data_A1JTV # _chem_comp.id A1JTV _chem_comp.name "(2~{S})-3,3-dimethyl-~{N}-[(3~{S},6~{S},7~{R})-7-oxidanyl-4,8-bis(oxidanylidene)-6-[[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]methyl]-5,9-diazabicyclo[14.3.1]icosa-1(19),16(20),17-trien-3-yl]-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H44 F3 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms RK-491 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-05 _chem_comp.pdbx_modified_date 2026-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 639.706 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JTV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9T5F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JTV N1 N1 N 0 1 N N N N N N 21.504 4.873 -30.402 0.797 0.186 1.035 N1 A1JTV 1 A1JTV N3 N2 N 0 1 N N N N N N 16.599 6.126 -25.476 -7.480 0.191 1.513 N3 A1JTV 2 A1JTV C4 C1 C 0 1 Y N N N N N 25.377 6.211 -29.028 2.832 4.019 0.766 C4 A1JTV 3 A1JTV C5 C2 C 0 1 Y N N N N N 24.381 5.395 -29.521 2.026 3.447 1.733 C5 A1JTV 4 A1JTV C6 C3 C 0 1 Y N N N N N 24.284 4.059 -29.126 0.932 2.689 1.360 C6 A1JTV 5 A1JTV C7 C4 C 0 1 N N N N N N 23.172 3.169 -29.633 0.054 2.065 2.414 C7 A1JTV 6 A1JTV C8 C5 C 0 1 N N S N N N 21.749 3.766 -29.489 -0.097 0.568 2.131 C8 A1JTV 7 A1JTV C10 C6 C 0 1 N N S N N N 20.675 3.654 -25.863 -3.354 -1.224 1.325 C10 A1JTV 8 A1JTV C13 C7 C 0 1 N N S N N N 18.467 4.885 -26.066 -5.402 -0.081 0.463 C13 A1JTV 9 A1JTV C15 C8 C 0 1 N N N N N N 17.647 7.126 -25.692 -7.478 1.117 0.375 C15 A1JTV 10 A1JTV C17 C9 C 0 1 N N N N N N 21.886 2.889 -23.793 -3.443 -1.280 -1.153 C17 A1JTV 11 A1JTV C20 C10 C 0 1 N N N N N N 27.061 4.212 -24.221 -0.250 1.327 -3.797 C20 A1JTV 12 A1JTV C21 C11 C 0 1 N N N N N N 25.781 4.722 -23.571 -1.687 0.902 -4.105 C21 A1JTV 13 A1JTV C22 C12 C 0 1 N N N N N N 25.281 3.731 -22.518 -1.816 -0.614 -3.944 C22 A1JTV 14 A1JTV C24 C13 C 0 1 N N N N N N 20.277 5.371 -30.574 2.063 -0.193 1.300 C24 A1JTV 15 A1JTV C26 C14 C 0 1 N N N N N N 19.900 7.919 -30.844 2.443 -2.004 -0.351 C26 A1JTV 16 A1JTV C28 C15 C 0 1 N N N N N N 18.618 5.337 -34.787 6.773 -0.922 0.360 C28 A1JTV 17 A1JTV C1 C16 C 0 1 Y N N N N N 25.230 3.576 -28.229 0.643 2.504 0.021 C1 A1JTV 18 A1JTV C2 C17 C 0 1 Y N N N N N 26.261 4.370 -27.744 1.448 3.077 -0.945 C2 A1JTV 19 A1JTV C3 C18 C 0 1 Y N N N N N 26.314 5.700 -28.154 2.539 3.839 -0.573 C3 A1JTV 20 A1JTV C9 C19 C 0 1 N N N N N N 21.408 4.286 -28.102 -1.523 0.272 1.742 C9 A1JTV 21 A1JTV N2 N3 N 0 1 N N N N N N 20.849 3.389 -27.281 -1.936 -1.033 1.715 N2 A1JTV 22 A1JTV C11 C20 C 0 1 N N R N N N 21.537 2.562 -25.212 -3.402 -2.128 0.092 C11 A1JTV 23 A1JTV C12 C21 C 0 1 N N N N N N 19.197 3.690 -25.449 -3.983 0.131 0.993 C12 A1JTV 24 A1JTV C14 C22 C 0 1 N N N N N N 18.932 6.306 -25.704 -5.997 1.254 -0.042 C14 A1JTV 25 A1JTV C16 C23 C 0 1 N N N N N N 16.994 4.862 -25.684 -6.329 -0.499 1.583 C16 A1JTV 26 A1JTV O1 O1 O 0 1 N N N N N N 21.000 2.975 -22.954 -3.698 -0.096 -1.089 O1 A1JTV 27 A1JTV N4 N4 N 0 1 N N N N N N 23.184 3.107 -23.598 -3.186 -1.876 -2.359 N4 A1JTV 28 A1JTV C18 C24 C 0 1 N N N N N N 27.256 3.825 -26.750 1.132 2.875 -2.405 C18 A1JTV 29 A1JTV C19 C25 C 0 1 N N N N N N 27.460 4.781 -25.573 -0.234 2.200 -2.540 C19 A1JTV 30 A1JTV C23 C26 C 0 1 N N N N N N 23.775 3.631 -22.374 -3.246 -0.963 -3.526 C23 A1JTV 31 A1JTV O2 O2 O 0 1 N N N N N N 22.764 2.419 -25.921 -4.570 -2.949 0.148 O2 A1JTV 32 A1JTV O3 O3 O 0 1 N N N N N N 21.615 5.458 -27.777 -2.287 1.170 1.460 O3 A1JTV 33 A1JTV O4 O4 O 0 1 N N N N N N 16.282 3.821 -25.638 -6.068 -1.332 2.426 O4 A1JTV 34 A1JTV C25 C27 C 0 1 N N S N N N 20.184 6.553 -31.542 2.957 -0.666 0.182 C25 A1JTV 35 A1JTV O5 O5 O 0 1 N N N N N N 19.288 4.920 -29.968 2.483 -0.154 2.437 O5 A1JTV 36 A1JTV N5 N5 N 0 1 N N N N N N 19.235 6.200 -32.587 4.323 -0.833 0.687 N5 A1JTV 37 A1JTV C27 C28 C 0 1 N N N N N N 19.646 5.955 -33.833 5.369 -0.750 -0.159 C27 A1JTV 38 A1JTV O6 O6 O 0 1 N N N N N N 20.754 6.158 -34.288 5.180 -0.538 -1.338 O6 A1JTV 39 A1JTV C29 C29 C 0 1 N N N N N N 19.825 9.022 -31.907 1.064 -1.806 -0.982 C29 A1JTV 40 A1JTV C30 C30 C 0 1 N N N N N N 18.599 7.923 -30.034 3.414 -2.540 -1.405 C30 A1JTV 41 A1JTV C31 C31 C 0 1 N N N N N N 21.067 8.242 -29.903 2.338 -3.006 0.802 C31 A1JTV 42 A1JTV F1 F1 F 0 1 N N N N N N 19.090 5.310 -36.015 7.680 -0.795 -0.698 F1 A1JTV 43 A1JTV F2 F2 F 0 1 N N N N N N 18.326 4.071 -34.464 7.038 0.059 1.322 F2 A1JTV 44 A1JTV F3 F3 F 0 1 N N N N N N 17.526 6.049 -34.835 6.905 -2.189 0.938 F3 A1JTV 45 A1JTV H8 H1 H 0 1 N N N N N N 22.269 5.268 -30.910 0.477 0.202 0.119 H8 A1JTV 46 A1JTV H19 H2 H 0 1 N N N N N N 15.669 6.365 -25.197 -8.216 0.092 2.137 H19 A1JTV 47 A1JTV H3 H3 H 0 1 N N N N N N 25.424 7.248 -29.325 3.687 4.611 1.057 H3 A1JTV 48 A1JTV H4 H4 H 0 1 N N N N N N 23.665 5.795 -30.223 2.252 3.591 2.779 H4 A1JTV 49 A1JTV H5 H5 H 0 1 N N N N N N 23.353 2.968 -30.699 0.507 2.205 3.395 H5 A1JTV 50 A1JTV H6 H6 H 0 1 N N N N N N 23.206 2.224 -29.071 -0.928 2.538 2.396 H6 A1JTV 51 A1JTV H7 H7 H 0 1 N N N N N N 21.036 2.962 -29.724 0.161 0.002 3.025 H7 A1JTV 52 A1JTV H10 H8 H 0 1 N N N N N N 21.121 4.630 -25.621 -3.900 -1.693 2.144 H10 A1JTV 53 A1JTV H14 H9 H 0 1 N N N N N N 18.530 4.785 -27.160 -5.406 -0.826 -0.333 H14 A1JTV 54 A1JTV H17 H10 H 0 1 N N N N N N 17.660 7.863 -24.876 -8.065 0.707 -0.447 H17 A1JTV 55 A1JTV H18 H11 H 0 1 N N N N N N 17.503 7.644 -26.652 -7.877 2.086 0.676 H18 A1JTV 56 A1JTV H25 H12 H 0 1 N N N N N N 26.952 3.124 -24.345 0.363 0.441 -3.631 H25 A1JTV 57 A1JTV H26 H13 H 0 1 N N N N N N 27.886 4.421 -23.524 0.150 1.893 -4.638 H26 A1JTV 58 A1JTV H27 H14 H 0 1 N N N N N N 25.981 5.691 -23.090 -2.369 1.399 -3.415 H27 A1JTV 59 A1JTV H28 H15 H 0 1 N N N N N N 25.009 4.849 -24.344 -1.937 1.181 -5.128 H28 A1JTV 60 A1JTV H29 H16 H 0 1 N N N N N N 25.662 2.734 -22.784 -1.586 -1.101 -4.892 H29 A1JTV 61 A1JTV H30 H17 H 0 1 N N N N N N 25.694 4.034 -21.545 -1.120 -0.960 -3.180 H30 A1JTV 62 A1JTV H1 H18 H 0 1 N N N N N N 25.161 2.550 -27.899 -0.209 1.908 -0.270 H1 A1JTV 63 A1JTV H2 H19 H 0 1 N N N N N N 27.100 6.341 -27.782 3.169 4.287 -1.328 H2 A1JTV 64 A1JTV H9 H20 H 0 1 N N N N N N 20.543 2.513 -27.653 -1.349 -1.773 1.934 H9 A1JTV 65 A1JTV H11 H21 H 0 1 N N N N N N 20.977 1.616 -25.234 -2.514 -2.761 0.071 H11 A1JTV 66 A1JTV H12 H22 H 0 1 N N N N N N 18.710 2.762 -25.784 -4.019 0.745 1.893 H12 A1JTV 67 A1JTV H13 H23 H 0 1 N N N N N N 19.135 3.761 -24.353 -3.383 0.634 0.234 H13 A1JTV 68 A1JTV H15 H24 H 0 1 N N N N N N 19.413 6.319 -24.715 -5.528 2.103 0.456 H15 A1JTV 69 A1JTV H16 H25 H 0 1 N N N N N N 19.634 6.691 -26.458 -5.903 1.338 -1.125 H16 A1JTV 70 A1JTV H20 H26 H 0 1 N N N N N N 23.804 2.894 -24.353 -2.980 -2.820 -2.443 H20 A1JTV 71 A1JTV H21 H27 H 0 1 N N N N N N 26.887 2.862 -26.367 1.111 3.841 -2.909 H21 A1JTV 72 A1JTV H22 H28 H 0 1 N N N N N N 28.220 3.673 -27.257 1.896 2.244 -2.859 H22 A1JTV 73 A1JTV H23 H29 H 0 1 N N N N N N 28.525 5.051 -25.531 -1.010 2.961 -2.618 H23 A1JTV 74 A1JTV H24 H30 H 0 1 N N N N N N 26.859 5.684 -25.756 -0.421 1.579 -1.664 H24 A1JTV 75 A1JTV H31 H31 H 0 1 N N N N N N 23.534 2.958 -21.538 -3.780 -0.053 -3.252 H31 A1JTV 76 A1JTV H32 H32 H 0 1 N N N N N N 23.363 4.630 -22.171 -3.759 -1.457 -4.351 H32 A1JTV 77 A1JTV H33 H33 H 0 1 N N N N N N 23.290 1.742 -25.511 -4.666 -3.549 -0.604 H33 A1JTV 78 A1JTV H34 H34 H 0 1 N N N N N N 21.173 6.649 -32.014 2.955 0.071 -0.621 H34 A1JTV 79 A1JTV H35 H35 H 0 1 N N N N N N 18.261 6.140 -32.369 4.474 -1.002 1.630 H35 A1JTV 80 A1JTV H36 H36 H 0 1 N N N N N N 19.625 9.988 -31.420 0.698 -2.760 -1.363 H36 A1JTV 81 A1JTV H37 H37 H 0 1 N N N N N N 20.781 9.075 -32.448 0.372 -1.426 -0.231 H37 A1JTV 82 A1JTV H38 H38 H 0 1 N N N N N N 19.015 8.794 -32.616 1.139 -1.092 -1.802 H38 A1JTV 83 A1JTV H39 H39 H 0 1 N N N N N N 18.459 8.910 -29.570 3.490 -1.827 -2.226 H39 A1JTV 84 A1JTV H40 H40 H 0 1 N N N N N N 17.751 7.708 -30.701 4.397 -2.682 -0.955 H40 A1JTV 85 A1JTV H41 H41 H 0 1 N N N N N N 18.653 7.154 -29.250 3.048 -3.494 -1.784 H41 A1JTV 86 A1JTV H42 H42 H 0 1 N N N N N N 20.880 9.204 -29.403 2.059 -3.983 0.409 H42 A1JTV 87 A1JTV H43 H43 H 0 1 N N N N N N 21.159 7.448 -29.147 3.300 -3.079 1.309 H43 A1JTV 88 A1JTV H44 H44 H 0 1 N N N N N N 21.999 8.305 -30.484 1.580 -2.668 1.508 H44 A1JTV 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JTV C1 C2 DOUB Y N 1 A1JTV C2 C3 SING Y N 2 A1JTV C3 C4 DOUB Y N 3 A1JTV C4 C5 SING Y N 4 A1JTV C5 C6 DOUB Y N 5 A1JTV C1 C6 SING Y N 6 A1JTV C6 C7 SING N N 7 A1JTV C7 C8 SING N N 8 A1JTV C8 C9 SING N N 9 A1JTV C8 N1 SING N N 10 A1JTV C9 N2 SING N N 11 A1JTV N2 C10 SING N N 12 A1JTV C10 C11 SING N N 13 A1JTV C10 C12 SING N N 14 A1JTV C12 C13 SING N N 15 A1JTV C13 C14 SING N N 16 A1JTV C14 C15 SING N N 17 A1JTV C15 N3 SING N N 18 A1JTV N3 C16 SING N N 19 A1JTV C13 C16 SING N N 20 A1JTV C11 C17 SING N N 21 A1JTV C17 O1 DOUB N N 22 A1JTV C17 N4 SING N N 23 A1JTV C2 C18 SING N N 24 A1JTV C18 C19 SING N N 25 A1JTV C19 C20 SING N N 26 A1JTV C20 C21 SING N N 27 A1JTV C21 C22 SING N N 28 A1JTV C22 C23 SING N N 29 A1JTV C11 O2 SING N N 30 A1JTV N4 C23 SING N N 31 A1JTV C9 O3 DOUB N N 32 A1JTV C16 O4 DOUB N N 33 A1JTV N1 C24 SING N N 34 A1JTV C24 C25 SING N N 35 A1JTV C24 O5 DOUB N N 36 A1JTV C25 C26 SING N N 37 A1JTV C25 N5 SING N N 38 A1JTV N5 C27 SING N N 39 A1JTV C27 C28 SING N N 40 A1JTV C27 O6 DOUB N N 41 A1JTV C26 C29 SING N N 42 A1JTV C26 C30 SING N N 43 A1JTV C26 C31 SING N N 44 A1JTV C28 F1 SING N N 45 A1JTV C28 F2 SING N N 46 A1JTV C28 F3 SING N N 47 A1JTV N1 H8 SING N N 48 A1JTV N3 H19 SING N N 49 A1JTV C4 H3 SING N N 50 A1JTV C5 H4 SING N N 51 A1JTV C7 H5 SING N N 52 A1JTV C7 H6 SING N N 53 A1JTV C8 H7 SING N N 54 A1JTV C10 H10 SING N N 55 A1JTV C13 H14 SING N N 56 A1JTV C15 H17 SING N N 57 A1JTV C15 H18 SING N N 58 A1JTV C20 H25 SING N N 59 A1JTV C20 H26 SING N N 60 A1JTV C21 H27 SING N N 61 A1JTV C21 H28 SING N N 62 A1JTV C22 H29 SING N N 63 A1JTV C22 H30 SING N N 64 A1JTV C1 H1 SING N N 65 A1JTV C3 H2 SING N N 66 A1JTV N2 H9 SING N N 67 A1JTV C11 H11 SING N N 68 A1JTV C12 H12 SING N N 69 A1JTV C12 H13 SING N N 70 A1JTV C14 H15 SING N N 71 A1JTV C14 H16 SING N N 72 A1JTV N4 H20 SING N N 73 A1JTV C18 H21 SING N N 74 A1JTV C18 H22 SING N N 75 A1JTV C19 H23 SING N N 76 A1JTV C19 H24 SING N N 77 A1JTV C23 H31 SING N N 78 A1JTV C23 H32 SING N N 79 A1JTV O2 H33 SING N N 80 A1JTV C25 H34 SING N N 81 A1JTV N5 H35 SING N N 82 A1JTV C29 H36 SING N N 83 A1JTV C29 H37 SING N N 84 A1JTV C29 H38 SING N N 85 A1JTV C30 H39 SING N N 86 A1JTV C30 H40 SING N N 87 A1JTV C30 H41 SING N N 88 A1JTV C31 H42 SING N N 89 A1JTV C31 H43 SING N N 90 A1JTV C31 H44 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JTV InChI InChI 1.06 "InChI=1S/C31H44F3N5O6/c1-30(2,3)24(39-29(45)31(32,33)34)28(44)38-22-16-19-11-8-10-18(15-19)9-6-4-5-7-13-35-27(43)23(40)21(37-26(22)42)17-20-12-14-36-25(20)41/h8,10-11,15,20-24,40H,4-7,9,12-14,16-17H2,1-3H3,(H,35,43)(H,36,41)(H,37,42)(H,38,44)(H,39,45)/t20-,21-,22-,23+,24+/m0/s1" A1JTV InChIKey InChI 1.06 MIMWTYDWZWDXBX-ZROJVYTPSA-N A1JTV SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N[C@H]1Cc2cccc(CCCCCCNC(=O)[C@H](O)[C@H](C[C@@H]3CCNC3=O)NC1=O)c2" A1JTV SMILES CACTVS 3.385 "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N[CH]1Cc2cccc(CCCCCCNC(=O)[CH](O)[CH](C[CH]3CCNC3=O)NC1=O)c2" A1JTV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)[C@@H](C(=O)N[C@H]1Cc2cccc(c2)CCCCCCNC(=O)[C@@H]([C@@H](NC1=O)C[C@@H]3CCNC3=O)O)NC(=O)C(F)(F)F" A1JTV SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C(C(=O)NC1Cc2cccc(c2)CCCCCCNC(=O)C(C(NC1=O)CC3CCNC3=O)O)NC(=O)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1JTV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-3,3-dimethyl-~{N}-[(3~{S},6~{S},7~{R})-7-oxidanyl-4,8-bis(oxidanylidene)-6-[[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]methyl]-5,9-diazabicyclo[14.3.1]icosa-1(19),16(20),17-trien-3-yl]-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JTV "Create component" 2025-11-05 PDBE A1JTV "Modify PCM" 2025-11-05 PDBE A1JTV "Initial release" 2026-08-19 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JTV _pdbx_chem_comp_synonyms.name RK-491 _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1JTV _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C11 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #