data_A1JSB # _chem_comp.id A1JSB _chem_comp.name "2-[[6-[[(3-fluoranyl-1-bicyclo[1.1.1]pentanyl)methylamino]methyl]imidazo[1,2-a]pyridin-2-yl]methyl]-5-(7-oxa-2-azaspiro[3.5]nonan-2-yl)-2,7-naphthyridin-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H33 F N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-14 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 528.620 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JSB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SZ6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JSB C10 C1 C 0 1 N N N N N N -41.664 42.506 22.552 7.304 1.786 0.285 C10 A1JSB 1 A1JSB C15 C2 C 0 1 N N N N N N -42.756 43.496 22.997 8.412 1.882 1.332 C15 A1JSB 2 A1JSB C17 C3 C 0 1 Y N N N N N -41.099 38.972 25.289 3.893 -1.023 -0.333 C17 A1JSB 3 A1JSB C21 C4 C 0 1 N N N N N N -42.950 35.278 26.679 0.156 -2.336 -1.894 C21 A1JSB 4 A1JSB C22 C5 C 0 1 Y N N N N N -43.078 34.231 25.567 -0.964 -1.763 -1.066 C22 A1JSB 5 A1JSB C26 C6 C 0 1 Y N N N N N -43.070 30.878 22.299 -4.324 0.414 0.966 C26 A1JSB 6 A1JSB C02 C7 C 0 1 N N N N N N -41.387 37.164 26.991 2.040 -2.660 -0.406 C02 A1JSB 7 A1JSB C03 C8 C 0 1 Y N N N N N -40.749 38.404 26.545 3.327 -2.229 0.147 C03 A1JSB 8 A1JSB C04 C9 C 0 1 Y N N N N N -39.766 39.049 27.402 4.011 -2.956 1.119 C04 A1JSB 9 A1JSB C06 C10 C 0 1 Y N N N N N -39.471 40.765 25.802 5.727 -1.398 1.158 C06 A1JSB 10 A1JSB C07 C11 C 0 1 Y N N N N N -40.412 40.217 24.887 5.125 -0.607 0.194 C07 A1JSB 11 A1JSB C09 C12 C 0 1 N N N N N N -41.919 40.995 22.774 5.915 1.521 0.879 C09 A1JSB 12 A1JSB C11 C13 C 0 1 N N N N N N -41.290 42.608 21.094 7.335 2.941 -0.715 C11 A1JSB 13 A1JSB C12 C14 C 0 1 N N N N N N -42.519 42.574 20.189 8.741 3.037 -1.317 C12 A1JSB 14 A1JSB C14 C15 C 0 1 N N N N N N -43.942 43.538 21.973 9.759 2.037 0.615 C14 A1JSB 15 A1JSB C16 C16 C 0 1 N N N N N N -40.363 42.363 23.359 7.194 0.404 -0.372 C16 A1JSB 16 A1JSB C18 C17 C 0 1 N N N N N N -42.107 38.257 24.460 3.172 -0.272 -1.355 C18 A1JSB 17 A1JSB C19 C18 C 0 1 N N N N N N -42.697 37.073 24.916 1.995 -0.740 -1.808 C19 A1JSB 18 A1JSB C23 C19 C 0 1 Y N N N N N -42.168 33.172 25.254 -1.642 -0.626 -1.336 C23 A1JSB 19 A1JSB C25 C20 C 0 1 Y N N N N N -42.324 31.370 23.384 -3.515 0.494 -0.112 C25 A1JSB 20 A1JSB C27 C21 C 0 1 N N N N N N -42.573 29.632 21.523 -5.361 1.480 1.206 C27 A1JSB 21 A1JSB C29 C22 C 0 1 N N N N N N -42.535 27.144 21.650 -7.686 2.063 0.861 C29 A1JSB 22 A1JSB C30 C23 C 0 1 N N N N N N -42.531 25.962 22.555 -9.008 1.577 0.264 C30 A1JSB 23 A1JSB C31 C24 C 0 1 N N N N N N -41.482 25.649 23.712 -9.833 0.314 0.617 C31 A1JSB 24 A1JSB C32 C25 C 0 1 N N N N N N -42.550 24.467 23.686 -10.698 0.941 -0.505 C32 A1JSB 25 A1JSB C34 C26 C 0 1 N N N N N N -43.696 25.573 23.548 -10.381 2.284 0.238 C34 A1JSB 26 A1JSB C35 C27 C 0 1 N N N N N N -42.435 24.468 22.089 -9.339 1.203 -1.202 C35 A1JSB 27 A1JSB C36 C28 C 0 1 Y N N N N N -44.329 31.534 21.934 -4.203 -0.659 1.865 C36 A1JSB 28 A1JSB C37 C29 C 0 1 Y N N N N N -44.736 32.643 22.670 -3.265 -1.619 1.645 C37 A1JSB 29 A1JSB C38 C30 C 0 1 Y N N N N N -43.941 33.151 23.806 -2.429 -1.523 0.515 C38 A1JSB 30 A1JSB F33 F1 F 0 1 N N N N N N -42.583 23.411 24.469 -11.910 0.492 -1.039 F33 A1JSB 31 A1JSB N05 N1 N 0 1 Y N N N N N -39.153 40.184 27.028 5.166 -2.519 1.579 N05 A1JSB 32 A1JSB N08 N2 N 0 1 N N N N N N -40.691 40.905 23.677 5.729 0.574 -0.243 N08 A1JSB 33 A1JSB N20 N3 N 0 1 N N N N N N -42.339 36.523 26.168 1.443 -1.900 -1.346 N20 A1JSB 34 A1JSB N24 N4 N 0 1 Y N N N N N -42.729 32.489 24.138 -2.571 -0.464 -0.344 N24 A1JSB 35 A1JSB N28 N5 N 0 1 N N N N N N -42.801 28.425 22.402 -6.648 1.046 0.645 N28 A1JSB 36 A1JSB N39 N6 N 0 1 Y N N N N N -44.127 34.203 24.672 -1.456 -2.296 0.055 N39 A1JSB 37 A1JSB O01 O1 O 0 1 N N N N N N -41.120 36.669 28.078 1.517 -3.691 -0.022 O01 A1JSB 38 A1JSB O13 O2 O 0 1 N N N N N N -43.487 43.558 20.586 9.699 3.161 -0.264 O13 A1JSB 39 A1JSB H151 H1 H 0 0 N N N N N N -42.317 44.501 23.077 8.237 2.747 1.971 H151 A1JSB 40 A1JSB H152 H2 H 0 0 N N N N N N -43.142 43.185 23.979 8.423 0.975 1.936 H152 A1JSB 41 A1JSB H211 H3 H 0 0 N N N N N N -42.320 34.872 27.484 0.103 -3.425 -1.873 H211 A1JSB 42 A1JSB H212 H4 H 0 0 N N N N N N -43.950 35.505 27.076 0.063 -1.988 -2.923 H212 A1JSB 43 A1JSB H041 H5 H 0 0 N N N N N N -39.525 38.607 28.357 3.594 -3.878 1.496 H041 A1JSB 44 A1JSB H061 H6 H 0 0 N N N N N N -38.974 41.685 25.531 6.676 -1.094 1.574 H061 A1JSB 45 A1JSB H091 H7 H 0 0 N N N N N N -41.846 40.390 21.858 5.939 1.044 1.859 H091 A1JSB 46 A1JSB H092 H8 H 0 0 N N N N N N -42.867 40.772 23.285 5.249 2.384 0.842 H092 A1JSB 47 A1JSB H111 H9 H 0 0 N N N N N N -40.634 41.764 20.835 6.610 2.756 -1.508 H111 A1JSB 48 A1JSB H112 H10 H 0 0 N N N N N N -40.753 43.554 20.930 7.090 3.872 -0.205 H112 A1JSB 49 A1JSB H121 H11 H 0 0 N N N N N N -42.207 42.776 19.154 8.952 2.137 -1.896 H121 A1JSB 50 A1JSB H122 H12 H 0 0 N N N N N N -42.978 41.576 20.246 8.800 3.909 -1.968 H122 A1JSB 51 A1JSB H141 H13 H 0 0 N N N N N N -44.538 44.443 22.161 10.547 2.193 1.352 H141 A1JSB 52 A1JSB H142 H14 H 0 0 N N N N N N -44.570 42.648 22.125 9.970 1.136 0.040 H142 A1JSB 53 A1JSB H161 H15 H 0 0 N N N N N N -39.450 42.494 22.759 7.545 0.379 -1.403 H161 A1JSB 54 A1JSB H162 H16 H 0 0 N N N N N N -40.315 43.012 24.246 7.600 -0.405 0.236 H162 A1JSB 55 A1JSB H181 H17 H 0 0 N N N N N N -42.386 38.656 23.496 3.579 0.649 -1.745 H181 A1JSB 56 A1JSB H191 H18 H 0 0 N N N N N N -43.434 36.574 24.305 1.469 -0.178 -2.565 H191 A1JSB 57 A1JSB H231 H19 H 0 0 N N N N N N -41.244 32.938 25.761 -1.482 0.032 -2.178 H231 A1JSB 58 A1JSB H251 H20 H 0 0 N N N N N N -41.404 30.871 23.650 -3.617 1.323 -0.796 H251 A1JSB 59 A1JSB H271 H21 H 0 0 N N N N N N -41.501 29.734 21.297 -5.470 1.646 2.278 H271 A1JSB 60 A1JSB H272 H22 H 0 0 N N N N N N -43.137 29.525 20.585 -5.049 2.406 0.724 H272 A1JSB 61 A1JSB H291 H23 H 0 0 N N N N N N -43.319 27.008 20.890 -7.389 2.994 0.377 H291 A1JSB 62 A1JSB H292 H24 H 0 0 N N N N N N -41.555 27.218 21.157 -7.811 2.234 1.930 H292 A1JSB 63 A1JSB H311 H25 H 0 0 N N N N N N -40.448 25.414 23.418 -9.358 -0.632 0.357 H311 A1JSB 64 A1JSB H312 H26 H 0 0 N N N N N N -41.472 26.313 24.589 -10.286 0.322 1.608 H312 A1JSB 65 A1JSB H341 H27 H 0 0 N N N N N N -44.658 25.263 23.114 -10.862 2.389 1.210 H341 A1JSB 66 A1JSB H342 H28 H 0 0 N N N N N N -43.878 26.233 24.409 -10.422 3.185 -0.374 H342 A1JSB 67 A1JSB H351 H29 H 0 0 N N N N N N -41.488 24.130 21.644 -9.335 2.039 -1.902 H351 A1JSB 68 A1JSB H352 H30 H 0 0 N N N N N N -43.278 24.056 21.515 -8.834 0.312 -1.575 H352 A1JSB 69 A1JSB H361 H31 H 0 0 N N N N N N -44.927 31.166 21.113 -4.851 -0.721 2.726 H361 A1JSB 70 A1JSB H371 H32 H 0 0 N N N N N N -45.655 33.144 22.404 -3.163 -2.449 2.330 H371 A1JSB 71 A1JSB H1 H33 H 0 1 N N N N N N -42.187 28.474 23.190 -6.558 0.823 -0.335 H1 A1JSB 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JSB C02 O01 DOUB N N 1 A1JSB C03 C02 SING N N 2 A1JSB C04 C03 DOUB Y N 3 A1JSB N05 C04 SING Y N 4 A1JSB C06 N05 DOUB Y N 5 A1JSB C07 C06 SING Y N 6 A1JSB C09 N08 SING N N 7 A1JSB C10 C09 SING N N 8 A1JSB C12 C11 SING N N 9 A1JSB O13 C12 SING N N 10 A1JSB C14 O13 SING N N 11 A1JSB C15 C14 SING N N 12 A1JSB C11 C10 SING N N 13 A1JSB C16 C10 SING N N 14 A1JSB N08 C07 SING N N 15 A1JSB C17 C07 DOUB Y N 16 A1JSB C18 C17 SING N N 17 A1JSB C19 C18 DOUB N N 18 A1JSB N20 C19 SING N N 19 A1JSB C21 N20 SING N N 20 A1JSB C22 C21 SING N N 21 A1JSB C23 C22 DOUB Y N 22 A1JSB N24 C23 SING Y N 23 A1JSB C25 N24 SING Y N 24 A1JSB C26 C25 DOUB Y N 25 A1JSB N28 C27 SING N N 26 A1JSB C29 N28 SING N N 27 A1JSB C30 C29 SING N N 28 A1JSB C31 C30 SING N N 29 A1JSB C32 C31 SING N N 30 A1JSB F33 C32 SING N N 31 A1JSB C34 C32 SING N N 32 A1JSB C35 C32 SING N N 33 A1JSB C27 C26 SING N N 34 A1JSB C36 C26 SING Y N 35 A1JSB C37 C36 DOUB Y N 36 A1JSB C38 C37 SING Y N 37 A1JSB N39 C38 DOUB Y N 38 A1JSB C02 N20 SING N N 39 A1JSB C03 C17 SING Y N 40 A1JSB N08 C16 SING N N 41 A1JSB C10 C15 SING N N 42 A1JSB C22 N39 SING Y N 43 A1JSB N24 C38 SING Y N 44 A1JSB C30 C34 SING N N 45 A1JSB C30 C35 SING N N 46 A1JSB C15 H151 SING N N 47 A1JSB C15 H152 SING N N 48 A1JSB C21 H211 SING N N 49 A1JSB C21 H212 SING N N 50 A1JSB C04 H041 SING N N 51 A1JSB C06 H061 SING N N 52 A1JSB C09 H091 SING N N 53 A1JSB C09 H092 SING N N 54 A1JSB C11 H111 SING N N 55 A1JSB C11 H112 SING N N 56 A1JSB C12 H121 SING N N 57 A1JSB C12 H122 SING N N 58 A1JSB C14 H141 SING N N 59 A1JSB C14 H142 SING N N 60 A1JSB C16 H161 SING N N 61 A1JSB C16 H162 SING N N 62 A1JSB C18 H181 SING N N 63 A1JSB C19 H191 SING N N 64 A1JSB C23 H231 SING N N 65 A1JSB C25 H251 SING N N 66 A1JSB C27 H271 SING N N 67 A1JSB C27 H272 SING N N 68 A1JSB C29 H291 SING N N 69 A1JSB C29 H292 SING N N 70 A1JSB C31 H311 SING N N 71 A1JSB C31 H312 SING N N 72 A1JSB C34 H341 SING N N 73 A1JSB C34 H342 SING N N 74 A1JSB C35 H351 SING N N 75 A1JSB C35 H352 SING N N 76 A1JSB C36 H361 SING N N 77 A1JSB C37 H371 SING N N 78 A1JSB N28 H1 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JSB InChI InChI 1.06 "InChI=1S/C30H33FN6O2/c31-30-15-29(16-30,17-30)18-33-9-21-1-2-26-34-22(14-36(26)12-21)13-35-6-3-23-24(27(35)38)10-32-11-25(23)37-19-28(20-37)4-7-39-8-5-28/h1-3,6,10-12,14,33H,4-5,7-9,13,15-20H2/t29-,30+" A1JSB InChIKey InChI 1.06 ZQVDSGGDXUWGPM-RNPORBBMSA-N A1JSB SMILES_CANONICAL CACTVS 3.385 "FC12CC(CNCc3ccc4nc(CN5C=Cc6c(cncc6C5=O)N7CC8(CCOCC8)C7)cn4c3)(C1)C2" A1JSB SMILES CACTVS 3.385 "FC12CC(CNCc3ccc4nc(CN5C=Cc6c(cncc6C5=O)N7CC8(CCOCC8)C7)cn4c3)(C1)C2" A1JSB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2nc(cn2cc1CNCC34CC(C3)(C4)F)CN5C=Cc6c(cncc6N7CC8(C7)CCOCC8)C5=O" A1JSB SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2nc(cn2cc1CNCC34CC(C3)(C4)F)CN5C=Cc6c(cncc6N7CC8(C7)CCOCC8)C5=O" # _pdbx_chem_comp_identifier.comp_id A1JSB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[6-[[(3-fluoranyl-1-bicyclo[1.1.1]pentanyl)methylamino]methyl]imidazo[1,2-a]pyridin-2-yl]methyl]-5-(7-oxa-2-azaspiro[3.5]nonan-2-yl)-2,7-naphthyridin-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JSB "Create component" 2025-10-14 PDBE A1JSB "Initial release" 2026-11-04 RCSB #