data_A1JTU # _chem_comp.id A1JTU _chem_comp.name "Fe(III) 2,4-diformyl deuteroporphyrin IX" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H28 Fe N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date 2025-11-05 _chem_comp.pdbx_modified_date 2026-10-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 620.433 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JTU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details MetalCoord _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9SY9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type "metal-containing ligand" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JTU FE FE1 FE ? 0 N N N N N N 8.303 16.379 -3.416 8.397 16.384 -3.126 FE A1JTU 1 A1JTU NA N1 N -1 1 Y N N N N N 7.867 18.402 -3.610 7.909 18.297 -3.510 NA A1JTU 2 A1JTU NB N2 N 0 1 N N N N N N 6.491 16.173 -2.475 6.549 16.097 -2.385 NB A1JTU 3 A1JTU NC N3 N -1 1 N N R N N N 8.697 14.378 -3.195 8.707 14.400 -3.096 NC A1JTU 4 A1JTU ND N4 N 0 1 N N N N N N 10.085 16.611 -4.345 10.072 16.607 -4.219 ND A1JTU 5 A1JTU C1A C1 C 0 1 Y N N N N N 8.641 19.327 -4.202 8.656 19.238 -4.165 C1A A1JTU 6 A1JTU CHA C2 C 0 1 N N N N N N 9.905 19.012 -4.755 9.858 18.956 -4.783 CHA A1JTU 7 A1JTU C4D C3 C 0 1 N N N N N N 10.593 17.790 -4.808 10.554 17.763 -4.777 C4D A1JTU 8 A1JTU C1B C4 C 0 1 N N N N N N 5.546 17.121 -2.203 5.620 17.050 -2.060 C1B A1JTU 9 A1JTU CHB C5 C 0 1 N N N N N N 5.704 18.465 -2.502 5.799 18.394 -2.332 CHB A1JTU 10 A1JTU C4A C6 C 0 1 Y N N N N N 6.762 19.054 -3.164 6.818 18.988 -3.050 C4A A1JTU 11 A1JTU C1C C7 C 0 1 N N N N N N 7.876 13.472 -2.627 7.895 13.427 -2.576 C1C A1JTU 12 A1JTU CHC C8 C 0 1 N N N N N N 6.595 13.755 -2.148 6.623 13.682 -2.100 CHC A1JTU 13 A1JTU C4B C9 C 0 1 N N N N N N 5.932 14.986 -2.037 5.965 14.902 -1.961 C4B A1JTU 14 A1JTU C1D C10 C 0 1 N N N N N N 11.067 15.659 -4.540 11.058 15.680 -4.447 C1D A1JTU 15 A1JTU CHD C11 C 0 1 N N N N N N 10.937 14.319 -4.179 10.959 14.368 -4.021 CHD A1JTU 16 A1JTU C4C C12 C 0 1 N N N N N N 9.852 13.705 -3.530 9.878 13.716 -3.431 C4C A1JTU 17 A1JTU C2A C13 C 0 1 Y N N N N N 7.996 20.553 -4.134 8.033 20.471 -4.126 C2A A1JTU 18 A1JTU CAA C14 C 0 1 N N N N N N 8.484 21.853 -4.705 8.540 21.755 -4.733 CAA A1JTU 19 A1JTU C3A C15 C 0 1 Y N N N N N 6.812 20.376 -3.509 6.877 20.306 -3.432 C3A A1JTU 20 A1JTU CMA C16 C 0 1 N N N N N N 5.753 21.417 -3.224 5.866 21.383 -3.129 CMA A1JTU 21 A1JTU CBA C17 C 0 1 N N N N N N 7.862 22.074 -6.081 8.151 21.957 -6.196 CBA A1JTU 22 A1JTU CGA C18 C 0 1 N N N N N N 8.247 23.379 -6.786 8.711 23.218 -6.801 CGA A1JTU 23 A1JTU O2A O1 O 0 1 N N N N N N 8.819 23.305 -7.903 9.714 23.225 -7.490 O2A A1JTU 24 A1JTU O1A O2 O 0 1 N N N N N N 7.976 24.449 -6.195 8.039 24.330 -6.537 O1A A1JTU 25 A1JTU C2B C19 C 0 1 N N N N N N 4.423 16.564 -1.648 4.492 16.482 -1.468 C2B A1JTU 26 A1JTU CMB C20 C 0 1 N N N N N N 3.165 17.275 -1.229 3.262 17.200 -0.979 CMB A1JTU 27 A1JTU C3B C21 C 0 1 N N N N N N 4.666 15.213 -1.523 4.712 15.091 -1.382 C3B A1JTU 28 A1JTU CAB C22 C 0 1 N N N N N N 3.723 14.265 -0.975 3.770 14.139 -0.813 CAB A1JTU 29 A1JTU OBB O3 O 0 1 N N N N N N 3.917 13.069 -0.890 3.899 12.934 -0.767 OBB A1JTU 30 A1JTU C2C C23 C 0 1 N N N N N N 8.508 12.243 -2.531 8.531 12.185 -2.565 C2C A1JTU 31 A1JTU CMC C24 C 0 1 N N N N N N 7.956 10.979 -1.924 7.968 10.880 -2.064 CMC A1JTU 32 A1JTU C3C C25 C 0 1 N N N N N N 9.771 12.399 -3.075 9.811 12.357 -3.132 C3C A1JTU 33 A1JTU CAC C26 C 0 1 N N N N N N 10.767 11.350 -3.123 10.787 11.292 -3.311 CAC A1JTU 34 A1JTU OBC O4 O 0 1 N N N N N N 11.957 11.585 -3.164 11.912 11.408 -3.751 OBC A1JTU 35 A1JTU C2D C27 C 0 1 N N N N N N 12.162 16.239 -5.131 12.117 16.255 -5.111 C2D A1JTU 36 A1JTU CMD C28 C 0 1 N N N N N N 13.468 15.583 -5.514 13.399 15.600 -5.560 CMD A1JTU 37 A1JTU C3D C29 C 0 1 N N N N N N 11.871 17.557 -5.297 11.803 17.556 -5.330 C3D A1JTU 38 A1JTU CAD C30 C 0 1 N N N N N N 12.803 18.572 -5.905 12.662 18.577 -6.034 CAD A1JTU 39 A1JTU CBD C31 C 0 1 N N N N N N 12.763 18.471 -7.421 12.379 18.725 -7.526 CBD A1JTU 40 A1JTU CGD C32 C 0 1 N N N N N N 13.781 19.375 -8.118 13.191 19.807 -8.191 CGD A1JTU 41 A1JTU O1D O5 O 0 1 N N N N N N 14.494 18.865 -9.012 14.203 19.571 -8.824 O1D A1JTU 42 A1JTU O2D O6 O 0 1 N N N N N N 13.835 20.587 -7.773 12.734 21.042 -8.044 O2D A1JTU 43 A1JTU H1 H1 H 0 1 N N N N N N 10.422 19.844 -5.208 10.232 19.653 -5.300 H1 A1JTU 44 A1JTU H2 H2 H 0 1 N N N N N N 4.911 19.125 -2.181 5.175 18.983 -1.935 H2 A1JTU 45 A1JTU H3 H3 H 0 1 N N N N N N 6.030 12.898 -1.813 6.109 12.924 -1.868 H3 A1JTU 46 A1JTU H4 H4 H 0 1 N N N N N N 11.769 13.676 -4.427 11.736 13.840 -4.117 H4 A1JTU 47 A1JTU H5 H5 H 0 1 N N N N N N 9.580 21.823 -4.799 8.210 22.520 -4.214 H5 A1JTU 48 A1JTU H6 H6 H 0 1 N N N N N N 8.196 22.678 -4.036 9.519 21.785 -4.663 H6 A1JTU 49 A1JTU H7 H7 H 0 1 N N N N N N 5.042 21.456 -4.062 4.975 21.001 -3.087 H7 A1JTU 50 A1JTU H8 H8 H 0 1 N N N N N N 5.217 21.152 -2.301 5.877 22.059 -3.825 H8 A1JTU 51 A1JTU H9 H9 H 0 1 N N N N N N 6.230 22.401 -3.101 6.078 21.797 -2.277 H9 A1JTU 52 A1JTU H10 H10 H 0 1 N N N N N N 6.768 22.065 -5.962 8.479 21.190 -6.720 H10 A1JTU 53 A1JTU H11 H11 H 0 1 N N N N N N 8.168 21.238 -6.728 7.169 21.969 -6.269 H11 A1JTU 54 A1JTU H12 H12 H 0 1 N N N N N N 8.269 25.184 -6.720 7.324 24.255 -6.031 H12 A1JTU 55 A1JTU H13 H13 H 0 1 N N N N N N 2.450 16.546 -0.819 2.477 16.646 -1.114 H13 A1JTU 56 A1JTU H14 H14 H 0 1 N N N N N N 3.406 18.024 -0.460 3.139 18.028 -1.470 H14 A1JTU 57 A1JTU H15 H15 H 0 1 N N N N N N 2.719 17.775 -2.101 3.356 17.399 -0.033 H15 A1JTU 58 A1JTU H16 H16 H 0 1 N N N N N N 2.779 14.647 -0.616 2.985 14.487 -0.429 H16 A1JTU 59 A1JTU H17 H17 H 0 1 N N N N N N 6.928 11.157 -1.576 7.313 11.043 -1.368 H17 A1JTU 60 A1JTU H18 H18 H 0 1 N N N N N N 7.953 10.180 -2.680 8.677 10.331 -1.693 H18 A1JTU 61 A1JTU H19 H19 H 0 1 N N N N N N 8.584 10.676 -1.073 7.545 10.405 -2.798 H19 A1JTU 62 A1JTU H20 H20 H 0 1 N N N N N N 10.439 10.321 -3.122 10.522 10.420 -3.078 H20 A1JTU 63 A1JTU H21 H21 H 0 1 N N N N N N 13.427 14.512 -5.268 13.478 14.710 -5.185 H21 A1JTU 64 A1JTU H22 H22 H 0 1 N N N N N N 13.636 15.705 -6.594 14.158 16.128 -5.265 H22 A1JTU 65 A1JTU H23 H23 H 0 1 N N N N N N 14.292 16.055 -4.959 13.409 15.539 -6.530 H23 A1JTU 66 A1JTU H24 H24 H 0 1 N N N N N N 13.828 18.382 -5.554 12.541 19.453 -5.606 H24 A1JTU 67 A1JTU H25 H25 H 0 1 N N N N N N 12.492 19.582 -5.599 13.611 18.353 -5.916 H25 A1JTU 68 A1JTU H26 H26 H 0 1 N N N N N N 11.756 18.752 -7.763 12.577 17.871 -7.974 H26 A1JTU 69 A1JTU H27 H27 H 0 1 N N N N N N 12.969 17.429 -7.706 11.421 18.914 -7.655 H27 A1JTU 70 A1JTU H28 H28 H 0 1 N N N N N N 14.491 21.036 -8.293 11.998 21.144 -7.573 H28 A1JTU 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_metal_coordination_flag _chem_comp_bond.pdbx_metal_pi_flag A1JTU O1D CGD DOUB N N 1 N N A1JTU CGD O2D SING N N 2 N N A1JTU CGD CBD SING N N 3 N N A1JTU O2A CGA DOUB N N 4 N N A1JTU CBD CAD SING N N 5 N N A1JTU CGA O1A SING N N 6 N N A1JTU CGA CBA SING N N 7 N N A1JTU CBA CAA SING N N 8 N N A1JTU CAD C3D SING N N 9 N N A1JTU CMD C2D SING N N 10 N N A1JTU C3D C2D DOUB N N 11 N N A1JTU C3D C4D SING N N 12 N N A1JTU C2D C1D SING N N 13 N N A1JTU C4D CHA DOUB N N 14 N N A1JTU C4D ND SING N N 15 N N A1JTU CHA C1A SING N N 16 N N A1JTU CAA C2A SING N N 17 N N A1JTU C1D ND DOUB N N 18 N N A1JTU C1D CHD SING N N 19 N N A1JTU ND FE SING N N 20 Y N A1JTU C1A C2A DOUB Y N 21 N N A1JTU C1A NA SING Y N 22 N N A1JTU CHD C4C DOUB N N 23 N N A1JTU C2A C3A SING Y N 24 N N A1JTU NA FE SING N N 25 Y N A1JTU NA C4A SING Y N 26 N N A1JTU C4C NC SING N N 27 N N A1JTU C4C C3C SING N N 28 N N A1JTU C3A CMA SING N N 29 N N A1JTU C3A C4A DOUB Y N 30 N N A1JTU FE NC SING N N 31 Y N A1JTU FE NB SING N N 32 Y N A1JTU NC C1C SING N N 33 N N A1JTU C4A CHB SING N N 34 N N A1JTU OBC CAC DOUB N N 35 N N A1JTU CAC C3C SING N N 36 N N A1JTU C3C C2C DOUB N N 37 N N A1JTU C1C C2C SING N N 38 N N A1JTU C1C CHC DOUB N N 39 N N A1JTU C2C CMC SING N N 40 N N A1JTU CHB C1B DOUB N N 41 N N A1JTU NB C1B SING N N 42 N N A1JTU NB C4B DOUB N N 43 N N A1JTU C1B C2B SING N N 44 N N A1JTU CHC C4B SING N N 45 N N A1JTU C4B C3B SING N N 46 N N A1JTU C2B C3B DOUB N N 47 N N A1JTU C2B CMB SING N N 48 N N A1JTU C3B CAB SING N N 49 N N A1JTU CAB OBB DOUB N N 50 N N A1JTU CHA H1 SING N N 51 N N A1JTU CHB H2 SING N N 52 N N A1JTU CHC H3 SING N N 53 N N A1JTU CHD H4 SING N N 54 N N A1JTU CAA H5 SING N N 55 N N A1JTU CAA H6 SING N N 56 N N A1JTU CMA H7 SING N N 57 N N A1JTU CMA H8 SING N N 58 N N A1JTU CMA H9 SING N N 59 N N A1JTU CBA H10 SING N N 60 N N A1JTU CBA H11 SING N N 61 N N A1JTU O1A H12 SING N N 62 N N A1JTU CMB H13 SING N N 63 N N A1JTU CMB H14 SING N N 64 N N A1JTU CMB H15 SING N N 65 N N A1JTU CAB H16 SING N N 66 N N A1JTU CMC H17 SING N N 67 N N A1JTU CMC H18 SING N N 68 N N A1JTU CMC H19 SING N N 69 N N A1JTU CAC H20 SING N N 70 N N A1JTU CMD H21 SING N N 71 N N A1JTU CMD H22 SING N N 72 N N A1JTU CMD H23 SING N N 73 N N A1JTU CAD H24 SING N N 74 N N A1JTU CAD H25 SING N N 75 N N A1JTU CBD H26 SING N N 76 N N A1JTU CBD H27 SING N N 77 N N A1JTU O2D H28 SING N N 78 N N # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JTU InChI InChI 1.06 "InChI=1S/C32H30N4O6.Fe/c1-15-19(5-7-31(39)40)27-12-28-20(6-8-32(41)42)16(2)25(34-28)10-29-22(14-38)18(4)26(36-29)11-30-21(13-37)17(3)24(35-30)9-23(15)33-27;/h9-14H,5-8H2,1-4H3,(H4,33,34,35,36,37,38,39,40,41,42);/q;+2/p-2/b23-9-,24-9-,25-10-,26-11-,27-12-,28-12-,29-10-,30-11-;" A1JTU InChIKey InChI 1.06 KFUXFRMGJRFWLA-MFKPUVQKSA-L A1JTU SMILES_CANONICAL CACTVS 3.385 "CC1=C(CCC(O)=O)C2=Cc3n4[Fe][N@@]5C(=CC6=NC(=Cc4c(C)c3CCC(O)=O)C(=C6C=O)C)C(=C(C=O)C5=CC1=N2)C" A1JTU SMILES CACTVS 3.385 "CC1=C(CCC(O)=O)C2=Cc3n4[Fe][N]5C(=CC6=NC(=Cc4c(C)c3CCC(O)=O)C(=C6C=O)C)C(=C(C=O)C5=CC1=N2)C" A1JTU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=O)C(=C(C7=C2)C)C=O)C)CCC(=O)O" A1JTU SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=O)C(=C(C7=C2)C)C=O)C)CCC(=O)O" # loop_ _pdbx_chem_comp_atom_coordination.geometry_id _pdbx_chem_comp_atom_coordination.comp_id _pdbx_chem_comp_atom_coordination.atom_id _pdbx_chem_comp_atom_coordination.number _pdbx_chem_comp_atom_coordination.geometry_calculated _pdbx_chem_comp_atom_coordination.geometry_generic _pdbx_chem_comp_atom_coordination.geometry_abbr _pdbx_chem_comp_atom_coordination.provenance 1 A1JTU FE 6 octahedron octahedral OCT FindGeo 1 A1JTU FE 6 octahedral octahedral OCT MetalCoord # _pdbx_chem_comp_atom_coordination_sphere.id 1 _pdbx_chem_comp_atom_coordination_sphere.geometry_id 1 _pdbx_chem_comp_atom_coordination_sphere.comp_id A1JTU _pdbx_chem_comp_atom_coordination_sphere.atom_id FE _pdbx_chem_comp_atom_coordination_sphere.descriptor "@OCT{Fe,N,N,N,N,N,N}" _pdbx_chem_comp_atom_coordination_sphere.provenance MetalCoord # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1JTU _pdbx_chem_comp_pcm.modified_residue_id HIS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Metal coordination" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom FE _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? _pdbx_chem_comp_pcm.position "Amino-acid side chain" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JTU "Create component" 2025-11-05 PDBE A1JTU "Modify aromatic_flag" 2025-12-13 PDBE A1JTU "Other modification" 2026-07-31 RCSB A1JTU "Initial release" 2026-10-21 RCSB #