Y N 32 A1JS8 C23 C22 DOUB Y N 33 A1JS8 C7 C23 SING Y N 34 A1JS8 C24 C6 DOUB Y N 35 A1JS8 C3 C24 SING Y N 36 A1JS8 C25 C24 SING Y N 37 A1JS8 C26 C25 DOUB Y N 38 A1JS8 C1 C26 SING Y N 39 A1JS8 O4 C26 SING N N 40 A1JS8 C27 O4 SING N N 41 A1JS8 N1 H8 SING N N 42 A1JS8 C8 H6 SING N N 43 A1JS8 N2 H13 SING N N 44 A1JS8 C9 H7 SING N N 45 A1JS8 C5 H5 SING N N 46 A1JS8 C4 H4 SING N N 47 A1JS8 C2 H3 SING N N 48 A1JS8 C18 H15 SING N N 49 A1JS8 C17 H14 SING N N 50 A1JS8 C20 H16 SING N N 51 A1JS8 C21 H17 SING N N 52 A1JS8 C14 H11 SING N N 53 A1JS8 C14 H12 SING N N 54 A1JS8 C13 H10 SING N N 55 A1JS8 C13 H9 SING N N 56 A1JS8 C22 H18 SING N N 57 A1JS8 C23 H19 SING N N 58 A1JS8 C25 H20 SING N N 59 A1JS8 C27 H21 SING N N 60 A1JS8 C27 H22 SING N N 61 A1JS8 C27 H23 SING N N 62 A1JS8 C H SING N N 63 A1JS8 C H1 SING N N 64 A1JS8 C H2 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JS8 InChI InChI 1.06 "InChI=1S/C28H24FN3O5/c1-35-24-15-21-22(16-25(24)36-2)30-14-11-23(21)37-20-9-7-19(8-10-20)32-27(34)28(12-13-28)26(33)31-18-5-3-17(29)4-6-18/h3-11,14-16H,12-13H2,1-2H3,(H,31,33)(H,32,34)" A1JS8 InChIKey InChI 1.06 ONIQOQHATWINJY-UHFFFAOYSA-N A1JS8 SMILES_CANONICAL CACTVS 3.385 "COc1cc2nccc(Oc3ccc(NC(=O)C4(CC4)C(=O)Nc5ccc(F)cc5)cc3)c2cc1OC" A1JS8 SMILES CACTVS 3.385 "COc1cc2nccc(Oc3ccc(NC(=O)C4(CC4)C(=O)Nc5ccc(F)cc5)cc3)c2cc1OC" A1JS8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc2c(ccnc2cc1OC)Oc3ccc(cc3)NC(=O)C4(CC4)C(=O)Nc5ccc(cc5)F" A1JS8 SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc2c(ccnc2cc1OC)Oc3ccc(cc3)NC(=O)C4(CC4)C(=O)Nc5ccc(cc5)F" # _pdbx_chem_comp_identifier.comp_id A1JS8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}1-[4-(6,7-dimethoxyquinolin-4-yl)oxyphenyl]-~{N}1'-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 A1JS8 "~{N}1-[4-(6,7-dimethoxyquinolin-4-yl)oxyphenyl]-~{N}1'-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide" AUTHOR IUPAC 2 A1JS8 ONIQOQHATWINJY-UHFFFAOYSA-N AUTHOR InChIKey # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JS8 "Create component" 2025-10-24 PDBE A1JS8 "Initial release" 2026-02-18 RCSB #