data_A1JU9 # _chem_comp.id A1JU9 _chem_comp.name "(1~{S},5~{S},6~{R})-3-[7-(8-ethynyl-3-oxidanyl-naphthalen-1-yl)-6,8-bis(fluoranyl)-2-[[(2~{R},8~{S})-2-fluoranyl-1,2,3,5,6,7-hexahydropyrrolizin-8-yl]methoxy]quinazolin-4-yl]-1,5-dimethyl-3,8-diazabicyclo[3.2.1]octan-6-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H36 F3 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "HYDROXYETHYLAMINE BACE INHIBITOR" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-26 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 643.698 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JU9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9TC5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JU9 C1 C1 C 0 1 N N N N N N 24.711 -0.634 -21.922 3.500 3.640 -2.787 C1 A1JU9 1 A1JU9 C2 C2 C 0 1 N N S N N N 25.183 0.761 -22.334 2.807 3.513 -1.429 C2 A1JU9 2 A1JU9 C3 C3 C 0 1 N N N N N N 25.165 1.769 -21.167 2.880 2.076 -0.861 C3 A1JU9 3 A1JU9 C6 C4 C 0 1 N N S N N N 26.918 2.263 -22.819 2.893 3.794 0.882 C6 A1JU9 4 A1JU9 C7 C5 C 0 1 N N N N N N 28.406 2.548 -23.011 3.683 4.235 2.116 C7 A1JU9 5 A1JU9 C8 C6 C 0 1 N N N N N N 26.155 2.908 -23.973 1.394 4.235 0.919 C8 A1JU9 6 A1JU9 C10 C7 C 0 1 N N N N N N 24.357 1.274 -23.515 1.324 3.914 -1.491 C10 A1JU9 7 A1JU9 C11 C8 C 0 1 Y N N N N N 23.768 3.592 -23.789 0.583 2.237 -0.012 C11 A1JU9 8 A1JU9 C13 C9 C 0 1 Y N N N N N 23.236 5.645 -22.966 1.575 0.158 0.218 C13 A1JU9 9 A1JU9 C15 C10 C 0 1 N N N N N N 25.036 6.928 -22.084 2.582 -1.978 0.454 C15 A1JU9 10 A1JU9 C16 C11 C 0 1 N N S N N N 25.319 8.409 -21.818 3.968 -2.627 0.467 C16 A1JU9 11 A1JU9 C19 C12 C 0 1 N N N N N N 26.321 10.004 -23.345 4.566 -4.431 1.927 C19 A1JU9 12 A1JU9 C21 C13 C 0 1 N N N N N N 23.899 10.146 -22.810 4.517 -4.767 -0.468 C21 A1JU9 13 A1JU9 C22 C14 C 0 1 N N R N N N 23.923 10.333 -21.292 4.453 -3.708 -1.645 C22 A1JU9 14 A1JU9 C24 C15 C 0 1 N N N N N N 24.368 8.975 -20.735 4.698 -2.386 -0.871 C24 A1JU9 15 A1JU9 C26 C16 C 0 1 Y N N N N N 21.493 4.447 -23.865 -0.728 0.222 0.347 C26 A1JU9 16 A1JU9 C27 C17 C 0 1 Y N N N N N 20.137 4.310 -24.206 -1.968 -0.414 0.502 C27 A1JU9 17 A1JU9 C35 C18 C 0 1 Y N N N N N 17.893 3.404 -26.463 -5.040 -0.386 1.883 C35 A1JU9 18 A1JU9 C36 C19 C 0 1 Y N N N N N 16.594 3.474 -26.925 -6.280 -1.004 2.044 C36 A1JU9 19 A1JU9 C38 C20 C 0 1 Y N N N N N 15.538 3.329 -26.050 -6.936 -1.561 0.969 C38 A1JU9 20 A1JU9 C39 C21 C 0 1 Y N N N N N 15.763 3.109 -24.679 -6.357 -1.508 -0.310 C39 A1JU9 21 A1JU9 C40 C22 C 0 1 Y N N N N N 14.679 2.960 -23.783 -7.009 -2.068 -1.424 C40 A1JU9 22 A1JU9 C42 C23 C 0 1 Y N N N N N 16.162 2.668 -21.948 -5.197 -1.397 -2.841 C42 A1JU9 23 A1JU9 C43 C24 C 0 1 Y N N N N N 17.268 2.805 -22.773 -4.520 -0.831 -1.770 C43 A1JU9 24 A1JU9 C4 C25 C 0 1 N N R N N N 26.343 2.721 -21.450 2.937 2.262 0.670 C4 A1JU9 25 A1JU9 O5 O1 O 0 1 N N N N N N 27.329 2.700 -20.429 4.153 1.722 1.192 O5 A1JU9 26 A1JU9 N9 N1 N 0 1 N N N N N N 24.721 2.613 -24.034 0.689 3.599 -0.203 N9 A1JU9 27 A1JU9 N12 N2 N 0 1 Y N N N N N 24.171 4.723 -23.194 1.663 1.471 0.034 N12 A1JU9 28 A1JU9 O14 O2 O 0 1 N N N N N N 23.643 6.779 -22.371 2.717 -0.570 0.254 O14 A1JU9 29 A1JU9 C17 C26 C 0 1 N N N N N N 26.820 8.614 -21.522 4.827 -2.063 1.617 C17 A1JU9 30 A1JU9 C18 C27 C 0 1 N N N N N N 27.384 9.113 -22.834 5.612 -3.304 2.114 C18 A1JU9 31 A1JU9 N20 N3 N 0 1 N N N N N N 25.057 9.249 -23.068 3.864 -4.087 0.672 N20 A1JU9 32 A1JU9 F23 F1 F 0 1 N N N N N N 24.892 11.292 -20.973 5.464 -3.940 -2.584 F23 A1JU9 33 A1JU9 N25 N4 N 0 1 Y N N N N N 21.944 5.590 -23.255 0.425 -0.465 0.367 N25 A1JU9 34 A1JU9 F28 F2 F 0 1 N N N N N N 19.314 5.337 -23.901 -2.031 -1.751 0.679 F28 A1JU9 35 A1JU9 C29 C28 C 0 1 Y N N N N N 19.648 3.158 -24.827 -3.130 0.345 0.472 C29 A1JU9 36 A1JU9 C30 C29 C 0 1 Y N N N N N 20.541 2.154 -25.108 -3.069 1.737 0.289 C30 A1JU9 37 A1JU9 F31 F3 F 0 1 N N N N N N 20.056 1.051 -25.713 -4.211 2.457 0.263 F31 A1JU9 38 A1JU9 C32 C30 C 0 1 Y N N N N N 21.874 2.247 -24.792 -1.872 2.364 0.111 C32 A1JU9 39 A1JU9 C33 C31 C 0 1 Y N N N N N 22.390 3.400 -24.159 -0.684 1.623 0.147 C33 A1JU9 40 A1JU9 C34 C32 C 0 1 Y N N N N N 18.181 3.186 -25.123 -4.444 -0.318 0.636 C34 A1JU9 41 A1JU9 O37 O3 O 0 1 N N N N N N 16.357 3.686 -28.258 -6.847 -1.059 3.278 O37 A1JU9 42 A1JU9 C41 C33 C 0 1 Y N N N N N 14.889 2.744 -22.444 -6.431 -2.007 -2.656 C41 A1JU9 43 A1JU9 C44 C34 C 0 1 N N N N N N 18.566 2.710 -22.167 -3.249 -0.203 -1.968 C44 A1JU9 44 A1JU9 C45 C35 C 0 1 N N N N N N 19.615 2.630 -21.648 -2.207 0.312 -2.131 C45 A1JU9 45 A1JU9 C46 C36 C 0 1 Y N N N N N 17.099 3.034 -24.182 -5.100 -0.882 -0.481 C46 A1JU9 46 A1JU9 N47 N5 N 0 1 N N N N N N 26.618 0.787 -22.782 3.454 4.348 -0.380 N47 A1JU9 47 A1JU9 H54 H1 H 0 1 N N N N N N 25.313 -0.990 -21.073 3.023 2.971 -3.503 H54 A1JU9 48 A1JU9 H55 H2 H 0 1 N N N N N N 23.652 -0.591 -21.628 3.420 4.668 -3.141 H55 A1JU9 49 A1JU9 H53 H3 H 0 1 N N N N N N 24.828 -1.326 -22.769 4.552 3.372 -2.685 H53 A1JU9 50 A1JU9 H57 H4 H 0 1 N N N N N N 24.215 2.323 -21.148 1.992 1.511 -1.142 H57 A1JU9 51 A1JU9 H56 H5 H 0 1 N N N N N N 25.307 1.252 -20.206 3.778 1.572 -1.218 H56 A1JU9 52 A1JU9 H59 H6 H 0 1 N N N N N N 28.976 2.091 -22.189 3.643 5.320 2.203 H59 A1JU9 53 A1JU9 H60 H7 H 0 1 N N N N N N 28.740 2.123 -23.969 3.248 3.782 3.007 H60 A1JU9 54 A1JU9 H61 H8 H 0 1 N N N N N N 28.574 3.635 -23.014 4.721 3.916 2.016 H61 A1JU9 55 A1JU9 H63 H9 H 0 1 N N N N N N 26.611 2.563 -24.913 0.941 3.909 1.855 H63 A1JU9 56 A1JU9 H62 H10 H 0 1 N N N N N N 26.272 3.998 -23.887 1.331 5.320 0.841 H62 A1JU9 57 A1JU9 H64 H11 H 0 1 N N N N N N 23.305 1.312 -23.197 1.243 4.984 -1.684 H64 A1JU9 58 A1JU9 H65 H12 H 0 1 N N N N N N 24.466 0.553 -24.339 0.829 3.361 -2.289 H65 A1JU9 59 A1JU9 H66 H13 H 0 1 N N N N N N 25.298 6.334 -21.196 1.989 -2.405 -0.354 H66 A1JU9 60 A1JU9 H67 H14 H 0 1 N N N N N N 25.631 6.585 -22.943 2.086 -2.164 1.407 H67 A1JU9 61 A1JU9 H73 H15 H 0 1 N N N N N N 26.443 10.181 -24.424 5.062 -5.398 1.832 H73 A1JU9 62 A1JU9 H72 H16 H 0 1 N N N N N N 26.327 10.967 -22.813 3.867 -4.443 2.763 H72 A1JU9 63 A1JU9 H74 H17 H 0 1 N N N N N N 24.025 11.109 -23.327 3.965 -5.667 -0.737 H74 A1JU9 64 A1JU9 H75 H18 H 0 1 N N N N N N 22.958 9.676 -23.133 5.554 -5.014 -0.236 H75 A1JU9 65 A1JU9 H50 H19 H 0 1 N N N N N N 22.923 10.598 -20.917 3.472 -3.712 -2.121 H50 A1JU9 66 A1JU9 H76 H20 H 0 1 N N N N N N 23.503 8.311 -20.591 4.260 -1.541 -1.402 H76 A1JU9 67 A1JU9 H77 H21 H 0 1 N N N N N N 24.897 9.101 -19.779 5.764 -2.228 -0.705 H77 A1JU9 68 A1JU9 H79 H22 H 0 1 N N N N N N 18.707 3.522 -27.163 -4.543 0.048 2.738 H79 A1JU9 69 A1JU9 H81 H23 H 0 1 N N N N N N 14.526 3.385 -26.422 -7.896 -2.037 1.109 H81 A1JU9 70 A1JU9 H82 H24 H 0 1 N N N N N N 13.668 3.017 -24.159 -7.968 -2.548 -1.301 H82 A1JU9 71 A1JU9 H84 H25 H 0 1 N N N N N N 16.308 2.498 -20.892 -4.760 -1.362 -3.828 H84 A1JU9 72 A1JU9 H48 H26 H 0 1 N N N N N N 25.945 3.740 -21.568 2.077 1.788 1.142 H48 A1JU9 73 A1JU9 H58 H27 H 0 1 N N N N N N 26.943 2.985 -19.609 4.235 0.764 1.086 H58 A1JU9 74 A1JU9 H68 H28 H 0 1 N N N N N N 27.294 7.666 -21.227 5.510 -1.298 1.248 H68 A1JU9 75 A1JU9 H69 H29 H 0 1 N N N N N N 26.964 9.359 -20.725 4.194 -1.662 2.409 H69 A1JU9 76 A1JU9 H71 H30 H 0 1 N N N N N N 27.566 8.279 -23.527 5.888 -3.198 3.163 H71 A1JU9 77 A1JU9 H70 H31 H 0 1 N N N N N N 28.320 9.668 -22.675 6.493 -3.482 1.496 H70 A1JU9 78 A1JU9 H78 H33 H 0 1 N N N N N N 22.537 1.428 -25.030 -1.839 3.434 -0.029 H78 A1JU9 79 A1JU9 H80 H34 H 0 1 N N N N N N 15.420 3.708 -28.414 -7.415 -0.304 3.484 H80 A1JU9 80 A1JU9 H83 H35 H 0 1 N N N N N N 14.045 2.633 -21.779 -6.941 -2.441 -3.503 H83 A1JU9 81 A1JU9 H85 H36 H 0 1 N N N N N N 20.563 2.558 -21.179 -1.274 0.773 -2.276 H85 A1JU9 82 A1JU9 H51 H38 H 0 1 N N N N N N 26.722 0.374 -23.687 3.208 5.320 -0.489 H51 A1JU9 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JU9 O37 C36 SING N N 1 A1JU9 C36 C35 DOUB Y N 2 A1JU9 C36 C38 SING Y N 3 A1JU9 C35 C34 SING Y N 4 A1JU9 C38 C39 DOUB Y N 5 A1JU9 F31 C30 SING N N 6 A1JU9 C34 C29 SING N N 7 A1JU9 C34 C46 DOUB Y N 8 A1JU9 C30 C29 SING Y N 9 A1JU9 C30 C32 DOUB Y N 10 A1JU9 C29 C27 DOUB Y N 11 A1JU9 C32 C33 SING Y N 12 A1JU9 C39 C46 SING Y N 13 A1JU9 C39 C40 SING Y N 14 A1JU9 C27 F28 SING N N 15 A1JU9 C27 C26 SING Y N 16 A1JU9 C46 C43 SING Y N 17 A1JU9 C33 C26 SING Y N 18 A1JU9 C33 C11 DOUB Y N 19 A1JU9 N9 C8 SING N N 20 A1JU9 N9 C11 SING N N 21 A1JU9 N9 C10 SING N N 22 A1JU9 C8 C6 SING N N 23 A1JU9 C26 N25 DOUB Y N 24 A1JU9 C11 N12 SING Y N 25 A1JU9 C40 C41 DOUB Y N 26 A1JU9 C10 C2 SING N N 27 A1JU9 C19 N20 SING N N 28 A1JU9 C19 C18 SING N N 29 A1JU9 N25 C13 SING Y N 30 A1JU9 N12 C13 DOUB Y N 31 A1JU9 N20 C21 SING N N 32 A1JU9 N20 C16 SING N N 33 A1JU9 C7 C6 SING N N 34 A1JU9 C13 O14 SING N N 35 A1JU9 C18 C17 SING N N 36 A1JU9 C6 N47 SING N N 37 A1JU9 C6 C4 SING N N 38 A1JU9 C21 C22 SING N N 39 A1JU9 N47 C2 SING N N 40 A1JU9 C43 C44 SING N N 41 A1JU9 C43 C42 DOUB Y N 42 A1JU9 C41 C42 SING Y N 43 A1JU9 O14 C15 SING N N 44 A1JU9 C2 C1 SING N N 45 A1JU9 C2 C3 SING N N 46 A1JU9 C44 C45 TRIP N N 47 A1JU9 C15 C16 SING N N 48 A1JU9 C16 C17 SING N N 49 A1JU9 C16 C24 SING N N 50 A1JU9 C4 C3 SING N N 51 A1JU9 C4 O5 SING N N 52 A1JU9 C22 F23 SING N N 53 A1JU9 C22 C24 SING N N 54 A1JU9 C1 H54 SING N N 55 A1JU9 C1 H55 SING N N 56 A1JU9 C1 H53 SING N N 57 A1JU9 C3 H57 SING N N 58 A1JU9 C3 H56 SING N N 59 A1JU9 C7 H59 SING N N 60 A1JU9 C7 H60 SING N N 61 A1JU9 C7 H61 SING N N 62 A1JU9 C8 H63 SING N N 63 A1JU9 C8 H62 SING N N 64 A1JU9 C10 H64 SING N N 65 A1JU9 C10 H65 SING N N 66 A1JU9 C15 H66 SING N N 67 A1JU9 C15 H67 SING N N 68 A1JU9 C19 H73 SING N N 69 A1JU9 C19 H72 SING N N 70 A1JU9 C21 H74 SING N N 71 A1JU9 C21 H75 SING N N 72 A1JU9 C22 H50 SING N N 73 A1JU9 C24 H76 SING N N 74 A1JU9 C24 H77 SING N N 75 A1JU9 C35 H79 SING N N 76 A1JU9 C38 H81 SING N N 77 A1JU9 C40 H82 SING N N 78 A1JU9 C42 H84 SING N N 79 A1JU9 C4 H48 SING N N 80 A1JU9 O5 H58 SING N N 81 A1JU9 C17 H68 SING N N 82 A1JU9 C17 H69 SING N N 83 A1JU9 C18 H71 SING N N 84 A1JU9 C18 H70 SING N N 85 A1JU9 C32 H78 SING N N 86 A1JU9 O37 H80 SING N N 87 A1JU9 C41 H83 SING N N 88 A1JU9 C45 H85 SING N N 89 A1JU9 N47 H51 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JU9 InChI InChI 1.06 "InChI=1S/C36H36F3N5O3/c1-4-20-7-5-8-21-11-23(45)12-24(28(20)21)29-26(38)13-25-31(30(29)39)40-33(47-19-36-9-6-10-44(36)16-22(37)14-36)41-32(25)43-17-34(2)15-27(46)35(3,18-43)42-34/h1,5,7-8,11-13,22,27,42,45-46H,6,9-10,14-19H2,2-3H3/t22-,27-,34+,35+,36+/m1/s1" A1JU9 InChIKey InChI 1.06 LGCILZYDWAHERG-KZLNXZCZSA-N A1JU9 SMILES_CANONICAL CACTVS 3.385 "C[C@]12C[C@@H](O)[C@](C)(CN(C1)c3nc(OC[C@@]45CCCN4C[C@H](F)C5)nc6c(F)c(c(F)cc36)c7cc(O)cc8cccc(C#C)c78)N2" A1JU9 SMILES CACTVS 3.385 "C[C]12C[CH](O)[C](C)(CN(C1)c3nc(OC[C]45CCCN4C[CH](F)C5)nc6c(F)c(c(F)cc36)c7cc(O)cc8cccc(C#C)c78)N2" A1JU9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@]12C[C@H]([C@@](N1)(CN(C2)c3c4cc(c(c(c4nc(n3)OC[C@@]56CCCN5C[C@@H](C6)F)F)c7cc(cc8c7c(ccc8)C#C)O)F)C)O" A1JU9 SMILES "OpenEye OEToolkits" 2.0.7 "CC12CC(C(N1)(CN(C2)c3c4cc(c(c(c4nc(n3)OCC56CCCN5CC(C6)F)F)c7cc(cc8c7c(ccc8)C#C)O)F)C)O" # _pdbx_chem_comp_identifier.comp_id A1JU9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{S},5~{S},6~{R})-3-[7-(8-ethynyl-3-oxidanyl-naphthalen-1-yl)-6,8-bis(fluoranyl)-2-[[(2~{R},8~{S})-2-fluoranyl-1,2,3,5,6,7-hexahydropyrrolizin-8-yl]methoxy]quinazolin-4-yl]-1,5-dimethyl-3,8-diazabicyclo[3.2.1]octan-6-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JU9 "Create component" 2025-11-26 PDBE A1JU9 "Initial release" 2026-04-22 RCSB #