data_A1JUJ # _chem_comp.id A1JUJ _chem_comp.name "3-[4-[2-[4-[3-cyano-5-(trifluoromethyl)phenyl]piperazin-1-yl]ethyl]cyclohexyl]-1,1-dimethyl-urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H32 F3 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-13 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.528 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JUJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9T8D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JUJ C10 C1 C 0 1 N N N N N N 176.728 179.022 134.054 -4.069 -1.148 0.293 C10 A1JUJ 1 A1JUJ C11 C2 C 0 1 N N N N N N 177.857 179.056 133.012 -5.527 -1.101 0.754 C11 A1JUJ 2 A1JUJ C18 C3 C 0 1 Y N N N N N 173.773 179.221 141.216 4.359 -0.460 0.341 C18 A1JUJ 3 A1JUJ C15 C4 C 0 1 N N N N N N 174.551 179.154 137.566 0.976 -1.672 1.217 C15 A1JUJ 4 A1JUJ C16 C5 C 0 1 N N N N N N 173.729 179.526 138.785 2.405 -1.745 0.674 C16 A1JUJ 5 A1JUJ C21 C6 C 0 1 N N N N N N 174.236 182.486 143.059 7.270 1.922 -0.064 C21 A1JUJ 6 A1JUJ C20 C7 C 0 1 Y N N N N N 173.832 181.072 142.771 6.444 0.662 -0.074 C20 A1JUJ 7 A1JUJ C26 C8 C 0 1 Y N N N N N 172.649 179.066 143.351 6.241 -1.693 -0.513 C26 A1JUJ 8 A1JUJ C27 C9 C 0 1 N N N N N N 171.830 178.347 144.299 6.820 -2.925 -0.957 C27 A1JUJ 9 A1JUJ C29 C10 C 0 1 Y N N N N N 173.012 178.497 142.134 4.912 -1.657 -0.088 C29 A1JUJ 10 A1JUJ C19 C11 C 0 1 Y N N N N N 174.204 180.495 141.564 5.128 0.698 0.347 C19 A1JUJ 11 A1JUJ C12 C12 C 0 1 N N N N N N 174.538 177.927 134.710 -2.006 0.208 -0.092 C12 A1JUJ 12 A1JUJ C13 C13 C 0 1 N N N N N N 175.036 177.261 135.987 -1.189 -0.638 0.887 C13 A1JUJ 13 A1JUJ C01 C14 C 0 1 N N N N N N 181.473 180.753 129.293 -11.028 0.612 -1.130 C01 A1JUJ 14 A1JUJ C03 C15 C 0 1 N N N N N N 179.995 179.109 128.250 -10.310 -0.052 1.212 C03 A1JUJ 15 A1JUJ C04 C16 C 0 1 N N N N N N 179.361 180.200 130.424 -8.687 0.216 -0.586 C04 A1JUJ 16 A1JUJ C06 C17 C 0 1 N N N N N N 177.346 179.292 131.574 -6.318 -0.155 -0.153 C06 A1JUJ 17 A1JUJ C07 C18 C 0 1 N N N N N N 176.145 178.392 131.248 -5.713 1.248 -0.076 C07 A1JUJ 18 A1JUJ C08 C19 C 0 1 N N N N N N 175.065 178.504 132.331 -4.255 1.201 -0.537 C08 A1JUJ 19 A1JUJ C09 C20 C 0 1 N N N N N N 175.640 178.012 133.658 -3.464 0.255 0.369 C09 A1JUJ 20 A1JUJ C25 C21 C 0 1 Y N N N N N 173.050 180.357 143.666 7.004 -0.524 -0.503 C25 A1JUJ 21 A1JUJ C30 C22 C 0 1 N N N N N N 174.108 177.276 139.729 2.263 0.572 -0.011 C30 A1JUJ 22 A1JUJ C31 C23 C 0 1 N N N N N N 174.600 176.778 138.365 0.834 0.645 0.532 C31 A1JUJ 23 A1JUJ F22 F1 F 0 1 N N N N N N 175.558 182.587 143.085 8.559 1.639 -0.529 F22 A1JUJ 24 A1JUJ F23 F2 F 0 1 N N N N N N 173.762 183.232 142.078 6.674 2.877 -0.894 F23 A1JUJ 25 A1JUJ F24 F3 F 0 1 N N N N N N 173.744 182.930 144.209 7.345 2.421 1.241 F24 A1JUJ 26 A1JUJ N02 N1 N 0 1 N N N N N N 180.223 179.997 129.396 -9.971 0.257 -0.180 N02 A1JUJ 27 A1JUJ N05 N2 N 0 1 N N N N N N 178.374 179.296 130.539 -7.714 -0.110 0.289 N05 A1JUJ 28 A1JUJ N14 N3 N 0 1 N N N N N N 174.218 177.707 137.204 0.211 -0.683 0.445 N14 A1JUJ 29 A1JUJ N17 N4 N 0 1 N N N N N N 174.075 178.728 139.965 3.028 -0.417 0.761 N17 A1JUJ 30 A1JUJ N28 N5 N 0 1 N N N N N N 171.185 177.792 145.073 7.279 -3.903 -1.310 N28 A1JUJ 31 A1JUJ O32 O1 O 0 1 N N N N N N 179.520 181.095 131.256 -8.405 0.473 -1.740 O32 A1JUJ 32 A1JUJ H1 H1 H 0 1 N N N N N N 177.148 178.734 135.029 -3.505 -1.822 0.938 H1 A1JUJ 33 A1JUJ H2 H2 H 0 1 N N N N N N 176.279 180.023 134.129 -4.024 -1.508 -0.735 H2 A1JUJ 34 A1JUJ H3 H3 H 0 1 N N N N N N 178.389 178.094 133.041 -5.958 -2.101 0.699 H3 A1JUJ 35 A1JUJ H4 H4 H 0 1 N N N N N N 178.552 179.868 133.274 -5.572 -0.742 1.782 H4 A1JUJ 36 A1JUJ H5 H5 H 0 1 N N N N N N 175.623 179.246 137.795 0.502 -2.650 1.127 H5 A1JUJ 37 A1JUJ H6 H6 H 0 1 N N N N N N 174.297 179.818 136.726 1.000 -1.375 2.266 H6 A1JUJ 38 A1JUJ H7 H7 H 0 1 N N N N N N 173.901 180.588 139.015 2.982 -2.457 1.265 H7 A1JUJ 39 A1JUJ H8 H8 H 0 1 N N N N N N 172.665 179.369 138.553 2.382 -2.069 -0.366 H8 A1JUJ 40 A1JUJ H9 H9 H 0 1 N N N N N N 172.703 177.489 141.899 4.317 -2.558 -0.094 H9 A1JUJ 41 A1JUJ H10 H10 H 0 1 N N N N N N 174.838 181.045 140.885 4.695 1.629 0.681 H10 A1JUJ 42 A1JUJ H11 H11 H 0 1 N N N N N N 174.192 178.944 134.948 -1.602 1.220 -0.122 H11 A1JUJ 43 A1JUJ H12 H12 H 0 1 N N N N N N 173.701 177.341 134.304 -1.953 -0.234 -1.086 H12 A1JUJ 44 A1JUJ H13 H13 H 0 1 N N N N N N 174.951 176.170 135.879 -1.242 -0.196 1.882 H13 A1JUJ 45 A1JUJ H14 H14 H 0 1 N N N N N N 176.090 177.533 136.145 -1.593 -1.650 0.917 H14 A1JUJ 46 A1JUJ H15 H15 H 0 1 N N N N N N 181.586 181.397 130.177 -11.993 0.593 -0.623 H15 A1JUJ 47 A1JUJ H16 H16 H 0 1 N N N N N N 182.321 180.054 129.237 -10.844 1.612 -1.522 H16 A1JUJ 48 A1JUJ H17 H17 H 0 1 N N N N N N 181.451 181.376 128.386 -11.035 -0.105 -1.951 H17 A1JUJ 49 A1JUJ H18 H18 H 0 1 N N N N N N 179.045 178.571 128.385 -10.505 -1.120 1.309 H18 A1JUJ 50 A1JUJ H19 H19 H 0 1 N N N N N N 179.950 179.706 127.327 -9.479 0.227 1.859 H19 A1JUJ 51 A1JUJ H20 H20 H 0 1 N N N N N N 180.819 178.384 128.178 -11.200 0.507 1.502 H20 A1JUJ 52 A1JUJ H21 H21 H 0 1 N N N N N N 176.936 180.313 131.587 -6.273 -0.515 -1.181 H21 A1JUJ 53 A1JUJ H22 H22 H 0 1 N N N N N N 175.718 178.698 130.281 -6.277 1.922 -0.722 H22 A1JUJ 54 A1JUJ H23 H23 H 0 1 N N N N N N 176.485 177.348 131.185 -5.758 1.608 0.952 H23 A1JUJ 55 A1JUJ H24 H24 H 0 1 N N N N N N 174.751 179.553 132.431 -4.210 0.841 -1.565 H24 A1JUJ 56 A1JUJ H25 H25 H 0 1 N N N N N N 174.198 177.887 132.053 -3.824 2.201 -0.483 H25 A1JUJ 57 A1JUJ H26 H26 H 0 1 N N N N N N 176.094 177.020 133.518 -3.509 0.615 1.397 H26 A1JUJ 58 A1JUJ H27 H27 H 0 1 N N N N N N 172.754 180.803 144.604 8.033 -0.547 -0.831 H27 A1JUJ 59 A1JUJ H28 H28 H 0 1 N N N N N N 173.083 176.900 139.864 2.239 0.274 -1.060 H28 A1JUJ 60 A1JUJ H29 H29 H 0 1 N N N N N N 174.764 176.835 140.494 2.737 1.549 0.079 H29 A1JUJ 61 A1JUJ H30 H30 H 0 1 N N N N N N 174.162 175.786 138.177 0.856 0.969 1.572 H30 A1JUJ 62 A1JUJ H31 H31 H 0 1 N N N N N N 175.696 176.694 138.399 0.257 1.357 -0.058 H31 A1JUJ 63 A1JUJ H32 H32 H 0 1 N N N N N N 178.341 178.564 129.858 -7.938 -0.315 1.210 H32 A1JUJ 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JUJ C03 N02 SING N N 1 A1JUJ C01 N02 SING N N 2 A1JUJ N02 C04 SING N N 3 A1JUJ C04 N05 SING N N 4 A1JUJ C04 O32 DOUB N N 5 A1JUJ N05 C06 SING N N 6 A1JUJ C07 C06 SING N N 7 A1JUJ C07 C08 SING N N 8 A1JUJ C06 C11 SING N N 9 A1JUJ C08 C09 SING N N 10 A1JUJ C11 C10 SING N N 11 A1JUJ C09 C10 SING N N 12 A1JUJ C09 C12 SING N N 13 A1JUJ C12 C13 SING N N 14 A1JUJ C13 N14 SING N N 15 A1JUJ N14 C15 SING N N 16 A1JUJ N14 C31 SING N N 17 A1JUJ C15 C16 SING N N 18 A1JUJ C31 C30 SING N N 19 A1JUJ C16 N17 SING N N 20 A1JUJ C30 N17 SING N N 21 A1JUJ N17 C18 SING N N 22 A1JUJ C18 C19 DOUB Y N 23 A1JUJ C18 C29 SING Y N 24 A1JUJ C19 C20 SING Y N 25 A1JUJ F23 C21 SING N N 26 A1JUJ C29 C26 DOUB Y N 27 A1JUJ C20 C21 SING N N 28 A1JUJ C20 C25 DOUB Y N 29 A1JUJ C21 F22 SING N N 30 A1JUJ C21 F24 SING N N 31 A1JUJ C26 C25 SING Y N 32 A1JUJ C26 C27 SING N N 33 A1JUJ C27 N28 TRIP N N 34 A1JUJ C10 H1 SING N N 35 A1JUJ C10 H2 SING N N 36 A1JUJ C11 H3 SING N N 37 A1JUJ C11 H4 SING N N 38 A1JUJ C15 H5 SING N N 39 A1JUJ C15 H6 SING N N 40 A1JUJ C16 H7 SING N N 41 A1JUJ C16 H8 SING N N 42 A1JUJ C29 H9 SING N N 43 A1JUJ C19 H10 SING N N 44 A1JUJ C12 H11 SING N N 45 A1JUJ C12 H12 SING N N 46 A1JUJ C13 H13 SING N N 47 A1JUJ C13 H14 SING N N 48 A1JUJ C01 H15 SING N N 49 A1JUJ C01 H16 SING N N 50 A1JUJ C01 H17 SING N N 51 A1JUJ C03 H18 SING N N 52 A1JUJ C03 H19 SING N N 53 A1JUJ C03 H20 SING N N 54 A1JUJ C06 H21 SING N N 55 A1JUJ C07 H22 SING N N 56 A1JUJ C07 H23 SING N N 57 A1JUJ C08 H24 SING N N 58 A1JUJ C08 H25 SING N N 59 A1JUJ C09 H26 SING N N 60 A1JUJ C25 H27 SING N N 61 A1JUJ C30 H28 SING N N 62 A1JUJ C30 H29 SING N N 63 A1JUJ C31 H30 SING N N 64 A1JUJ C31 H31 SING N N 65 A1JUJ N05 H32 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JUJ InChI InChI 1.06 "InChI=1S/C23H32F3N5O/c1-29(2)22(32)28-20-5-3-17(4-6-20)7-8-30-9-11-31(12-10-30)21-14-18(16-27)13-19(15-21)23(24,25)26/h13-15,17,20H,3-12H2,1-2H3,(H,28,32)/t17-,20-" A1JUJ InChIKey InChI 1.06 PPQCJBGNDPIZOE-IRJFHVNHSA-N A1JUJ SMILES_CANONICAL CACTVS 3.385 "CN(C)C(=O)N[C@@H]1CC[C@H](CC1)CCN2CCN(CC2)c3cc(cc(c3)C(F)(F)F)C#N" A1JUJ SMILES CACTVS 3.385 "CN(C)C(=O)N[CH]1CC[CH](CC1)CCN2CCN(CC2)c3cc(cc(c3)C(F)(F)F)C#N" A1JUJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)NC1CCC(CC1)CCN2CCN(CC2)c3cc(cc(c3)C(F)(F)F)C#N" A1JUJ SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)NC1CCC(CC1)CCN2CCN(CC2)c3cc(cc(c3)C(F)(F)F)C#N" # _pdbx_chem_comp_identifier.comp_id A1JUJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[4-[2-[4-[3-cyano-5-(trifluoromethyl)phenyl]piperazin-1-yl]ethyl]cyclohexyl]-1,1-dimethyl-urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JUJ "Create component" 2025-11-13 PDBE A1JUJ "Initial release" 2026-09-09 RCSB #