data_A1JTF # _chem_comp.id A1JTF _chem_comp.name "4-(4-(3-(9-fluoro-5,6,8,9,10,11-hexahydro-7H-5,9:7,11-dimethanobenzo[9]annulen-7-yl)ureido)piperidine-1-carbonyl)benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H32 F N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-29 _chem_comp.pdbx_modified_date 2026-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 505.580 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JTF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9T3W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JTF C1 C1 C 0 1 N N N N N N 24.152 18.479 40.394 6.275 -1.737 -0.971 C1 A1JTF 1 A1JTF C2 C2 C 0 1 N N N N N N 21.920 17.684 37.685 3.994 -0.028 1.182 C2 A1JTF 2 A1JTF C3 C3 C 0 1 N N R N N N 24.481 18.938 38.782 5.372 -0.633 -1.490 C3 A1JTF 3 A1JTF C7 C4 C 0 1 Y N N N N N 23.588 22.455 37.598 6.955 2.780 -1.830 C7 A1JTF 4 A1JTF C8 C5 C 0 1 Y N N N N N 22.312 22.387 37.550 6.997 3.198 -0.513 C8 A1JTF 5 A1JTF C9 C6 C 0 1 Y N N N N N 21.585 21.311 37.865 6.515 2.376 0.488 C9 A1JTF 6 A1JTF C10 C7 C 0 1 Y N N N N N 22.343 20.015 38.339 5.989 1.138 0.182 C10 A1JTF 7 A1JTF C11 C8 C 0 1 Y N N N N N 23.628 20.066 38.372 5.945 0.715 -1.151 C11 A1JTF 8 A1JTF C12 C9 C 0 1 Y N N N N N 24.355 21.441 37.968 6.429 1.541 -2.144 C12 A1JTF 9 A1JTF C13 C10 C 0 1 N N N N N N 22.997 16.339 39.450 4.476 -2.420 0.626 C13 A1JTF 10 A1JTF C14 C11 C 0 1 N N N N N N 21.689 18.348 39.971 6.356 -0.978 1.425 C14 A1JTF 11 A1JTF C15 C12 C 0 1 N N S N N N 21.539 18.822 38.661 5.464 0.241 1.270 C15 A1JTF 12 A1JTF C16 C13 C 0 1 N N N N N N 24.301 14.745 36.973 1.289 -0.599 0.142 C16 A1JTF 13 A1JTF C19 C14 C 0 1 N N N N N N 27.068 11.596 35.270 -3.406 0.455 -0.734 C19 A1JTF 14 A1JTF C20 C15 C 0 1 N N N N N N 24.897 10.531 34.534 -2.307 2.056 0.886 C20 A1JTF 15 A1JTF C21 C16 C 0 1 N N N N N N 24.034 11.745 34.936 -1.262 0.984 1.214 C21 A1JTF 16 A1JTF C27 C17 C 0 1 N N N N N N 26.709 10.843 32.784 -4.720 1.648 0.953 C27 A1JTF 17 A1JTF C01 C18 C 0 1 Y N N N N N 28.135 11.246 32.255 -5.922 0.913 0.497 C01 A1JTF 18 A1JTF C02 C19 C 0 1 Y N N N N N 29.247 10.772 32.928 -6.753 0.290 1.429 C02 A1JTF 19 A1JTF C03 C20 C 0 1 Y N N N N N 30.532 11.085 32.476 -7.872 -0.395 1.005 C03 A1JTF 20 A1JTF C04 C21 C 0 1 Y N N N N N 30.689 11.860 31.334 -8.173 -0.465 -0.357 C04 A1JTF 21 A1JTF C05 C22 C 0 1 Y N N N N N 29.576 12.334 30.639 -7.341 0.159 -1.288 C05 A1JTF 22 A1JTF C06 C23 C 0 1 Y N N N N N 28.292 12.019 31.090 -6.225 0.848 -0.863 C06 A1JTF 23 A1JTF C07 C24 C 0 1 N N N N N N 32.129 12.155 30.876 -9.373 -1.200 -0.812 C07 A1JTF 24 A1JTF C17 C25 C 0 1 N N N N N N 24.969 12.904 35.231 -1.039 0.102 -0.017 C17 A1JTF 25 A1JTF C18 C26 C 0 1 N N N N N N 26.114 12.473 36.110 -2.349 -0.598 -0.388 C18 A1JTF 26 A1JTF C4 C27 C 0 1 N N N N N N 24.374 17.753 37.847 3.915 -0.774 -1.174 C4 A1JTF 27 A1JTF C5 C28 C 0 1 N N N N N N 22.759 17.535 40.371 5.959 -2.096 0.473 C5 A1JTF 28 A1JTF C6 C29 C 0 1 N N N N N N 23.128 16.823 38.059 3.649 -1.193 0.265 C6 A1JTF 29 A1JTF F01 F1 F 0 1 N N N N N N 22.495 17.145 41.652 6.696 -3.234 0.816 F01 A1JTF 30 A1JTF N1 N1 N 0 1 N N N N N N 23.286 15.796 37.011 2.230 -1.524 0.418 N1 A1JTF 31 A1JTF N2 N2 N 0 1 N N N N N N 24.166 14.006 35.732 -0.017 -0.904 0.283 N2 A1JTF 32 A1JTF N3 N3 N 0 1 N N N N N N 26.260 10.974 34.211 -3.522 1.395 0.389 N3 A1JTF 33 A1JTF O01 O1 O 0 1 N N N N N N 32.383 13.071 30.049 -10.097 -1.743 -0.002 O01 A1JTF 34 A1JTF O02 O2 O 0 1 N N N N N N 25.954 10.332 32.030 -4.814 2.478 1.835 O02 A1JTF 35 A1JTF O03 O3 O 0 1 N N N N N N 33.061 11.426 31.331 -9.663 -1.267 -2.125 O03 A1JTF 36 A1JTF O1 O4 O 0 1 N N N N N N 25.086 14.541 37.819 1.618 0.510 -0.233 O1 A1JTF 37 A1JTF H4 H1 H 0 1 N N N N N N 24.994 17.898 40.799 6.146 -2.623 -1.592 H4 A1JTF 38 A1JTF H3 H2 H 0 1 N N N N N N 23.991 19.373 41.015 7.312 -1.408 -1.036 H3 A1JTF 39 A1JTF H5 H3 H 0 1 N N N N N N 22.129 18.142 36.707 3.618 -0.246 2.182 H5 A1JTF 40 A1JTF H6 H4 H 0 1 N N N N N N 21.050 17.016 37.599 3.496 0.868 0.812 H6 A1JTF 41 A1JTF H7 H5 H 0 1 N N N N N N 25.528 19.277 38.777 5.441 -0.691 -2.577 H7 A1JTF 42 A1JTF H01 H6 H 0 1 N N N N N N 24.063 23.385 37.323 7.332 3.421 -2.613 H01 A1JTF 43 A1JTF H02 H7 H 0 1 N N N N N N 21.779 23.270 37.229 7.408 4.166 -0.266 H02 A1JTF 44 A1JTF H10 H8 H 0 1 N N N N N N 20.507 21.330 37.796 6.550 2.705 1.516 H10 A1JTF 45 A1JTF H11 H9 H 0 1 N N N N N N 25.431 21.535 37.997 6.396 1.218 -3.174 H11 A1JTF 46 A1JTF H13 H10 H 0 1 N N N N N N 23.920 15.821 39.749 4.213 -3.243 -0.038 H13 A1JTF 47 A1JTF H12 H11 H 0 1 N N N N N N 22.147 15.644 39.520 4.271 -2.706 1.658 H12 A1JTF 48 A1JTF H15 H12 H 0 1 N N N N N N 20.775 17.777 40.193 7.388 -0.691 1.224 H15 A1JTF 49 A1JTF H14 H13 H 0 1 N N N N N N 21.730 19.240 40.613 6.283 -1.343 2.449 H14 A1JTF 50 A1JTF H16 H14 H 0 1 N N N N N N 20.481 19.064 38.484 5.604 0.802 2.195 H16 A1JTF 51 A1JTF H20 H15 H 0 1 N N N N N N 27.859 12.217 34.826 -3.104 0.994 -1.632 H20 A1JTF 52 A1JTF H21 H16 H 0 1 N N N N N N 27.523 10.820 35.903 -4.366 -0.030 -0.905 H21 A1JTF 53 A1JTF H22 H17 H 0 1 N N N N N N 24.934 9.816 35.369 -2.542 2.624 1.786 H22 A1JTF 54 A1JTF H23 H18 H 0 1 N N N N N N 24.453 10.043 33.654 -1.916 2.726 0.120 H23 A1JTF 55 A1JTF H25 H19 H 0 1 N N N N N N 23.443 11.504 35.832 -0.324 1.464 1.492 H25 A1JTF 56 A1JTF H24 H20 H 0 1 N N N N N N 23.357 12.012 34.111 -1.617 0.372 2.042 H24 A1JTF 57 A1JTF H08 H21 H 0 1 N N N N N N 29.121 10.157 33.807 -6.520 0.344 2.482 H08 A1JTF 58 A1JTF H09 H22 H 0 1 N N N N N N 31.398 10.726 33.012 -8.515 -0.877 1.725 H09 A1JTF 59 A1JTF H26 H23 H 0 1 N N N N N N 29.707 12.942 29.756 -7.576 0.108 -2.341 H26 A1JTF 60 A1JTF H27 H24 H 0 1 N N N N N N 27.425 12.367 30.548 -5.582 1.330 -1.584 H27 A1JTF 61 A1JTF H17 H25 H 0 1 N N N N N N 25.402 13.217 34.270 -0.708 0.719 -0.851 H17 A1JTF 62 A1JTF H19 H26 H 0 1 N N N N N N 26.652 13.358 36.480 -2.694 -1.196 0.455 H19 A1JTF 63 A1JTF H18 H27 H 0 1 N N N N N N 25.730 11.894 36.963 -2.184 -1.245 -1.250 H18 A1JTF 64 A1JTF H9 H28 H 0 1 N N N N N N 24.336 18.138 36.817 3.423 0.182 -1.356 H9 A1JTF 65 A1JTF H8 H29 H 0 1 N N N N N N 25.278 17.140 37.975 3.482 -1.519 -1.841 H8 A1JTF 66 A1JTF H1 H30 H 0 1 N N N N N N 22.635 15.822 36.253 1.967 -2.409 0.717 H1 A1JTF 67 A1JTF H2 H31 H 0 1 N N N N N N 23.415 14.296 35.138 -0.279 -1.788 0.582 H2 A1JTF 68 A1JTF H28 H32 H 0 1 N N N N N N 33.889 11.697 30.952 -10.458 -1.759 -2.375 H28 A1JTF 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JTF O02 C27 DOUB N N 1 A1JTF C05 C06 DOUB Y N 2 A1JTF C05 C04 SING Y N 3 A1JTF C07 O01 DOUB N N 4 A1JTF C07 C04 SING N N 5 A1JTF C07 O03 SING N N 6 A1JTF C06 C01 SING Y N 7 A1JTF C02 C01 DOUB Y N 8 A1JTF C02 C03 SING Y N 9 A1JTF F01 C5 SING N N 10 A1JTF C04 C03 DOUB Y N 11 A1JTF C01 C27 SING N N 12 A1JTF C1 C3 SING N N 13 A1JTF C1 C5 SING N N 14 A1JTF C2 C6 SING N N 15 A1JTF C2 C15 SING N N 16 A1JTF C3 C4 SING N N 17 A1JTF C3 C11 SING N N 18 A1JTF C4 C6 SING N N 19 A1JTF C5 C13 SING N N 20 A1JTF C5 C14 SING N N 21 A1JTF C6 C13 SING N N 22 A1JTF C6 N1 SING N N 23 A1JTF C7 C8 DOUB Y N 24 A1JTF C7 C12 SING Y N 25 A1JTF C8 C9 SING Y N 26 A1JTF C9 C10 DOUB Y N 27 A1JTF C10 C11 SING Y N 28 A1JTF C10 C15 SING N N 29 A1JTF C11 C12 DOUB Y N 30 A1JTF C14 C15 SING N N 31 A1JTF N1 C16 SING N N 32 A1JTF C16 N2 SING N N 33 A1JTF C16 O1 DOUB N N 34 A1JTF N2 C17 SING N N 35 A1JTF C17 C18 SING N N 36 A1JTF C17 C21 SING N N 37 A1JTF C18 C19 SING N N 38 A1JTF C19 N3 SING N N 39 A1JTF C20 C21 SING N N 40 A1JTF C20 N3 SING N N 41 A1JTF N3 C27 SING N N 42 A1JTF C1 H4 SING N N 43 A1JTF C1 H3 SING N N 44 A1JTF C2 H5 SING N N 45 A1JTF C2 H6 SING N N 46 A1JTF C3 H7 SING N N 47 A1JTF C7 H01 SING N N 48 A1JTF C8 H02 SING N N 49 A1JTF C9 H10 SING N N 50 A1JTF C12 H11 SING N N 51 A1JTF C13 H13 SING N N 52 A1JTF C13 H12 SING N N 53 A1JTF C14 H15 SING N N 54 A1JTF C14 H14 SING N N 55 A1JTF C15 H16 SING N N 56 A1JTF C19 H20 SING N N 57 A1JTF C19 H21 SING N N 58 A1JTF C20 H22 SING N N 59 A1JTF C20 H23 SING N N 60 A1JTF C21 H25 SING N N 61 A1JTF C21 H24 SING N N 62 A1JTF C02 H08 SING N N 63 A1JTF C03 H09 SING N N 64 A1JTF C05 H26 SING N N 65 A1JTF C06 H27 SING N N 66 A1JTF C17 H17 SING N N 67 A1JTF C18 H19 SING N N 68 A1JTF C18 H18 SING N N 69 A1JTF C4 H9 SING N N 70 A1JTF C4 H8 SING N N 71 A1JTF N1 H1 SING N N 72 A1JTF N2 H2 SING N N 73 A1JTF O03 H28 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JTF InChI InChI 1.06 "InChI=1S/C29H32FN3O4/c30-28-13-20-15-29(17-28,16-21(14-28)24-4-2-1-3-23(20)24)32-27(37)31-22-9-11-33(12-10-22)25(34)18-5-7-19(8-6-18)26(35)36/h1-8,20-22H,9-17H2,(H,35,36)(H2,31,32,37)/t20-,21+,28+,29-" A1JTF InChIKey InChI 1.06 NAMMQXSEBKFLEG-OERYEWLJSA-N A1JTF SMILES_CANONICAL CACTVS 3.385 "OC(=O)c1ccc(cc1)C(=O)N2CCC(CC2)NC(=O)NC34C[C@@H]5CC(F)(C[C@H](C3)c6ccccc56)C4" A1JTF SMILES CACTVS 3.385 "OC(=O)c1ccc(cc1)C(=O)N2CCC(CC2)NC(=O)NC34C[CH]5CC(F)(C[CH](C3)c6ccccc56)C4" A1JTF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)[C@@H]3CC4(C[C@H]2CC(C3)(C4)F)NC(=O)NC5CCN(CC5)C(=O)c6ccc(cc6)C(=O)O" A1JTF SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C3CC4(CC2CC(C3)(C4)F)NC(=O)NC5CCN(CC5)C(=O)c6ccc(cc6)C(=O)O" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JTF "Create component" 2025-10-29 PDBE A1JTF "Modify name" 2025-10-30 PDBE A1JTF "Initial release" 2026-11-11 RCSB #