data_A1JT7 # _chem_comp.id A1JT7 _chem_comp.name "~{N}-[(3~{R},6~{R},7~{R},13~{Z})-7-oxidanyl-4,8-bis(oxidanylidene)-6-[[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]methyl]-5,9-diazabicyclo[14.3.1]icosa-1(19),13,16(20),17-tetraen-3-yl]-3-phenyl-propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H40 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-10 _chem_comp.pdbx_modified_date 2026-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 560.684 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JT7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9T72 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JT7 N1 N1 N 0 1 N N N N N N -12.160 -28.607 0.292 0.186 -0.726 -0.190 N1 A1JT7 1 A1JT7 N3 N2 N 0 1 N N N N N N -9.980 -25.097 3.408 0.478 -4.388 3.209 N3 A1JT7 2 A1JT7 C4 C1 C 0 1 Y N N N N N -15.747 -31.111 -2.500 -2.871 5.055 1.558 C4 A1JT7 3 A1JT7 C5 C2 C 0 1 Y N N N N N -15.226 -29.831 -2.445 -1.769 4.278 1.932 C5 A1JT7 4 A1JT7 C6 C3 C 0 1 Y N N N N N -14.077 -29.517 -3.156 -1.817 2.904 1.791 C6 A1JT7 5 A1JT7 C7 C4 C 0 1 N N N N N N -13.477 -28.142 -3.082 -0.617 2.067 2.151 C7 A1JT7 6 A1JT7 C8 C5 C 0 1 N N R N N N -12.272 -28.030 -2.123 0.008 1.499 0.875 C8 A1JT7 7 A1JT7 C10 C6 C 0 1 N N R N N N -12.740 -28.677 1.645 -0.372 -2.082 -0.374 C10 A1JT7 8 A1JT7 C13 C7 C 0 1 N N N N N N -13.285 -32.867 -4.814 -5.322 2.408 0.448 C13 A1JT7 9 A1JT7 C15 C8 C 0 1 N N N N N N -11.094 -32.827 -3.566 -5.417 1.643 -1.869 C15 A1JT7 10 A1JT7 C17 C9 C 0 1 N N N N N N -11.059 -33.451 -1.081 -5.483 -0.755 -2.494 C17 A1JT7 11 A1JT7 C20 C10 C 0 1 N N S N N N -11.523 -26.524 2.435 1.108 -3.050 1.391 C20 A1JT7 12 A1JT7 C21 C11 C 0 1 N N N N N N -10.481 -26.145 1.372 2.288 -4.008 1.683 C21 A1JT7 13 A1JT7 C22 C12 C 0 1 N N N N N N -9.666 -25.012 1.991 1.936 -4.516 3.099 C22 A1JT7 14 A1JT7 C24 C13 C 0 1 N N N N N N -10.517 -27.098 -3.503 2.251 1.499 -0.076 C24 A1JT7 15 A1JT7 C26 C14 C 0 1 N N N N N N -11.040 -26.575 -5.896 4.400 1.513 -1.314 C26 A1JT7 16 A1JT7 C28 C15 C 0 1 Y N N N N N -10.818 -24.420 -7.191 6.566 0.268 -1.149 C28 A1JT7 17 A1JT7 C1 C16 C 0 1 Y N N N N N -13.468 -30.511 -3.911 -2.967 2.297 1.319 C1 A1JT7 18 A1JT7 C2 C17 C 0 1 Y N N N N N -13.976 -31.805 -3.978 -4.070 3.069 0.965 C2 A1JT7 19 A1JT7 C3 C18 C 0 1 Y N N N N N -15.132 -32.089 -3.263 -4.018 4.445 1.086 C3 A1JT7 20 A1JT7 C9 C19 C 0 1 N N N N N N -12.770 -27.911 -0.679 -0.505 0.101 0.643 C9 A1JT7 21 A1JT7 O1 O1 O 0 1 N N N N N N -13.714 -27.155 -0.442 -1.518 -0.282 1.190 O1 A1JT7 22 A1JT7 C11 C20 C 0 1 N N R N N N -13.057 -30.157 1.946 -0.850 -2.228 -1.820 C11 A1JT7 23 A1JT7 C12 C21 C 0 1 N N N N N N -11.866 -31.066 1.725 -2.321 -2.557 -1.834 C12 A1JT7 24 A1JT7 N2 N3 N 0 1 N N N N N N -11.918 -31.831 0.633 -3.204 -1.613 -2.266 N2 A1JT7 25 A1JT7 C14 C22 C 0 1 N N N N N N -11.785 -32.918 -4.698 -5.444 2.652 -1.034 C14 A1JT7 26 A1JT7 C16 C23 C 0 1 N N N N N N -11.643 -32.554 -2.186 -5.263 0.237 -1.350 C16 A1JT7 27 A1JT7 C18 C24 C 0 1 N N N N N N -10.824 -32.722 0.238 -4.630 -2.003 -2.260 C18 A1JT7 28 A1JT7 O2 O2 O 0 1 N N N N N N -14.064 -30.624 1.061 -0.121 -3.277 -2.459 O2 A1JT7 29 A1JT7 O3 O3 O 0 1 N N N N N N -10.938 -31.071 2.504 -2.712 -3.645 -1.467 O3 A1JT7 30 A1JT7 C19 C25 C 0 1 N N N N N N -11.812 -28.012 2.672 0.709 -3.125 -0.084 C19 A1JT7 31 A1JT7 C23 C26 C 0 1 N N N N N N -11.034 -25.852 3.702 -0.014 -3.569 2.264 C23 A1JT7 32 A1JT7 O4 O4 O 0 1 N N N N N N -11.554 -25.978 4.826 -1.186 -3.288 2.129 O4 A1JT7 33 A1JT7 N4 N4 N 0 1 N N N N N N -11.505 -26.901 -2.620 1.466 1.467 1.018 N4 A1JT7 34 A1JT7 C25 C27 C 0 1 N N N N N N -10.382 -26.065 -4.601 3.750 1.466 0.071 C25 A1JT7 35 A1JT7 C27 C28 C 0 1 Y N N N N N -11.605 -25.499 -6.796 5.899 1.479 -1.166 C27 A1JT7 36 A1JT7 C29 C29 C 0 1 Y N N N N N -11.326 -23.424 -8.013 7.941 0.238 -1.014 C29 A1JT7 37 A1JT7 C30 C30 C 0 1 Y N N N N N -12.630 -23.494 -8.455 8.651 1.419 -0.902 C30 A1JT7 38 A1JT7 C31 C31 C 0 1 Y N N N N N -13.425 -24.560 -8.081 7.985 2.630 -0.925 C31 A1JT7 39 A1JT7 C32 C32 C 0 1 Y N N N N N -12.918 -25.559 -7.256 6.609 2.660 -1.049 C32 A1JT7 40 A1JT7 O5 O5 O 0 1 N N N N N N -9.742 -28.045 -3.400 1.751 1.554 -1.180 O5 A1JT7 41 A1JT7 H8 H1 H 0 1 N N N N N N -11.303 -29.083 0.096 1.001 -0.443 -0.634 H8 A1JT7 42 A1JT7 H30 H2 H 0 1 N N N N N N -9.444 -24.624 4.108 -0.062 -4.840 3.876 H30 A1JT7 43 A1JT7 H3 H3 H 0 1 N N N N N N -16.641 -31.350 -1.943 -2.836 6.129 1.667 H3 A1JT7 44 A1JT7 H4 H4 H 0 1 N N N N N N -15.714 -29.075 -1.848 -0.884 4.752 2.330 H4 A1JT7 45 A1JT7 H5 H5 H 0 1 N N N N N N -13.143 -27.856 -4.090 0.115 2.685 2.671 H5 A1JT7 46 A1JT7 H6 H6 H 0 1 N N N N N N -14.255 -27.443 -2.741 -0.927 1.247 2.800 H6 A1JT7 47 A1JT7 H7 H7 H 0 1 N N N N N N -11.673 -28.949 -2.211 -0.260 2.130 0.028 H7 A1JT7 48 A1JT7 H9 H8 H 0 1 N N N N N N -13.692 -28.125 1.646 -1.213 -2.226 0.305 H9 A1JT7 49 A1JT7 H12 H9 H 0 1 N N N N N N -13.681 -33.847 -4.509 -5.270 1.336 0.636 H12 A1JT7 50 A1JT7 H13 H10 H 0 1 N N N N N N -13.536 -32.682 -5.869 -6.190 2.825 0.958 H13 A1JT7 51 A1JT7 H15 H11 H 0 1 N N N N N N -10.025 -32.963 -3.641 -5.504 1.819 -2.932 H15 A1JT7 52 A1JT7 H18 H12 H 0 1 N N N N N N -11.759 -34.280 -0.900 -6.536 -1.036 -2.533 H18 A1JT7 53 A1JT7 H19 H13 H 0 1 N N N N N N -10.097 -33.853 -1.432 -5.196 -0.290 -3.437 H19 A1JT7 54 A1JT7 H25 H14 H 0 1 N N N N N N -12.472 -26.046 2.150 1.370 -2.028 1.664 H25 A1JT7 55 A1JT7 H26 H15 H 0 1 N N N N N N -9.834 -27.005 1.143 2.313 -4.827 0.964 H26 A1JT7 56 A1JT7 H27 H16 H 0 1 N N N N N N -10.977 -25.804 0.451 3.235 -3.470 1.691 H27 A1JT7 57 A1JT7 H28 H17 H 0 1 N N N N N N -8.590 -25.162 1.818 2.427 -3.901 3.853 H28 A1JT7 58 A1JT7 H29 H18 H 0 1 N N N N N N -9.971 -24.039 1.579 2.233 -5.559 3.211 H29 A1JT7 59 A1JT7 H34 H19 H 0 1 N N N N N N -10.283 -27.133 -6.466 4.073 0.652 -1.898 H34 A1JT7 60 A1JT7 H35 H20 H 0 1 N N N N N N -11.861 -27.252 -5.617 4.105 2.430 -1.823 H35 A1JT7 61 A1JT7 H36 H21 H 0 1 N N N N N N -9.795 -24.357 -6.852 6.011 -0.654 -1.237 H36 A1JT7 62 A1JT7 H1 H22 H 0 1 N N N N N N -12.571 -30.272 -4.464 -3.006 1.222 1.222 H1 A1JT7 63 A1JT7 H2 H23 H 0 1 N N N N N N -15.555 -33.082 -3.302 -4.874 5.044 0.813 H2 A1JT7 64 A1JT7 H10 H24 H 0 1 N N N N N N -13.390 -30.244 2.991 -0.682 -1.292 -2.353 H10 A1JT7 65 A1JT7 H11 H25 H 0 1 N N N N N N -12.737 -31.795 0.061 -2.914 -0.736 -2.560 H11 A1JT7 66 A1JT7 H14 H26 H 0 1 N N N N N N -11.222 -33.039 -5.612 -5.554 3.659 -1.409 H14 A1JT7 67 A1JT7 H16 H27 H 0 1 N N N N N N -11.425 -31.507 -1.930 -4.259 0.108 -0.945 H16 A1JT7 68 A1JT7 H17 H28 H 0 1 N N N N N N -12.732 -32.706 -2.213 -5.998 0.057 -0.565 H17 A1JT7 69 A1JT7 H20 H29 H 0 1 N N N N N N -10.689 -33.474 1.029 -4.884 -2.444 -1.296 H20 A1JT7 70 A1JT7 H21 H30 H 0 1 N N N N N N -9.907 -32.122 0.142 -4.815 -2.726 -3.055 H21 A1JT7 71 A1JT7 H22 H31 H 0 1 N N N N N N -14.255 -31.535 1.251 -0.373 -3.426 -3.381 H22 A1JT7 72 A1JT7 H23 H32 H 0 1 N N N N N N -12.276 -28.113 3.664 0.322 -4.120 -0.305 H23 A1JT7 73 A1JT7 H24 H33 H 0 1 N N N N N N -10.852 -28.550 2.660 1.581 -2.928 -0.707 H24 A1JT7 74 A1JT7 H31 H34 H 0 1 N N N N N N -11.715 -25.976 -2.303 1.865 1.422 1.901 H31 A1JT7 75 A1JT7 H32 H35 H 0 1 N N N N N N -10.875 -25.133 -4.286 4.077 2.326 0.655 H32 A1JT7 76 A1JT7 H33 H36 H 0 1 N N N N N N -9.316 -25.871 -4.788 4.045 0.548 0.580 H33 A1JT7 77 A1JT7 H37 H37 H 0 1 N N N N N N -10.700 -22.594 -8.306 8.461 -0.709 -0.996 H37 A1JT7 78 A1JT7 H38 H38 H 0 1 N N N N N N -13.029 -22.718 -9.092 9.725 1.395 -0.796 H38 A1JT7 79 A1JT7 H39 H39 H 0 1 N N N N N N -14.445 -24.618 -8.431 8.540 3.553 -0.837 H39 A1JT7 80 A1JT7 H40 H40 H 0 1 N N N N N N -13.548 -26.388 -6.970 6.088 3.606 -1.063 H40 A1JT7 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JT7 C1 C2 DOUB Y N 1 A1JT7 C2 C3 SING Y N 2 A1JT7 C3 C4 DOUB Y N 3 A1JT7 C4 C5 SING Y N 4 A1JT7 C5 C6 DOUB Y N 5 A1JT7 C1 C6 SING Y N 6 A1JT7 C6 C7 SING N N 7 A1JT7 C7 C8 SING N N 8 A1JT7 C8 C9 SING N N 9 A1JT7 C9 O1 DOUB N N 10 A1JT7 C9 N1 SING N N 11 A1JT7 N1 C10 SING N N 12 A1JT7 C10 C11 SING N N 13 A1JT7 C11 C12 SING N N 14 A1JT7 C12 N2 SING N N 15 A1JT7 C2 C13 SING N N 16 A1JT7 C13 C14 SING N N 17 A1JT7 C14 C15 DOUB N Z 18 A1JT7 C15 C16 SING N N 19 A1JT7 C16 C17 SING N N 20 A1JT7 C17 C18 SING N N 21 A1JT7 N2 C18 SING N N 22 A1JT7 C11 O2 SING N N 23 A1JT7 C12 O3 DOUB N N 24 A1JT7 C10 C19 SING N N 25 A1JT7 C19 C20 SING N N 26 A1JT7 C20 C21 SING N N 27 A1JT7 C21 C22 SING N N 28 A1JT7 C22 N3 SING N N 29 A1JT7 N3 C23 SING N N 30 A1JT7 C20 C23 SING N N 31 A1JT7 C23 O4 DOUB N N 32 A1JT7 C8 N4 SING N N 33 A1JT7 N4 C24 SING N N 34 A1JT7 C24 C25 SING N N 35 A1JT7 C25 C26 SING N N 36 A1JT7 C26 C27 SING N N 37 A1JT7 C27 C28 DOUB Y N 38 A1JT7 C28 C29 SING Y N 39 A1JT7 C29 C30 DOUB Y N 40 A1JT7 C30 C31 SING Y N 41 A1JT7 C31 C32 DOUB Y N 42 A1JT7 C27 C32 SING Y N 43 A1JT7 C24 O5 DOUB N N 44 A1JT7 N1 H8 SING N N 45 A1JT7 N3 H30 SING N N 46 A1JT7 C4 H3 SING N N 47 A1JT7 C5 H4 SING N N 48 A1JT7 C7 H5 SING N N 49 A1JT7 C7 H6 SING N N 50 A1JT7 C8 H7 SING N N 51 A1JT7 C10 H9 SING N N 52 A1JT7 C13 H12 SING N N 53 A1JT7 C13 H13 SING N N 54 A1JT7 C15 H15 SING N N 55 A1JT7 C17 H18 SING N N 56 A1JT7 C17 H19 SING N N 57 A1JT7 C20 H25 SING N N 58 A1JT7 C21 H26 SING N N 59 A1JT7 C21 H27 SING N N 60 A1JT7 C22 H28 SING N N 61 A1JT7 C22 H29 SING N N 62 A1JT7 C26 H34 SING N N 63 A1JT7 C26 H35 SING N N 64 A1JT7 C28 H36 SING N N 65 A1JT7 C1 H1 SING N N 66 A1JT7 C3 H2 SING N N 67 A1JT7 C11 H10 SING N N 68 A1JT7 N2 H11 SING N N 69 A1JT7 C14 H14 SING N N 70 A1JT7 C16 H16 SING N N 71 A1JT7 C16 H17 SING N N 72 A1JT7 C18 H20 SING N N 73 A1JT7 C18 H21 SING N N 74 A1JT7 O2 H22 SING N N 75 A1JT7 C19 H23 SING N N 76 A1JT7 C19 H24 SING N N 77 A1JT7 N4 H31 SING N N 78 A1JT7 C25 H32 SING N N 79 A1JT7 C25 H33 SING N N 80 A1JT7 C29 H37 SING N N 81 A1JT7 C30 H38 SING N N 82 A1JT7 C31 H39 SING N N 83 A1JT7 C32 H40 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JT7 InChI InChI 1.06 "InChI=1S/C32H40N4O5/c37-28(15-14-22-9-5-3-6-10-22)35-27-20-24-13-8-12-23(19-24)11-4-1-2-7-17-33-32(41)29(38)26(36-31(27)40)21-25-16-18-34-30(25)39/h1,3-6,8-10,12-13,19,25-27,29,38H,2,7,11,14-18,20-21H2,(H,33,41)(H,34,39)(H,35,37)(H,36,40)/b4-1-/t25-,26+,27+,29+/m0/s1" A1JT7 InChIKey InChI 1.06 ZXPXYVKBPYWZRC-NNTPMLDPSA-N A1JT7 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1[C@@H](C[C@@H]2CCNC2=O)NC(=O)[C@@H](Cc3cccc(C\C=C/CCCNC1=O)c3)NC(=O)CCc4ccccc4" A1JT7 SMILES CACTVS 3.385 "O[CH]1[CH](C[CH]2CCNC2=O)NC(=O)[CH](Cc3cccc(CC=CCCCNC1=O)c3)NC(=O)CCc4ccccc4" A1JT7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCC(=O)N[C@@H]2Cc3cccc(c3)C/C=C\CCCNC(=O)[C@@H]([C@H](NC2=O)C[C@@H]4CCNC4=O)O" A1JT7 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCC(=O)NC2Cc3cccc(c3)CC=CCCCNC(=O)C(C(NC2=O)CC4CCNC4=O)O" # _pdbx_chem_comp_identifier.comp_id A1JT7 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(3~{R},6~{R},7~{R},13~{Z})-7-oxidanyl-4,8-bis(oxidanylidene)-6-[[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]methyl]-5,9-diazabicyclo[14.3.1]icosa-1(19),13,16(20),17-tetraen-3-yl]-3-phenyl-propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JT7 "Create component" 2025-11-10 PDBE A1JT7 "Initial release" 2026-08-19 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1JT7 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C11 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #