data_A1JSC # _chem_comp.id A1JSC _chem_comp.name "~{N}-[[4-[2-[2-methylpropyl-[[(2~{R})-piperidin-2-yl]methyl]amino]-2-oxidanylidene-ethyl]phenyl]methyl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H35 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-14 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 489.609 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JSC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SZ8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JSC C10 C1 C 0 1 N N N N N N 42.143 -24.176 23.861 -7.406 -3.218 1.630 C10 A1JSC 1 A1JSC N12 N1 N 0 1 N N N N N N 42.482 -26.546 23.127 -5.823 -1.477 0.951 N12 A1JSC 2 A1JSC C13 C2 C 0 1 N N N N N N 43.564 -29.458 22.430 -3.987 0.470 -0.389 C13 A1JSC 3 A1JSC C15 C3 C 0 1 N N N N N N 42.770 -30.782 22.450 -2.763 1.225 0.063 C15 A1JSC 4 A1JSC C17 C4 C 0 1 Y N N N N N 44.130 -32.877 23.083 -0.888 0.556 -1.454 C17 A1JSC 5 A1JSC C20 C5 C 0 1 N N N N N N 44.402 -35.127 26.220 1.950 -1.909 -1.104 C20 A1JSC 6 A1JSC C22 C6 C 0 1 N N N N N N 42.469 -36.830 26.499 4.365 -1.725 -0.834 C22 A1JSC 7 A1JSC C24 C7 C 0 1 N N N N N N 41.711 -38.052 25.927 5.575 -0.988 -0.387 C24 A1JSC 8 A1JSC C26 C8 C 0 1 N N N N N N 40.037 -39.853 26.039 7.959 -0.824 -0.137 C26 A1JSC 9 A1JSC C01 C9 C 0 1 N N N N N N 44.338 -29.051 18.357 -6.522 3.265 -1.593 C01 A1JSC 10 A1JSC C02 C10 C 0 1 N N N N N N 43.145 -29.711 19.065 -5.307 3.409 -0.674 C02 A1JSC 11 A1JSC C03 C11 C 0 1 N N N N N N 42.068 -30.081 18.040 -5.328 4.789 -0.013 C03 A1JSC 12 A1JSC C04 C12 C 0 1 N N N N N N 42.531 -28.839 20.211 -5.352 2.326 0.405 C04 A1JSC 13 A1JSC C06 C13 C 0 1 N N N N N N 44.181 -27.243 21.315 -6.400 0.275 -0.659 C06 A1JSC 14 A1JSC C07 C14 C 0 1 N N R N N N 43.699 -26.175 22.379 -6.909 -0.605 0.485 C07 A1JSC 15 A1JSC C08 C15 C 0 1 N N N N N N 43.474 -24.767 21.791 -8.075 -1.463 -0.012 C08 A1JSC 16 A1JSC C09 C16 C 0 1 N N N N N N 43.187 -23.714 22.852 -8.568 -2.356 1.130 C09 A1JSC 17 A1JSC C11 C17 C 0 1 N N N N N N 42.327 -25.637 24.282 -6.259 -2.310 2.079 C11 A1JSC 18 A1JSC C16 C18 C 0 1 Y N N N N N 43.207 -31.886 23.409 -1.531 0.411 -0.239 C16 A1JSC 19 A1JSC C18 C19 C 0 1 Y N N N N N 44.509 -33.882 23.983 0.239 -0.194 -1.734 C18 A1JSC 20 A1JSC C19 C20 C 0 1 Y N N N N N 44.048 -33.943 25.300 0.722 -1.090 -0.799 C19 A1JSC 21 A1JSC C25 C21 C 0 1 N N N N N N 40.714 -38.699 26.608 6.835 -1.544 -0.569 C25 A1JSC 22 A1JSC C29 C22 C 0 1 N N N N N N 39.883 -41.379 24.076 8.864 1.090 0.865 C29 A1JSC 23 A1JSC C30 C23 C 0 1 N N N N N N 40.279 -41.782 22.840 8.715 2.302 1.446 C30 A1JSC 24 A1JSC C31 C24 C 0 1 N N N N N N 41.327 -41.066 22.184 7.436 2.847 1.622 C31 A1JSC 25 A1JSC C32 C25 C 0 1 N N N N N N 41.899 -39.993 22.783 6.345 2.150 1.197 C32 A1JSC 26 A1JSC C33 C26 C 0 1 N N N N N N 41.498 -39.529 24.101 6.520 0.890 0.593 C33 A1JSC 27 A1JSC C35 C27 C 0 1 Y N N N N N 43.075 -32.986 25.611 0.079 -1.235 0.417 C35 A1JSC 28 A1JSC C36 C28 C 0 1 Y N N N N N 42.705 -31.970 24.720 -1.044 -0.480 0.699 C36 A1JSC 29 A1JSC N05 N2 N 0 1 N N N N N N 43.409 -28.529 21.355 -5.211 1.008 -0.219 N05 A1JSC 30 A1JSC N21 N3 N 0 1 N N N N N N 43.623 -36.340 25.857 3.143 -1.182 -0.663 N21 A1JSC 31 A1JSC N28 N4 N 0 1 N N N N N N 40.471 -40.272 24.720 7.781 0.383 0.441 N28 A1JSC 32 A1JSC N34 N5 N 0 1 N N N N N N 42.097 -38.462 24.657 5.454 0.208 0.183 N34 A1JSC 33 A1JSC O14 O1 O 0 1 N N N N N N 44.308 -29.203 23.355 -3.870 -0.620 -0.906 O14 A1JSC 34 A1JSC O23 O2 O 0 1 N N N N N N 42.093 -36.371 27.565 4.477 -2.816 -1.355 O23 A1JSC 35 A1JSC O27 O3 O 0 1 N N N N N N 39.144 -40.495 26.572 9.081 -1.283 -0.280 O27 A1JSC 36 A1JSC H101 H1 H 0 0 N N N N N N 42.215 -23.541 24.756 -7.739 -3.826 2.472 H101 A1JSC 37 A1JSC H102 H2 H 0 0 N N N N N N 41.146 -24.063 23.411 -7.063 -3.869 0.826 H102 A1JSC 38 A1JSC H1 H3 H 0 1 N N N N N N 42.563 -27.488 23.451 -5.006 -0.937 1.195 H1 A1JSC 39 A1JSC H151 H5 H 0 0 N N N N N N 41.728 -30.531 22.699 -2.708 2.177 -0.464 H151 A1JSC 40 A1JSC H152 H6 H 0 0 N N N N N N 42.813 -31.201 21.434 -2.824 1.406 1.136 H152 A1JSC 41 A1JSC H171 H7 H 0 0 N N N N N N 44.571 -32.871 22.097 -1.268 1.253 -2.187 H171 A1JSC 42 A1JSC H201 H8 H 0 0 N N N N N N 44.175 -34.853 27.261 1.891 -2.862 -0.579 H201 A1JSC 43 A1JSC H202 H9 H 0 0 N N N N N N 45.475 -35.348 26.124 2.010 -2.088 -2.177 H202 A1JSC 44 A1JSC H011 H10 H 0 0 N N N N N N 45.106 -28.789 19.099 -6.489 4.037 -2.362 H011 A1JSC 45 A1JSC H012 H11 H 0 0 N N N N N N 44.762 -29.752 17.623 -6.506 2.282 -2.064 H012 A1JSC 46 A1JSC H013 H12 H 0 0 N N N N N N 44.000 -28.140 17.842 -7.435 3.373 -1.008 H013 A1JSC 47 A1JSC H021 H13 H 0 0 N N N N N N 43.505 -30.645 19.522 -4.393 3.301 -1.259 H021 A1JSC 48 A1JSC H031 H14 H 0 0 N N N N N N 41.218 -30.553 18.555 -6.242 4.897 0.572 H031 A1JSC 49 A1JSC H032 H15 H 0 0 N N N N N N 41.725 -29.172 17.524 -4.463 4.892 0.642 H032 A1JSC 50 A1JSC H033 H16 H 0 0 N N N N N N 42.487 -30.784 17.305 -5.296 5.561 -0.782 H033 A1JSC 51 A1JSC H041 H17 H 0 0 N N N N N N 42.212 -27.884 19.768 -4.537 2.482 1.112 H041 A1JSC 52 A1JSC H042 H18 H 0 0 N N N N N N 41.652 -29.373 20.601 -6.305 2.378 0.933 H042 A1JSC 53 A1JSC H061 H19 H 0 0 N N N N N N 44.074 -26.805 20.311 -6.146 -0.352 -1.514 H061 A1JSC 54 A1JSC H062 H20 H 0 0 N N N N N N 45.241 -27.469 21.506 -7.178 0.983 -0.946 H062 A1JSC 55 A1JSC H071 H21 H 0 0 N N N N N N 44.516 -26.082 23.109 -7.247 0.026 1.306 H071 A1JSC 56 A1JSC H081 H22 H 0 0 N N N N N N 44.378 -24.470 21.239 -8.887 -0.815 -0.343 H081 A1JSC 57 A1JSC H082 H23 H 0 0 N N N N N N 42.619 -24.809 21.100 -7.742 -2.084 -0.843 H082 A1JSC 58 A1JSC H091 H24 H 0 0 N N N N N N 44.121 -23.489 23.388 -9.370 -2.999 0.770 H091 A1JSC 59 A1JSC H092 H25 H 0 0 N N N N N N 42.820 -22.803 22.356 -8.937 -1.734 1.946 H092 A1JSC 60 A1JSC H111 H26 H 0 0 N N N N N N 43.226 -25.712 24.912 -6.599 -1.671 2.893 H111 A1JSC 61 A1JSC H112 H27 H 0 0 N N N N N N 41.446 -25.950 24.861 -5.424 -2.922 2.422 H112 A1JSC 62 A1JSC H181 H28 H 0 0 N N N N N N 45.191 -34.647 23.642 0.742 -0.080 -2.683 H181 A1JSC 63 A1JSC H251 H29 H 0 0 N N N N N N 40.425 -38.345 27.587 6.948 -2.512 -1.034 H251 A1JSC 64 A1JSC H291 H30 H 0 0 N N N N N N 39.096 -41.922 24.578 9.854 0.679 0.734 H291 A1JSC 65 A1JSC H301 H31 H 0 0 N N N N N N 39.810 -42.629 22.362 9.585 2.852 1.777 H301 A1JSC 66 A1JSC H311 H32 H 0 0 N N N N N N 41.665 -41.381 21.208 7.316 3.815 2.086 H311 A1JSC 67 A1JSC H321 H33 H 0 0 N N N N N N 42.682 -39.463 22.261 5.353 2.559 1.326 H321 A1JSC 68 A1JSC H351 H34 H 0 0 N N N N N N 42.591 -33.033 26.575 0.457 -1.934 1.148 H351 A1JSC 69 A1JSC H361 H35 H 0 0 N N N N N N 42.004 -31.219 25.054 -1.547 -0.594 1.648 H361 A1JSC 70 A1JSC H211 H36 H 0 0 N N N N N N 43.954 -36.865 25.073 3.054 -0.310 -0.247 H211 A1JSC 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JSC C02 C01 SING N N 1 A1JSC C03 C02 SING N N 2 A1JSC C04 C02 SING N N 3 A1JSC N05 C04 SING N N 4 A1JSC C07 C06 SING N N 5 A1JSC C08 C07 SING N N 6 A1JSC C09 C08 SING N N 7 A1JSC C10 C09 SING N N 8 A1JSC C11 C10 SING N N 9 A1JSC N12 C11 SING N N 10 A1JSC C06 N05 SING N N 11 A1JSC C13 N05 SING N N 12 A1JSC O14 C13 DOUB N N 13 A1JSC C15 C13 SING N N 14 A1JSC C16 C15 SING N N 15 A1JSC C17 C16 DOUB Y N 16 A1JSC C18 C17 SING Y N 17 A1JSC C19 C18 DOUB Y N 18 A1JSC N21 C20 SING N N 19 A1JSC C22 N21 SING N N 20 A1JSC O23 C22 DOUB N N 21 A1JSC C24 C22 SING N N 22 A1JSC C25 C24 DOUB N N 23 A1JSC C26 C25 SING N N 24 A1JSC O27 C26 DOUB N N 25 A1JSC N28 C26 SING N N 26 A1JSC C29 N28 SING N N 27 A1JSC C30 C29 DOUB N N 28 A1JSC C31 C30 SING N N 29 A1JSC C32 C31 DOUB N N 30 A1JSC C33 C32 SING N N 31 A1JSC N34 C33 DOUB N N 32 A1JSC C20 C19 SING N N 33 A1JSC C35 C19 SING Y N 34 A1JSC C36 C35 DOUB Y N 35 A1JSC C07 N12 SING N N 36 A1JSC C16 C36 SING Y N 37 A1JSC C24 N34 SING N N 38 A1JSC N28 C33 SING N N 39 A1JSC C10 H101 SING N N 40 A1JSC C10 H102 SING N N 41 A1JSC N12 H1 SING N N 42 A1JSC C15 H151 SING N N 43 A1JSC C15 H152 SING N N 44 A1JSC C17 H171 SING N N 45 A1JSC C20 H201 SING N N 46 A1JSC C20 H202 SING N N 47 A1JSC C01 H011 SING N N 48 A1JSC C01 H012 SING N N 49 A1JSC C01 H013 SING N N 50 A1JSC C02 H021 SING N N 51 A1JSC C03 H031 SING N N 52 A1JSC C03 H032 SING N N 53 A1JSC C03 H033 SING N N 54 A1JSC C04 H041 SING N N 55 A1JSC C04 H042 SING N N 56 A1JSC C06 H061 SING N N 57 A1JSC C06 H062 SING N N 58 A1JSC C07 H071 SING N N 59 A1JSC C08 H081 SING N N 60 A1JSC C08 H082 SING N N 61 A1JSC C09 H091 SING N N 62 A1JSC C09 H092 SING N N 63 A1JSC C11 H111 SING N N 64 A1JSC C11 H112 SING N N 65 A1JSC C18 H181 SING N N 66 A1JSC C25 H251 SING N N 67 A1JSC C29 H291 SING N N 68 A1JSC C30 H301 SING N N 69 A1JSC C31 H311 SING N N 70 A1JSC C32 H321 SING N N 71 A1JSC C35 H351 SING N N 72 A1JSC C36 H361 SING N N 73 A1JSC N21 H211 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JSC InChI InChI 1.06 "InChI=1S/C28H35N5O3/c1-20(2)18-32(19-23-7-3-5-13-29-23)26(34)15-21-9-11-22(12-10-21)17-30-28(36)24-16-27(35)33-14-6-4-8-25(33)31-24/h4,6,8-12,14,16,20,23,29H,3,5,7,13,15,17-19H2,1-2H3,(H,30,36)/t23-/m1/s1" A1JSC InChIKey InChI 1.06 KFVPVLDJZUPGLE-HSZRJFAPSA-N A1JSC SMILES_CANONICAL CACTVS 3.385 "CC(C)CN(C[C@H]1CCCCN1)C(=O)Cc2ccc(CNC(=O)C3=CC(=O)N4C=CC=CC4=N3)cc2" A1JSC SMILES CACTVS 3.385 "CC(C)CN(C[CH]1CCCCN1)C(=O)Cc2ccc(CNC(=O)C3=CC(=O)N4C=CC=CC4=N3)cc2" A1JSC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)CN(C[C@H]1CCCCN1)C(=O)Cc2ccc(cc2)CNC(=O)C3=CC(=O)N4C=CC=CC4=N3" A1JSC SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CN(CC1CCCCN1)C(=O)Cc2ccc(cc2)CNC(=O)C3=CC(=O)N4C=CC=CC4=N3" # _pdbx_chem_comp_identifier.comp_id A1JSC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[4-[2-[2-methylpropyl-[[(2~{R})-piperidin-2-yl]methyl]amino]-2-oxidanylidene-ethyl]phenyl]methyl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JSC "Create component" 2025-10-14 PDBE A1JSC "Initial release" 2026-11-04 RCSB #