data_A1JSD # _chem_comp.id A1JSD _chem_comp.name "~{N}-(2-methylpropyl)-2-[4-[[5-(7-oxa-2-azaspiro[3.5]nonan-2-yl)-1-oxidanylidene-2,7-naphthyridin-2-yl]methyl]phenyl]-~{N}-[[(2~{S})-piperidin-2-yl]methyl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H45 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-14 _chem_comp.pdbx_modified_date 2026-10-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 571.753 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JSD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SZF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JSD C10 C1 C 0 1 N N N N N N -42.575 24.400 23.969 -4.152 3.593 3.401 C10 A1JSD 1 A1JSD N12 N1 N 0 1 N N N N N N -42.652 26.824 23.394 -4.389 1.808 1.741 N12 A1JSD 2 A1JSD C13 C2 C 0 1 N N N N N N -43.407 29.894 22.490 -4.339 -0.067 -0.593 C13 A1JSD 3 A1JSD C15 C3 C 0 1 N N N N N N -42.562 31.178 22.448 -4.561 -1.550 -0.738 C15 A1JSD 4 A1JSD C17 C4 C 0 1 Y N N N N N -43.981 33.251 22.956 -2.465 -2.514 -1.709 C17 A1JSD 5 A1JSD C20 C5 C 0 1 N N N N N N -44.193 35.616 26.000 0.483 -4.314 -0.185 C20 A1JSD 6 A1JSD C22 C6 C 0 1 N N N N N N -43.601 37.516 24.265 2.209 -2.818 -1.034 C22 A1JSD 7 A1JSD C24 C7 C 0 1 Y N N N N N -41.700 39.167 24.762 3.604 -1.484 0.426 C24 A1JSD 8 A1JSD C28 C8 C 0 1 N N N N N N -41.925 42.742 21.889 6.692 1.516 -0.750 C28 A1JSD 9 A1JSD C01 C9 C 0 1 N N N N N N -41.937 30.270 18.083 -8.342 -0.463 -2.692 C01 A1JSD 10 A1JSD C02 C10 C 0 1 N N N N N N -43.018 30.008 19.149 -6.984 0.193 -2.435 C02 A1JSD 11 A1JSD C03 C11 C 0 1 N N N N N N -44.229 29.347 18.486 -6.981 1.606 -3.022 C03 A1JSD 12 A1JSD C04 C12 C 0 1 N N N N N N -42.429 29.152 20.321 -6.729 0.265 -0.929 C04 A1JSD 13 A1JSD C06 C13 C 0 1 N N N N N N -44.115 27.706 21.537 -5.164 2.225 -0.544 C06 A1JSD 14 A1JSD C07 C14 C 0 1 N N S N N N -43.183 26.534 22.032 -5.303 2.620 0.928 C07 A1JSD 15 A1JSD C08 C15 C 0 1 N N N N N N -43.937 25.196 22.004 -4.956 4.101 1.093 C08 A1JSD 16 A1JSD C09 C16 C 0 1 N N N N N N -43.076 24.076 22.572 -5.078 4.486 2.570 C09 A1JSD 17 A1JSD C11 C17 C 0 1 N N N N N N -41.801 25.720 23.937 -4.522 2.127 3.168 C11 A1JSD 18 A1JSD C16 C18 C 0 1 Y N N N N N -42.994 32.347 23.394 -3.247 -2.272 -0.594 C16 A1JSD 19 A1JSD C18 C19 C 0 1 Y N N N N N -44.383 34.299 23.799 -1.259 -3.176 -1.576 C18 A1JSD 20 A1JSD C19 C20 C 0 1 Y N N N N N -43.799 34.446 25.070 -0.831 -3.592 -0.329 C19 A1JSD 21 A1JSD C23 C21 C 0 1 N N N N N N -42.843 38.601 23.893 3.202 -1.919 -0.907 C23 A1JSD 22 A1JSD C25 C22 C 0 1 Y N N N N N -40.818 40.366 24.394 4.637 -0.559 0.648 C25 A1JSD 23 A1JSD C27 C23 C 0 1 N N N N N N -40.664 42.505 22.758 6.777 0.124 -0.110 C27 A1JSD 24 A1JSD C29 C24 C 0 1 N N N N N N -42.826 43.799 22.458 7.458 2.592 0.016 C29 A1JSD 25 A1JSD C30 C25 C 0 1 N N N N N N -44.095 43.901 21.642 7.210 3.949 -0.653 C30 A1JSD 26 A1JSD C32 C26 C 0 1 N N N N N N -42.907 43.215 19.644 6.775 2.941 -2.790 C32 A1JSD 27 A1JSD C33 C27 C 0 1 N N N N N N -41.626 43.070 20.448 6.997 1.525 -2.246 C33 A1JSD 28 A1JSD C34 C28 C 0 1 N N N N N N -42.365 41.332 22.342 5.192 1.480 -0.427 C34 A1JSD 29 A1JSD C35 C29 C 0 1 Y N N N N N -39.829 40.730 25.321 4.946 -0.223 1.955 C35 A1JSD 30 A1JSD C37 C30 C 0 1 Y N N N N N -40.367 38.997 26.862 3.316 -1.624 2.825 C37 A1JSD 31 A1JSD C38 C31 C 0 1 Y N N N N N -41.438 38.528 25.974 2.932 -2.026 1.548 C38 A1JSD 32 A1JSD C39 C32 C 0 1 N N N N N N -42.302 37.314 26.368 1.855 -2.991 1.311 C39 A1JSD 33 A1JSD C41 C33 C 0 1 Y N N N N N -42.810 33.565 25.514 -1.610 -3.345 0.786 C41 A1JSD 34 A1JSD C42 C34 C 0 1 Y N N N N N -42.411 32.502 24.675 -2.822 -2.693 0.652 C42 A1JSD 35 A1JSD N05 N2 N 0 1 N N N N N N -43.348 28.946 21.495 -5.380 0.783 -0.686 N05 A1JSD 36 A1JSD N21 N3 N 0 1 N N N N N N -43.356 36.846 25.536 1.553 -3.340 0.043 N21 A1JSD 37 A1JSD N26 N4 N 0 1 N N N N N N -41.083 41.096 23.140 5.334 0.006 -0.421 N26 A1JSD 38 A1JSD N36 N5 N 0 1 Y N N N N N -39.626 40.028 26.533 4.293 -0.753 2.977 N36 A1JSD 39 A1JSD O14 O1 O 0 1 N N N N N N -44.144 29.731 23.480 -3.222 0.362 -0.392 O14 A1JSD 40 A1JSD O31 O2 O 0 1 N N N N N N -43.811 44.113 20.271 7.562 3.865 -2.036 O31 A1JSD 41 A1JSD O40 O3 O 0 1 N N N N N N -42.097 36.731 27.451 1.249 -3.482 2.247 O40 A1JSD 42 A1JSD H101 H1 H 0 0 N N N N N N -43.431 24.493 24.654 -3.118 3.760 3.098 H101 A1JSD 43 A1JSD H102 H2 H 0 0 N N N N N N -41.912 23.594 24.317 -4.265 3.834 4.458 H102 A1JSD 44 A1JSD H1 H3 H 0 1 N N N N N N -42.102 27.658 23.351 -4.536 0.823 1.575 H1 A1JSD 45 A1JSD H151 H5 H 0 0 N N N N N N -41.529 30.904 22.710 -5.250 -1.892 0.034 H151 A1JSD 46 A1JSD H152 H6 H 0 0 N N N N N N -42.589 31.559 21.416 -4.985 -1.759 -1.721 H152 A1JSD 47 A1JSD H171 H7 H 0 0 N N N N N N -44.426 33.139 21.978 -2.799 -2.189 -2.683 H171 A1JSD 48 A1JSD H201 H8 H 0 0 N N N N N N -45.268 35.830 25.908 0.430 -5.000 0.660 H201 A1JSD 49 A1JSD H202 H9 H 0 0 N N N N N N -43.957 35.367 27.045 0.691 -4.875 -1.096 H202 A1JSD 50 A1JSD H221 H10 H 0 0 N N N N N N -44.383 37.158 23.611 1.917 -3.135 -2.024 H221 A1JSD 51 A1JSD H011 H11 H 0 0 N N N N N N -41.064 30.745 18.554 -8.523 -0.515 -3.766 H011 A1JSD 52 A1JSD H012 H12 H 0 0 N N N N N N -41.633 29.316 17.627 -8.344 -1.470 -2.274 H012 A1JSD 53 A1JSD H013 H13 H 0 0 N N N N N N -42.342 30.936 17.306 -9.126 0.128 -2.219 H013 A1JSD 54 A1JSD H021 H14 H 0 0 N N N N N N -43.335 30.976 19.563 -6.200 -0.399 -2.908 H021 A1JSD 55 A1JSD H031 H15 H 0 0 N N N N N N -45.004 29.158 19.243 -7.765 2.197 -2.549 H031 A1JSD 56 A1JSD H032 H16 H 0 0 N N N N N N -44.631 30.014 17.709 -6.013 2.073 -2.839 H032 A1JSD 57 A1JSD H033 H17 H 0 0 N N N N N N -43.922 28.394 18.029 -7.162 1.554 -4.096 H033 A1JSD 58 A1JSD H041 H18 H 0 0 N N N N N N -42.165 28.163 19.919 -7.461 0.929 -0.468 H041 A1JSD 59 A1JSD H042 H19 H 0 0 N N N N N N -41.521 29.654 20.685 -6.819 -0.731 -0.496 H042 A1JSD 60 A1JSD H061 H20 H 0 0 N N N N N N -44.961 27.821 22.230 -5.904 2.764 -1.136 H061 A1JSD 61 A1JSD H062 H21 H 0 0 N N N N N N -44.494 27.474 20.531 -4.163 2.479 -0.895 H062 A1JSD 62 A1JSD H071 H22 H 0 0 N N N N N N -42.337 26.464 21.332 -6.329 2.448 1.254 H071 A1JSD 63 A1JSD H081 H23 H 0 0 N N N N N N -44.854 25.286 22.606 -3.935 4.276 0.754 H081 A1JSD 64 A1JSD H082 H24 H 0 0 N N N N N N -44.203 24.954 20.964 -5.645 4.705 0.502 H082 A1JSD 65 A1JSD H091 H25 H 0 0 N N N N N N -43.674 23.154 22.614 -6.108 4.348 2.899 H091 A1JSD 66 A1JSD H092 H26 H 0 0 N N N N N N -42.211 23.922 21.911 -4.790 5.530 2.699 H092 A1JSD 67 A1JSD H111 H27 H 0 0 N N N N N N -41.486 25.978 24.959 -3.855 1.488 3.746 H111 A1JSD 68 A1JSD H112 H28 H 0 0 N N N N N N -40.913 25.602 23.298 -5.551 1.957 3.484 H112 A1JSD 69 A1JSD H181 H29 H 0 0 N N N N N N -45.142 34.994 23.471 -0.650 -3.369 -2.448 H181 A1JSD 70 A1JSD H231 H30 H 0 0 N N N N N N -43.057 39.079 22.949 3.696 -1.524 -1.783 H231 A1JSD 71 A1JSD H271 H31 H 0 0 N N N N N N -40.593 43.187 23.618 7.404 -0.575 -0.663 H271 A1JSD 72 A1JSD H272 H32 H 0 0 N N N N N N -39.726 42.540 22.184 6.999 0.144 0.957 H272 A1JSD 73 A1JSD H291 H33 H 0 0 N N N N N N -43.082 43.538 23.496 7.109 2.625 1.048 H291 A1JSD 74 A1JSD H292 H34 H 0 0 N N N N N N -42.305 44.768 22.441 8.524 2.365 -0.004 H292 A1JSD 75 A1JSD H301 H35 H 0 0 N N N N N N -44.666 42.967 21.749 6.157 4.213 -0.561 H301 A1JSD 76 A1JSD H302 H36 H 0 0 N N N N N N -44.696 44.743 22.018 7.820 4.711 -0.168 H302 A1JSD 77 A1JSD H321 H37 H 0 0 N N N N N N -43.386 42.229 19.553 7.073 2.979 -3.838 H321 A1JSD 78 A1JSD H322 H38 H 0 0 N N N N N N -42.660 43.596 18.642 5.720 3.203 -2.701 H322 A1JSD 79 A1JSD H331 H39 H 0 0 N N N N N N -41.065 44.015 20.403 8.034 1.230 -2.409 H331 A1JSD 80 A1JSD H332 H40 H 0 0 N N N N N N -41.019 42.262 20.014 6.333 0.829 -2.759 H332 A1JSD 81 A1JSD H341 H41 H 0 0 N N N N N N -42.496 40.627 21.508 4.942 1.901 0.547 H341 A1JSD 82 A1JSD H342 H42 H 0 0 N N N N N N -43.272 41.337 22.964 4.560 1.859 -1.230 H342 A1JSD 83 A1JSD H351 H43 H 0 0 N N N N N N -39.198 41.579 25.101 5.737 0.486 2.145 H351 A1JSD 84 A1JSD H371 H44 H 0 0 N N N N N N -40.187 38.487 27.797 2.814 -2.027 3.691 H371 A1JSD 85 A1JSD H411 H45 H 0 0 N N N N N N -42.357 33.695 26.486 -1.276 -3.670 1.760 H411 A1JSD 86 A1JSD H421 H46 H 0 0 N N N N N N -41.658 31.804 25.011 -3.432 -2.503 1.523 H421 A1JSD 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JSD C01 C02 SING N N 1 A1JSD C02 C03 SING N N 2 A1JSD C02 C04 SING N N 3 A1JSD C04 N05 SING N N 4 A1JSD N05 C06 SING N N 5 A1JSD N05 C13 SING N N 6 A1JSD C06 C07 SING N N 7 A1JSD C07 N12 SING N N 8 A1JSD C07 C08 SING N N 9 A1JSD C08 C09 SING N N 10 A1JSD C09 C10 SING N N 11 A1JSD C10 C11 SING N N 12 A1JSD C11 N12 SING N N 13 A1JSD C13 O14 DOUB N N 14 A1JSD C13 C15 SING N N 15 A1JSD C15 C16 SING N N 16 A1JSD C16 C42 DOUB Y N 17 A1JSD C16 C17 SING Y N 18 A1JSD C17 C18 DOUB Y N 19 A1JSD C18 C19 SING Y N 20 A1JSD C19 C20 SING N N 21 A1JSD C19 C41 DOUB Y N 22 A1JSD C20 N21 SING N N 23 A1JSD N21 C39 SING N N 24 A1JSD N21 C22 SING N N 25 A1JSD C22 C23 DOUB N N 26 A1JSD C23 C24 SING N N 27 A1JSD C24 C38 DOUB Y N 28 A1JSD C24 C25 SING Y N 29 A1JSD C25 N26 SING N N 30 A1JSD C25 C35 DOUB Y N 31 A1JSD N26 C34 SING N N 32 A1JSD N26 C27 SING N N 33 A1JSD C27 C28 SING N N 34 A1JSD C28 C33 SING N N 35 A1JSD C28 C29 SING N N 36 A1JSD C28 C34 SING N N 37 A1JSD C29 C30 SING N N 38 A1JSD C30 O31 SING N N 39 A1JSD O31 C32 SING N N 40 A1JSD C32 C33 SING N N 41 A1JSD C35 N36 SING Y N 42 A1JSD N36 C37 DOUB Y N 43 A1JSD C37 C38 SING Y N 44 A1JSD C38 C39 SING N N 45 A1JSD C39 O40 DOUB N N 46 A1JSD C41 C42 SING Y N 47 A1JSD C10 H101 SING N N 48 A1JSD C10 H102 SING N N 49 A1JSD N12 H1 SING N N 50 A1JSD C15 H151 SING N N 51 A1JSD C15 H152 SING N N 52 A1JSD C17 H171 SING N N 53 A1JSD C20 H201 SING N N 54 A1JSD C20 H202 SING N N 55 A1JSD C22 H221 SING N N 56 A1JSD C01 H011 SING N N 57 A1JSD C01 H012 SING N N 58 A1JSD C01 H013 SING N N 59 A1JSD C02 H021 SING N N 60 A1JSD C03 H031 SING N N 61 A1JSD C03 H032 SING N N 62 A1JSD C03 H033 SING N N 63 A1JSD C04 H041 SING N N 64 A1JSD C04 H042 SING N N 65 A1JSD C06 H061 SING N N 66 A1JSD C06 H062 SING N N 67 A1JSD C07 H071 SING N N 68 A1JSD C08 H081 SING N N 69 A1JSD C08 H082 SING N N 70 A1JSD C09 H091 SING N N 71 A1JSD C09 H092 SING N N 72 A1JSD C11 H111 SING N N 73 A1JSD C11 H112 SING N N 74 A1JSD C18 H181 SING N N 75 A1JSD C23 H231 SING N N 76 A1JSD C27 H271 SING N N 77 A1JSD C27 H272 SING N N 78 A1JSD C29 H291 SING N N 79 A1JSD C29 H292 SING N N 80 A1JSD C30 H301 SING N N 81 A1JSD C30 H302 SING N N 82 A1JSD C32 H321 SING N N 83 A1JSD C32 H322 SING N N 84 A1JSD C33 H331 SING N N 85 A1JSD C33 H332 SING N N 86 A1JSD C34 H341 SING N N 87 A1JSD C34 H342 SING N N 88 A1JSD C35 H351 SING N N 89 A1JSD C37 H371 SING N N 90 A1JSD C41 H411 SING N N 91 A1JSD C42 H421 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JSD InChI InChI 1.06 "InChI=1S/C34H45N5O3/c1-25(2)20-38(22-28-5-3-4-13-36-28)32(40)17-26-6-8-27(9-7-26)21-37-14-10-29-30(33(37)41)18-35-19-31(29)39-23-34(24-39)11-15-42-16-12-34/h6-10,14,18-19,25,28,36H,3-5,11-13,15-17,20-24H2,1-2H3/t28-/m0/s1" A1JSD InChIKey InChI 1.06 OIOFDKAWXZLLCU-NDEPHWFRSA-N A1JSD SMILES_CANONICAL CACTVS 3.385 "CC(C)CN(C[C@@H]1CCCCN1)C(=O)Cc2ccc(CN3C=Cc4c(cncc4C3=O)N5CC6(CCOCC6)C5)cc2" A1JSD SMILES CACTVS 3.385 "CC(C)CN(C[CH]1CCCCN1)C(=O)Cc2ccc(CN3C=Cc4c(cncc4C3=O)N5CC6(CCOCC6)C5)cc2" A1JSD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)CN(C[C@@H]1CCCCN1)C(=O)Cc2ccc(cc2)CN3C=Cc4c(cncc4N5CC6(C5)CCOCC6)C3=O" A1JSD SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CN(CC1CCCCN1)C(=O)Cc2ccc(cc2)CN3C=Cc4c(cncc4N5CC6(C5)CCOCC6)C3=O" # _pdbx_chem_comp_identifier.comp_id A1JSD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(2-methylpropyl)-2-[4-[[5-(7-oxa-2-azaspiro[3.5]nonan-2-yl)-1-oxidanylidene-2,7-naphthyridin-2-yl]methyl]phenyl]-~{N}-[[(2~{S})-piperidin-2-yl]methyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JSD "Create component" 2025-10-14 PDBE A1JSD "Initial release" 2026-10-28 RCSB #