data_A1JVT # _chem_comp.id A1JVT _chem_comp.name "6,7-dimethoxy-4-[4-[5-(phenylmethyl)pyrimidin-2-yl]piperazin-1-yl]quinoline" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H27 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-27 _chem_comp.pdbx_modified_date 2026-07-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 441.525 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JVT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9TFG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JVT C10 C1 C 0 1 N N N N N N -2.033 -3.486 56.337 8.798 0.861 -0.265 C10 A1JVT 1 A1JVT C13 C2 C 0 1 Y N N N N N -8.877 -4.948 56.485 3.006 -2.763 -0.084 C13 A1JVT 2 A1JVT C17 C3 C 0 1 N N N N N N -11.696 -1.776 55.028 -0.537 -0.380 -0.988 C17 A1JVT 3 A1JVT C21 C4 C 0 1 Y N N N N N -12.473 0.359 56.166 -2.444 -0.135 0.366 C21 A1JVT 4 A1JVT C24 C5 C 0 1 Y N N N N N -14.530 2.126 56.797 -4.848 1.030 0.546 C24 A1JVT 5 A1JVT C26 C6 C 0 1 Y N N N N N -16.514 2.521 58.265 -7.246 0.775 0.056 C26 A1JVT 6 A1JVT C28 C7 C 0 1 Y N N N N N -18.694 1.932 59.172 -8.514 0.027 -1.832 C28 A1JVT 7 A1JVT C01 C8 C 0 1 N N N N N N -5.564 0.038 54.020 3.853 3.470 0.078 C01 A1JVT 8 A1JVT C03 C9 C 0 1 Y N N N N N -5.151 -2.008 55.255 5.186 1.505 -0.057 C03 A1JVT 9 A1JVT C04 C10 C 0 1 Y N N N N N -6.509 -2.221 55.364 4.023 0.791 -0.023 C04 A1JVT 10 A1JVT C05 C11 C 0 1 Y N N N N N -7.071 -3.442 55.862 4.067 -0.610 -0.073 C05 A1JVT 11 A1JVT C06 C12 C 0 1 Y N N N N N -6.154 -4.453 56.218 5.314 -1.273 -0.159 C06 A1JVT 12 A1JVT C07 C13 C 0 1 Y N N N N N -4.748 -4.232 56.106 6.494 -0.511 -0.193 C07 A1JVT 13 A1JVT C08 C14 C 0 1 Y N N N N N -4.249 -3.036 55.645 6.424 0.851 -0.143 C08 A1JVT 14 A1JVT C12 C15 C 0 1 Y N N N N N -7.869 -5.921 56.794 4.266 -3.338 -0.178 C12 A1JVT 15 A1JVT C14 C16 C 0 1 Y N N N N N -8.481 -3.723 55.997 2.883 -1.383 -0.030 C14 A1JVT 16 A1JVT C16 C17 C 0 1 N N N N N N -10.816 -3.000 55.447 0.795 -1.127 -1.089 C16 A1JVT 17 A1JVT C18 C18 C 0 1 N N N N N N -9.324 -1.506 56.624 0.972 -1.136 1.325 C18 A1JVT 18 A1JVT C19 C19 C 0 1 N N N N N N -10.013 -0.271 56.033 -0.360 -0.389 1.426 C19 A1JVT 19 A1JVT C23 C20 C 0 1 Y N N N N N -13.172 2.397 57.046 -4.048 1.227 -0.568 C23 A1JVT 20 A1JVT C25 C21 C 0 1 N N N N N N -15.652 3.062 57.151 -6.201 1.686 0.648 C25 A1JVT 21 A1JVT C27 C22 C 0 1 Y N N N N N -17.902 2.424 58.133 -7.556 0.862 -1.289 C27 A1JVT 22 A1JVT C29 C23 C 0 1 Y N N N N N -18.116 1.500 60.362 -9.163 -0.894 -1.031 C29 A1JVT 23 A1JVT C30 C24 C 0 1 Y N N N N N -16.733 1.571 60.505 -8.849 -0.984 0.312 C30 A1JVT 24 A1JVT C31 C25 C 0 1 Y N N N N N -15.946 2.068 59.465 -7.891 -0.149 0.856 C31 A1JVT 25 A1JVT C32 C26 C 0 1 Y N N N N N -14.737 0.864 56.213 -4.379 0.213 1.563 C32 A1JVT 26 A1JVT N11 N1 N 0 1 Y N N N N N -6.565 -5.696 56.685 5.358 -2.610 -0.213 N11 A1JVT 27 A1JVT N15 N2 N 0 1 N N N N N N -9.405 -2.674 55.689 1.637 -0.779 0.064 N15 A1JVT 28 A1JVT N20 N3 N 0 1 N N N N N N -11.454 -0.550 55.847 -1.202 -0.737 0.273 N20 A1JVT 29 A1JVT N22 N4 N 0 1 Y N N N N N -12.141 1.575 56.756 -2.865 0.637 -0.626 N22 A1JVT 30 A1JVT N33 N5 N 0 1 Y N N N N N -13.764 -0.017 55.896 -3.187 -0.347 1.442 N33 A1JVT 31 A1JVT O02 O1 O 0 1 N N N N N N -4.695 -0.796 54.780 5.144 2.863 -0.009 O02 A1JVT 32 A1JVT O09 O2 O 0 1 N N N N N N -2.924 -2.760 55.511 7.568 1.583 -0.177 O09 A1JVT 33 A1JVT H101 H1 H 0 0 N N N N N N -1.000 -3.169 56.130 9.631 1.563 -0.284 H101 A1JVT 34 A1JVT H102 H2 H 0 0 N N N N N N -2.272 -3.292 57.393 8.896 0.204 0.600 H102 A1JVT 35 A1JVT H103 H3 H 0 0 N N N N N N -2.135 -4.561 56.130 8.805 0.264 -1.177 H103 A1JVT 36 A1JVT H131 H4 H 0 0 N N N N N N -9.923 -5.172 56.632 2.125 -3.387 -0.058 H131 A1JVT 37 A1JVT H171 H5 H 0 0 N N N N N N -11.481 -1.538 53.976 -0.354 0.694 -1.012 H171 A1JVT 38 A1JVT H172 H6 H 0 0 N N N N N N -12.754 -2.058 55.131 -1.174 -0.659 -1.827 H172 A1JVT 39 A1JVT H281 H7 H 0 0 N N N N N N -19.766 1.886 59.051 -8.757 0.094 -2.882 H281 A1JVT 40 A1JVT H011 H8 H 0 0 N N N N N N -5.031 0.955 53.729 3.352 3.129 0.983 H011 A1JVT 41 A1JVT H012 H9 H 0 0 N N N N N N -5.890 -0.499 53.117 3.963 4.554 0.109 H012 A1JVT 42 A1JVT H013 H10 H 0 0 N N N N N N -6.443 0.301 54.627 3.261 3.189 -0.793 H013 A1JVT 43 A1JVT H041 H11 H 0 0 N N N N N N -7.180 -1.431 55.060 3.075 1.303 0.044 H041 A1JVT 44 A1JVT H071 H12 H 0 0 N N N N N N -4.064 -5.018 56.388 7.454 -1.002 -0.259 H071 A1JVT 45 A1JVT H121 H13 H 0 0 N N N N N N -8.190 -6.894 57.135 4.350 -4.413 -0.223 H121 A1JVT 46 A1JVT H161 H14 H 0 0 N N N N N N -11.235 -3.425 56.371 0.610 -2.201 -1.093 H161 A1JVT 47 A1JVT H162 H15 H 0 0 N N N N N N -10.864 -3.750 54.644 1.304 -0.841 -2.010 H162 A1JVT 48 A1JVT H181 H16 H 0 0 N N N N N N -9.815 -1.771 57.572 1.610 -0.858 2.164 H181 A1JVT 49 A1JVT H182 H17 H 0 0 N N N N N N -8.266 -1.270 56.812 0.790 -2.211 1.348 H182 A1JVT 50 A1JVT H191 H18 H 0 0 N N N N N N -9.890 0.580 56.719 -0.868 -0.675 2.346 H191 A1JVT 51 A1JVT H192 H19 H 0 0 N N N N N N -9.558 -0.028 55.061 -0.175 0.685 1.430 H192 A1JVT 52 A1JVT H231 H20 H 0 0 N N N N N N -12.934 3.343 57.509 -4.384 1.858 -1.378 H231 A1JVT 53 A1JVT H251 H21 H 0 0 N N N N N N -16.279 3.216 56.261 -6.436 1.875 1.695 H251 A1JVT 54 A1JVT H252 H22 H 0 0 N N N N N N -15.224 4.024 57.469 -6.190 2.629 0.102 H252 A1JVT 55 A1JVT H271 H23 H 0 0 N N N N N N -18.370 2.735 57.211 -7.049 1.581 -1.915 H271 A1JVT 56 A1JVT H291 H24 H 0 0 N N N N N N -18.731 1.116 61.162 -9.912 -1.546 -1.455 H291 A1JVT 57 A1JVT H301 H25 H 0 0 N N N N N N -16.268 1.241 61.422 -9.356 -1.704 0.938 H301 A1JVT 58 A1JVT H311 H26 H 0 0 N N N N N N -14.874 2.105 59.587 -7.645 -0.220 1.905 H311 A1JVT 59 A1JVT H321 H27 H 0 0 N N N N N N -15.756 0.576 56.001 -4.978 0.039 2.445 H321 A1JVT 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JVT O02 C01 SING N N 1 A1JVT C03 O02 SING N N 2 A1JVT C04 C03 DOUB Y N 3 A1JVT C05 C04 SING Y N 4 A1JVT C06 C05 DOUB Y N 5 A1JVT C08 C07 DOUB Y N 6 A1JVT O09 C08 SING N N 7 A1JVT C10 O09 SING N N 8 A1JVT C07 C06 SING Y N 9 A1JVT N11 C06 SING Y N 10 A1JVT C12 N11 DOUB Y N 11 A1JVT C13 C12 SING Y N 12 A1JVT C14 C13 DOUB Y N 13 A1JVT N15 C14 SING N N 14 A1JVT C17 C16 SING N N 15 A1JVT C16 N15 SING N N 16 A1JVT C18 N15 SING N N 17 A1JVT C19 C18 SING N N 18 A1JVT N20 C19 SING N N 19 A1JVT C21 N20 SING N N 20 A1JVT N22 C21 DOUB Y N 21 A1JVT C23 N22 SING Y N 22 A1JVT C24 C23 DOUB Y N 23 A1JVT C26 C25 SING N N 24 A1JVT C27 C26 DOUB Y N 25 A1JVT C28 C27 SING Y N 26 A1JVT C29 C28 DOUB Y N 27 A1JVT C30 C29 SING Y N 28 A1JVT C31 C30 DOUB Y N 29 A1JVT C25 C24 SING N N 30 A1JVT C32 C24 SING Y N 31 A1JVT N33 C32 DOUB Y N 32 A1JVT C03 C08 SING Y N 33 A1JVT C05 C14 SING Y N 34 A1JVT C17 N20 SING N N 35 A1JVT C21 N33 SING Y N 36 A1JVT C26 C31 SING Y N 37 A1JVT C10 H101 SING N N 38 A1JVT C10 H102 SING N N 39 A1JVT C10 H103 SING N N 40 A1JVT C13 H131 SING N N 41 A1JVT C17 H171 SING N N 42 A1JVT C17 H172 SING N N 43 A1JVT C28 H281 SING N N 44 A1JVT C01 H011 SING N N 45 A1JVT C01 H012 SING N N 46 A1JVT C01 H013 SING N N 47 A1JVT C04 H041 SING N N 48 A1JVT C07 H071 SING N N 49 A1JVT C12 H121 SING N N 50 A1JVT C16 H161 SING N N 51 A1JVT C16 H162 SING N N 52 A1JVT C18 H181 SING N N 53 A1JVT C18 H182 SING N N 54 A1JVT C19 H191 SING N N 55 A1JVT C19 H192 SING N N 56 A1JVT C23 H231 SING N N 57 A1JVT C25 H251 SING N N 58 A1JVT C25 H252 SING N N 59 A1JVT C27 H271 SING N N 60 A1JVT C29 H291 SING N N 61 A1JVT C30 H301 SING N N 62 A1JVT C31 H311 SING N N 63 A1JVT C32 H321 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JVT InChI InChI 1.06 "InChI=1S/C26H27N5O2/c1-32-24-15-21-22(16-25(24)33-2)27-9-8-23(21)30-10-12-31(13-11-30)26-28-17-20(18-29-26)14-19-6-4-3-5-7-19/h3-9,15-18H,10-14H2,1-2H3" A1JVT InChIKey InChI 1.06 YPUNTOXETHOQDC-UHFFFAOYSA-N A1JVT SMILES_CANONICAL CACTVS 3.385 "COc1cc2nccc(N3CCN(CC3)c4ncc(Cc5ccccc5)cn4)c2cc1OC" A1JVT SMILES CACTVS 3.385 "COc1cc2nccc(N3CCN(CC3)c4ncc(Cc5ccccc5)cn4)c2cc1OC" A1JVT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc2c(ccnc2cc1OC)N3CCN(CC3)c4ncc(cn4)Cc5ccccc5" A1JVT SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc2c(ccnc2cc1OC)N3CCN(CC3)c4ncc(cn4)Cc5ccccc5" # _pdbx_chem_comp_identifier.comp_id A1JVT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6,7-dimethoxy-4-[4-[5-(phenylmethyl)pyrimidin-2-yl]piperazin-1-yl]quinoline" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JVT "Create component" 2025-11-27 PDBE A1JVT "Initial release" 2026-07-15 RCSB #