data_A1JSO # _chem_comp.id A1JSO _chem_comp.name Sitravatinib _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H29 F2 N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N1'-[3-fluoranyl-4-[2-[5-[(2-methoxyethylamino)methyl]pyridin-2-yl]thieno[3,2-b]pyridin-7-yl]oxy-phenyl]-N1-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-16 _chem_comp.pdbx_modified_date 2026-02-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 629.676 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JSO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9T0B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JSO C1 C1 C 0 1 N N N N N N 7.650 3.466 -15.005 12.739 2.534 0.532 C1 A1JSO 1 A1JSO C2 C2 C 0 1 N N N N N N 6.263 4.052 -15.138 12.127 1.942 -0.739 C2 A1JSO 2 A1JSO C3 C3 C 0 1 N N N N N N 4.475 3.583 -16.745 10.130 0.934 -1.666 C3 A1JSO 3 A1JSO C7 C4 C 0 1 Y N N N N N 0.679 4.781 -15.252 6.207 -0.356 -0.747 C7 A1JSO 4 A1JSO C8 C5 C 0 1 Y N N N N N 2.587 5.223 -16.449 8.473 -0.778 -0.883 C8 A1JSO 5 A1JSO C9 C6 C 0 1 Y N N N N N -0.647 5.245 -14.843 4.849 -0.836 -0.417 C9 A1JSO 6 A1JSO C10 C7 C 0 1 Y N N N N N -1.595 4.582 -14.160 4.564 -2.063 0.027 C10 A1JSO 7 A1JSO C11 C8 C 0 1 Y N N N N N -2.810 5.314 -13.999 3.206 -2.317 0.281 C11 A1JSO 8 A1JSO C12 C9 C 0 1 Y N N N N N -5.016 5.664 -13.437 1.343 -3.559 0.928 C12 A1JSO 9 A1JSO C13 C10 C 0 1 Y N N N N N -5.030 6.923 -14.006 0.486 -2.499 0.683 C13 A1JSO 10 A1JSO C14 C11 C 0 1 Y N N N N N -3.879 7.356 -14.653 1.009 -1.302 0.218 C14 A1JSO 11 A1JSO C15 C12 C 0 1 Y N N N N N -4.939 9.247 -15.654 -1.142 -0.418 0.099 C15 A1JSO 12 A1JSO C16 C13 C 0 1 Y N N N N N -5.708 8.790 -16.713 -1.916 -0.711 -1.013 C16 A1JSO 13 A1JSO C19 C14 C 0 1 N N N N N N -9.118 12.229 -16.220 -5.896 -1.863 -0.277 C19 A1JSO 14 A1JSO C20 C15 C 0 1 N N N N N N -10.503 12.500 -16.786 -7.397 -1.984 -0.210 C20 A1JSO 15 A1JSO C21 C16 C 0 1 N N N N N N -11.422 13.348 -15.906 -8.032 -3.238 -0.814 C21 A1JSO 16 A1JSO C22 C17 C 0 1 N N N N N N -10.781 13.971 -17.088 -7.978 -3.064 0.705 C22 A1JSO 17 A1JSO C24 C18 C 0 1 Y N N N N N -13.112 10.927 -19.098 -8.316 1.659 0.016 C24 A1JSO 18 A1JSO C27 C19 C 0 1 Y N N N N N -14.411 9.270 -20.857 -9.787 4.004 0.022 C27 A1JSO 19 A1JSO C30 C20 C 0 1 Y N N N N N -6.504 11.049 -15.297 -3.100 -0.494 1.486 C30 A1JSO 20 A1JSO C31 C21 C 0 1 Y N N N N N -5.389 10.339 -14.937 -1.737 -0.310 1.351 C31 A1JSO 21 A1JSO C32 C22 C 0 1 Y N N N N N -2.730 6.572 -14.579 2.396 -1.211 0.014 C32 A1JSO 22 A1JSO F1 F1 F 0 1 N N N N N N -4.633 10.775 -13.902 -0.982 -0.025 2.435 F1 A1JSO 23 A1JSO C18 C23 C 0 1 Y N N N N N -7.308 10.545 -16.313 -3.874 -0.786 0.371 C18 A1JSO 24 A1JSO N3 N1 N 0 1 N N N N N N -8.554 11.090 -16.655 -5.256 -0.973 0.507 N3 A1JSO 25 A1JSO C23 C24 C 0 1 N N N N N N -11.187 11.457 -17.682 -8.159 -0.690 -0.331 C23 A1JSO 26 A1JSO N4 N2 N 0 1 N N N N N N -12.373 11.787 -18.244 -7.572 0.473 0.014 N4 A1JSO 27 A1JSO C29 C25 C 0 1 Y N N N N N -13.646 11.435 -20.278 -9.660 1.637 0.365 C29 A1JSO 28 A1JSO C28 C26 C 0 1 Y N N N N N -14.339 10.610 -21.146 -10.392 2.808 0.367 C28 A1JSO 29 A1JSO F F2 F 0 1 N N N N N N -15.080 8.456 -21.722 -10.504 5.149 0.025 F A1JSO 30 A1JSO C26 C27 C 0 1 Y N N N N N -13.909 8.729 -19.701 -8.445 4.030 -0.322 C26 A1JSO 31 A1JSO C25 C28 C 0 1 Y N N N N N -13.227 9.564 -18.828 -7.710 2.861 -0.325 C25 A1JSO 32 A1JSO O3 O1 O 0 1 N N N N N N -10.645 10.394 -17.914 -9.301 -0.695 -0.740 O3 A1JSO 33 A1JSO O2 O2 O 0 1 N N N N N N -8.611 12.990 -15.408 -5.265 -2.567 -1.037 O2 A1JSO 34 A1JSO C17 C29 C 0 1 Y N N N N N -6.889 9.434 -17.040 -3.279 -0.895 -0.878 C17 A1JSO 35 A1JSO O1 O3 O 0 1 N N N N N N -3.775 8.603 -15.268 0.200 -0.242 -0.034 O1 A1JSO 36 A1JSO N2 N3 N 0 1 Y N N N N N -3.929 4.868 -13.380 2.634 -3.454 0.731 N2 A1JSO 37 A1JSO S S1 S 0 1 Y N N N N N -1.215 6.830 -15.368 3.388 0.128 -0.548 S A1JSO 38 A1JSO C6 C30 C 0 1 Y N N N N N 1.101 3.481 -15.001 6.387 0.950 -1.204 C6 A1JSO 39 A1JSO C5 C31 C 0 1 Y N N N N N 2.341 3.089 -15.475 7.665 1.385 -1.508 C5 A1JSO 40 A1JSO N1 N4 N 0 1 Y N N N N N 1.392 5.633 -16.006 7.248 -1.168 -0.600 N1 A1JSO 41 A1JSO C4 C32 C 0 1 Y N N N N N 3.114 3.966 -16.216 8.722 0.502 -1.346 C4 A1JSO 42 A1JSO N N5 N 0 1 N N N N N N 5.337 3.056 -15.687 10.751 1.509 -0.465 N A1JSO 43 A1JSO O O4 O 0 1 N N N N N N 8.433 4.217 -14.077 12.855 1.513 1.525 O A1JSO 44 A1JSO C C33 C 0 1 N N N N N N 8.538 3.576 -12.801 13.418 1.963 2.759 C A1JSO 45 A1JSO H3 H1 H 0 1 N N N N N N 8.143 3.481 -15.988 13.727 2.936 0.307 H3 A1JSO 46 A1JSO H4 H2 H 0 1 N N N N N N 7.570 2.428 -14.651 12.098 3.333 0.906 H4 A1JSO 47 A1JSO H5 H3 H 0 1 N N N N N N 5.907 4.370 -14.147 12.120 2.698 -1.525 H5 A1JSO 48 A1JSO H6 H4 H 0 1 N N N N N N 6.300 4.922 -15.810 12.720 1.087 -1.063 H6 A1JSO 49 A1JSO H8 H5 H 0 1 N N N N N N 4.951 4.473 -17.183 10.709 0.071 -1.996 H8 A1JSO 50 A1JSO H9 H6 H 0 1 N N N N N N 4.352 2.814 -17.521 10.110 1.682 -2.458 H9 A1JSO 51 A1JSO H12 H7 H 0 1 N N N N N N 3.178 5.919 -17.026 9.295 -1.466 -0.751 H12 A1JSO 52 A1JSO H13 H8 H 0 1 N N N N N N -1.451 3.586 -13.768 5.328 -2.811 0.180 H13 A1JSO 53 A1JSO H14 H9 H 0 1 N N N N N N -5.936 5.293 -13.010 0.938 -4.493 1.290 H14 A1JSO 54 A1JSO H15 H10 H 0 1 N N N N N N -5.907 7.550 -13.950 -0.576 -2.604 0.850 H15 A1JSO 55 A1JSO H16 H11 H 0 1 N N N N N N -5.386 7.931 -17.283 -1.454 -0.794 -1.986 H16 A1JSO 56 A1JSO H19 H12 H 0 1 N N N N N N -12.506 13.161 -15.906 -9.002 -3.127 -1.299 H19 A1JSO 57 A1JSO H20 H13 H 0 1 N N N N N N -11.100 13.634 -14.894 -7.365 -3.975 -1.260 H20 A1JSO 58 A1JSO H21 H14 H 0 1 N N N N N N -11.392 14.244 -17.961 -7.275 -3.687 1.258 H21 A1JSO 59 A1JSO H22 H15 H 0 1 N N N N N N -9.985 14.718 -16.949 -8.912 -2.838 1.220 H22 A1JSO 60 A1JSO H28 H16 H 0 1 N N N N N N -6.752 11.977 -14.804 -3.562 -0.411 2.458 H28 A1JSO 61 A1JSO H18 H17 H 0 1 N N N N N N -9.094 10.561 -17.309 -5.752 -0.462 1.165 H18 A1JSO 62 A1JSO H23 H18 H 0 1 N N N N N N -12.752 12.691 -18.046 -6.635 0.488 0.262 H23 A1JSO 63 A1JSO H27 H19 H 0 1 N N N N N N -13.519 12.480 -20.518 -10.133 0.704 0.634 H27 A1JSO 64 A1JSO H26 H20 H 0 1 N N N N N N -14.812 11.011 -22.030 -11.438 2.790 0.638 H26 A1JSO 65 A1JSO H25 H21 H 0 1 N N N N N N -14.041 7.681 -19.476 -7.975 4.964 -0.591 H25 A1JSO 66 A1JSO H24 H22 H 0 1 N N N N N N -12.782 9.155 -17.933 -6.664 2.881 -0.592 H24 A1JSO 67 A1JSO H17 H23 H 0 1 N N N N N N -7.488 9.073 -17.863 -3.881 -1.122 -1.746 H17 A1JSO 68 A1JSO H11 H24 H 0 1 N N N N N N 0.477 2.793 -14.450 5.541 1.612 -1.319 H11 A1JSO 69 A1JSO H10 H25 H 0 1 N N N N N N 2.707 2.095 -15.266 7.835 2.391 -1.865 H10 A1JSO 70 A1JSO H29 H26 H 0 1 N N N N N N 5.872 2.299 -16.062 10.724 0.856 0.304 H29 A1JSO 71 A1JSO H H28 H 0 1 N N N N N N 9.149 4.195 -12.128 14.420 2.353 2.580 H A1JSO 72 A1JSO H1 H29 H 0 1 N N N N N N 7.534 3.449 -12.371 12.792 2.750 3.178 H1 A1JSO 73 A1JSO H2 H30 H 0 1 N N N N N N 9.012 2.591 -12.924 13.472 1.129 3.459 H2 A1JSO 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JSO C O SING N N 1 A1JSO O C1 SING N N 2 A1JSO C1 C2 SING N N 3 A1JSO C2 N SING N N 4 A1JSO N C3 SING N N 5 A1JSO C3 C4 SING N N 6 A1JSO C4 C5 DOUB Y N 7 A1JSO C5 C6 SING Y N 8 A1JSO C6 C7 DOUB Y N 9 A1JSO N1 C7 SING Y N 10 A1JSO C8 N1 DOUB Y N 11 A1JSO C4 C8 SING Y N 12 A1JSO C7 C9 SING N N 13 A1JSO C9 C10 DOUB Y N 14 A1JSO C10 C11 SING Y N 15 A1JSO C11 N2 SING Y N 16 A1JSO N2 C12 DOUB Y N 17 A1JSO C12 C13 SING Y N 18 A1JSO C13 C14 DOUB Y N 19 A1JSO C14 O1 SING N N 20 A1JSO O1 C15 SING N N 21 A1JSO C15 C16 DOUB Y N 22 A1JSO C16 C17 SING Y N 23 A1JSO C17 C18 DOUB Y N 24 A1JSO N3 C18 SING N N 25 A1JSO C19 N3 SING N N 26 A1JSO O2 C19 DOUB N N 27 A1JSO C20 C19 SING N N 28 A1JSO C20 C21 SING N N 29 A1JSO C21 C22 SING N N 30 A1JSO C22 C20 SING N N 31 A1JSO C23 C20 SING N N 32 A1JSO O3 C23 DOUB N N 33 A1JSO N4 C23 SING N N 34 A1JSO C24 N4 SING N N 35 A1JSO C24 C25 DOUB Y N 36 A1JSO C25 C26 SING Y N 37 A1JSO C26 C27 DOUB Y N 38 A1JSO F C27 SING N N 39 A1JSO C27 C28 SING Y N 40 A1JSO C28 C29 DOUB Y N 41 A1JSO C29 C24 SING Y N 42 A1JSO C18 C30 SING Y N 43 A1JSO C30 C31 DOUB Y N 44 A1JSO C15 C31 SING Y N 45 A1JSO C31 F1 SING N N 46 A1JSO C32 C14 SING Y N 47 A1JSO C11 C32 DOUB Y N 48 A1JSO S C32 SING Y N 49 A1JSO C9 S SING Y N 50 A1JSO C1 H3 SING N N 51 A1JSO C1 H4 SING N N 52 A1JSO C2 H5 SING N N 53 A1JSO C2 H6 SING N N 54 A1JSO C3 H8 SING N N 55 A1JSO C3 H9 SING N N 56 A1JSO C8 H12 SING N N 57 A1JSO C10 H13 SING N N 58 A1JSO C12 H14 SING N N 59 A1JSO C13 H15 SING N N 60 A1JSO C16 H16 SING N N 61 A1JSO C21 H19 SING N N 62 A1JSO C21 H20 SING N N 63 A1JSO C22 H21 SING N N 64 A1JSO C22 H22 SING N N 65 A1JSO C30 H28 SING N N 66 A1JSO N3 H18 SING N N 67 A1JSO N4 H23 SING N N 68 A1JSO C29 H27 SING N N 69 A1JSO C28 H26 SING N N 70 A1JSO C26 H25 SING N N 71 A1JSO C25 H24 SING N N 72 A1JSO C17 H17 SING N N 73 A1JSO C6 H11 SING N N 74 A1JSO C5 H10 SING N N 75 A1JSO N H29 SING N N 76 A1JSO C H SING N N 77 A1JSO C H1 SING N N 78 A1JSO C H2 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JSO InChI InChI 1.06 "InChI=1S/C33H29F2N5O4S/c1-43-15-14-36-18-20-2-8-25(38-19-20)29-17-26-30(45-29)28(10-13-37-26)44-27-9-7-23(16-24(27)35)40-32(42)33(11-12-33)31(41)39-22-5-3-21(34)4-6-22/h2-10,13,16-17,19,36H,11-12,14-15,18H2,1H3,(H,39,41)(H,40,42)" A1JSO InChIKey InChI 1.06 WLAVZAAODLTUSW-UHFFFAOYSA-N A1JSO SMILES_CANONICAL CACTVS 3.385 "COCCNCc1ccc(nc1)c2sc3c(Oc4ccc(NC(=O)C5(CC5)C(=O)Nc6ccc(F)cc6)cc4F)ccnc3c2" A1JSO SMILES CACTVS 3.385 "COCCNCc1ccc(nc1)c2sc3c(Oc4ccc(NC(=O)C5(CC5)C(=O)Nc6ccc(F)cc6)cc4F)ccnc3c2" A1JSO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COCCNCc1ccc(nc1)c2cc3c(s2)c(ccn3)Oc4ccc(cc4F)NC(=O)C5(CC5)C(=O)Nc6ccc(cc6)F" A1JSO SMILES "OpenEye OEToolkits" 2.0.7 "COCCNCc1ccc(nc1)c2cc3c(s2)c(ccn3)Oc4ccc(cc4F)NC(=O)C5(CC5)C(=O)Nc6ccc(cc6)F" # _pdbx_chem_comp_identifier.comp_id A1JSO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}1'-[3-fluoranyl-4-[2-[5-[(2-methoxyethylamino)methyl]pyridin-2-yl]thieno[3,2-b]pyridin-7-yl]oxy-phenyl]-~{N}1-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JSO "Create component" 2025-10-16 PDBE A1JSO "Modify name" 2026-02-08 PDBE A1JSO "Initial release" 2026-02-18 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JSO _pdbx_chem_comp_synonyms.name "N1'-[3-fluoranyl-4-[2-[5-[(2-methoxyethylamino)methyl]pyridin-2-yl]thieno[3,2-b]pyridin-7-yl]oxy-phenyl]-N1-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #