data_A1JUW # _chem_comp.id A1JUW _chem_comp.name "1-(9-oxidanylidenethioxanthen-2-yl)pyrrolidine-2,5-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H11 N O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-21 _chem_comp.pdbx_modified_date 2026-03-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 309.339 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JUW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9TAV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JUW N1 N1 N 0 1 N N N N N N -19.474 9.802 -12.091 3.190 -0.095 -0.118 N1 A1JUW 1 A1JUW C4 C1 C 0 1 Y N N N N N -17.655 17.434 -10.684 -4.712 0.611 -0.562 C4 A1JUW 2 A1JUW C5 C2 C 0 1 Y N N N N N -16.444 17.830 -10.141 -5.526 -0.496 -0.578 C5 A1JUW 3 A1JUW C6 C3 C 0 1 Y N N N N N -15.404 16.912 -10.034 -5.052 -1.726 -0.142 C6 A1JUW 4 A1JUW C7 C4 C 0 1 Y N N N N N -15.594 15.602 -10.467 -3.768 -1.849 0.301 C7 A1JUW 5 A1JUW C8 C5 C 0 1 Y N N N N N -19.359 13.985 -11.880 -0.766 1.306 -0.089 C8 A1JUW 6 A1JUW C10 C6 C 0 1 Y N N N N N -18.265 11.844 -11.791 0.849 -0.456 0.327 C10 A1JUW 7 A1JUW C13 C7 C 0 1 Y N N N N N -19.457 11.159 -12.081 1.865 0.368 -0.108 C13 A1JUW 8 A1JUW C15 C8 C 0 1 N N N N N N -20.144 7.708 -11.522 5.442 -0.316 0.423 C15 A1JUW 9 A1JUW C17 C9 C 0 1 N N N N N N -18.456 8.949 -12.260 3.612 -1.064 -0.939 C17 A1JUW 10 A1JUW C14 C10 C 0 1 N N N N N N -20.489 9.037 -11.675 4.136 0.401 0.689 C14 A1JUW 11 A1JUW O3 O1 O 0 1 N N N N N N -21.592 9.459 -11.323 3.973 1.284 1.503 O3 A1JUW 12 A1JUW C16 C11 C 0 1 N N N N N N -18.745 7.605 -12.006 5.083 -1.319 -0.692 C16 A1JUW 13 A1JUW O2 O2 O 0 1 N N N N N N -17.352 9.302 -12.641 2.925 -1.646 -1.751 O2 A1JUW 14 A1JUW C9 C12 C 0 1 Y N N N N N -18.186 13.242 -11.701 -0.477 0.005 0.336 C9 A1JUW 15 A1JUW C1 C13 C 0 1 N N N N N N -16.942 13.844 -11.420 -1.537 -0.901 0.786 C1 A1JUW 16 A1JUW O1 O3 O 0 1 N N N N N N -15.915 13.156 -11.454 -1.269 -1.805 1.557 O1 A1JUW 17 A1JUW C2 C14 C 0 1 Y N N N N N -16.819 15.183 -11.006 -2.917 -0.733 0.320 C2 A1JUW 18 A1JUW C3 C15 C 0 1 Y N N N N N -17.849 16.122 -11.114 -3.390 0.511 -0.111 C3 A1JUW 19 A1JUW S1 S1 S 0 1 N N N N N N -19.398 15.744 -11.768 -2.396 1.956 -0.095 S1 A1JUW 20 A1JUW C11 C16 C 0 1 Y N N N N N -20.556 13.322 -12.133 0.283 2.125 -0.528 C11 A1JUW 21 A1JUW C12 C17 C 0 1 Y N N N N N -20.612 11.932 -12.223 1.575 1.663 -0.537 C12 A1JUW 22 A1JUW H1 H1 H 0 1 N N N N N N -18.458 18.150 -10.775 -5.093 1.562 -0.903 H1 A1JUW 23 A1JUW H2 H2 H 0 1 N N N N N N -16.308 18.846 -9.802 -6.543 -0.409 -0.933 H2 A1JUW 24 A1JUW H3 H3 H 0 1 N N N N N N -14.454 17.214 -9.617 -5.702 -2.588 -0.153 H3 A1JUW 25 A1JUW H4 H4 H 0 1 N N N N N N -14.782 14.895 -10.386 -3.405 -2.808 0.639 H4 A1JUW 26 A1JUW H5 H5 H 0 1 N N N N N N -17.367 11.267 -11.630 1.073 -1.459 0.660 H5 A1JUW 27 A1JUW H6 H6 H 0 1 N N N N N N -20.807 7.067 -12.122 6.201 0.385 0.076 H6 A1JUW 28 A1JUW H7 H7 H 0 1 N N N N N N -18.677 6.997 -12.920 5.664 -1.114 -1.591 H7 A1JUW 29 A1JUW H8 H8 H 0 1 N N N N N N -21.461 13.897 -12.262 0.072 3.130 -0.862 H8 A1JUW 30 A1JUW H9 H9 H 0 1 N N N N N N -21.560 11.447 -12.405 2.373 2.306 -0.879 H9 A1JUW 31 A1JUW H10 H10 H 0 1 N N N N N N -20.208 7.413 -10.464 5.783 -0.836 1.318 H10 A1JUW 32 A1JUW H11 H11 H 0 1 N N N N N N -18.080 7.186 -11.236 5.243 -2.344 -0.355 H11 A1JUW 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JUW O2 C17 DOUB N N 1 A1JUW C17 N1 SING N N 2 A1JUW C17 C16 SING N N 3 A1JUW C12 C11 DOUB Y N 4 A1JUW C12 C13 SING Y N 5 A1JUW C11 C8 SING Y N 6 A1JUW N1 C13 SING N N 7 A1JUW N1 C14 SING N N 8 A1JUW C13 C10 DOUB Y N 9 A1JUW C16 C15 SING N N 10 A1JUW C8 S1 SING N N 11 A1JUW C8 C9 DOUB Y N 12 A1JUW C10 C9 SING Y N 13 A1JUW S1 C3 SING N N 14 A1JUW C9 C1 SING N N 15 A1JUW C14 C15 SING N N 16 A1JUW C14 O3 DOUB N N 17 A1JUW O1 C1 DOUB N N 18 A1JUW C1 C2 SING N N 19 A1JUW C3 C2 DOUB Y N 20 A1JUW C3 C4 SING Y N 21 A1JUW C2 C7 SING Y N 22 A1JUW C4 C5 DOUB Y N 23 A1JUW C7 C6 DOUB Y N 24 A1JUW C5 C6 SING Y N 25 A1JUW C4 H1 SING N N 26 A1JUW C5 H2 SING N N 27 A1JUW C6 H3 SING N N 28 A1JUW C7 H4 SING N N 29 A1JUW C10 H5 SING N N 30 A1JUW C15 H6 SING N N 31 A1JUW C16 H7 SING N N 32 A1JUW C11 H8 SING N N 33 A1JUW C12 H9 SING N N 34 A1JUW C15 H10 SING N N 35 A1JUW C16 H11 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JUW InChI InChI 1.06 "InChI=1S/C17H11NO3S/c19-15-7-8-16(20)18(15)10-5-6-14-12(9-10)17(21)11-3-1-2-4-13(11)22-14/h1-6,9H,7-8H2" A1JUW InChIKey InChI 1.06 NNARTBFMPNOEGC-UHFFFAOYSA-N A1JUW SMILES_CANONICAL CACTVS 3.385 "O=C1CCC(=O)N1c2ccc3Sc4ccccc4C(=O)c3c2" A1JUW SMILES CACTVS 3.385 "O=C1CCC(=O)N1c2ccc3Sc4ccccc4C(=O)c3c2" A1JUW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=O)c3cc(ccc3S2)N4C(=O)CCC4=O" A1JUW SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=O)c3cc(ccc3S2)N4C(=O)CCC4=O" # _pdbx_chem_comp_identifier.comp_id A1JUW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-(9-oxidanylidenethioxanthen-2-yl)pyrrolidine-2,5-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JUW "Create component" 2025-11-21 PDBE A1JUW "Modify PCM" 2025-11-21 PDBE A1JUW "Initial release" 2026-03-25 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1JUW _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C15 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #