data_A1JVY # _chem_comp.id A1JVY _chem_comp.name "4-[4-[5-[(1~{S})-1-azanyl-1-(4-fluorophenyl)ethyl]pyrimidin-2-yl]piperazin-1-yl]quinoline-3-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H24 F N7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-27 _chem_comp.pdbx_modified_date 2026-07-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 453.514 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JVY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9TFK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JVY C10 C1 C 0 1 Y N N N N N -12.290 -1.783 8.695 2.811 -0.942 1.326 C10 A1JVY 1 A1JVY C15 C2 C 0 1 Y N N N N N -12.434 1.535 10.185 5.618 0.041 0.085 C15 A1JVY 2 A1JVY C17 C3 C 0 1 Y N N N N N -13.498 1.597 12.392 5.668 2.371 0.634 C17 A1JVY 3 A1JVY C20 C4 C 0 1 Y N N N N N -12.535 2.925 10.139 6.551 0.254 -0.913 C20 A1JVY 4 A1JVY C22 C5 C 0 1 N N N N N N -10.437 0.130 9.565 5.508 -1.811 1.731 C22 A1JVY 5 A1JVY C24 C6 C 0 1 Y N N N N N -19.610 -6.041 8.219 -5.149 -1.250 -0.251 C24 A1JVY 6 A1JVY C28 C7 C 0 1 Y N N N N N -18.115 -7.926 7.614 -5.152 1.143 0.050 C28 A1JVY 7 A1JVY C01 C8 C 0 1 Y N N N N N -18.350 -6.475 7.768 -4.424 -0.066 -0.057 C01 A1JVY 8 A1JVY C03 C9 C 0 1 N N N N N N -17.512 -4.152 7.014 -2.596 -0.912 1.150 C03 A1JVY 9 A1JVY C04 C10 C 0 1 N N N N N N -16.257 -3.386 6.434 -1.071 -0.836 1.257 C04 A1JVY 10 A1JVY C06 C11 C 0 1 N N N N N N -14.858 -4.958 7.727 -0.923 -0.456 -1.129 C06 A1JVY 11 A1JVY C07 C12 C 0 1 N N N N N N -16.097 -5.630 8.354 -2.447 -0.532 -1.236 C07 A1JVY 12 A1JVY C08 C13 C 0 1 Y N N N N N -14.304 -2.514 7.788 0.910 -1.302 0.079 C08 A1JVY 13 A1JVY C11 C14 C 0 1 Y N N N N N -12.680 -0.445 8.616 3.582 -1.333 0.243 C11 A1JVY 14 A1JVY C12 C15 C 0 1 Y N N N N N -13.969 -0.243 8.082 2.941 -1.710 -0.926 C12 A1JVY 15 A1JVY C14 C16 C 0 1 N N S N N N -11.790 0.736 9.052 5.086 -1.347 0.335 C14 A1JVY 16 A1JVY C16 C17 C 0 1 Y N N N N N -12.930 0.897 11.334 5.177 1.099 0.858 C16 A1JVY 17 A1JVY C18 C18 C 0 1 Y N N N N N -13.591 2.989 12.311 6.602 2.585 -0.365 C18 A1JVY 18 A1JVY C19 C19 C 0 1 Y N N N N N -13.102 3.659 11.177 7.043 1.525 -1.139 C19 A1JVY 19 A1JVY C25 C20 C 0 1 Y N N N N N -20.581 -7.078 8.463 -6.550 -1.192 -0.335 C25 A1JVY 20 A1JVY C27 C21 C 0 1 Y N N N N N -19.147 -8.853 7.900 -6.563 1.107 -0.052 C27 A1JVY 21 A1JVY C29 C22 C 0 1 Y N N N N N -18.915 -10.278 7.752 -7.284 2.309 0.043 C29 A1JVY 22 A1JVY C30 C23 C 0 1 Y N N N N N -17.709 -10.776 7.323 -6.620 3.483 0.230 C30 A1JVY 23 A1JVY C31 C24 C 0 1 Y N N N N N -16.668 -9.862 7.039 -5.232 3.515 0.331 C31 A1JVY 24 A1JVY C32 C25 C 0 1 Y N N N N N -16.880 -8.512 7.178 -4.500 2.369 0.243 C32 A1JVY 25 A1JVY C33 C26 C 0 1 N N N N N N -20.042 -4.677 8.441 -4.469 -2.505 -0.367 C33 A1JVY 26 A1JVY F21 F1 F 0 1 N N N N N N -14.146 3.649 13.315 7.083 3.829 -0.586 F21 A1JVY 27 A1JVY N02 N1 N 0 1 N N N N N N -17.301 -5.529 7.511 -3.048 -0.079 0.027 N02 A1JVY 28 A1JVY N05 N2 N 0 1 N N N N N N -15.116 -3.585 7.356 -0.471 -1.289 -0.005 N05 A1JVY 29 A1JVY N09 N3 N 0 1 Y N N N N N -13.054 -2.817 8.296 1.493 -0.941 1.213 N09 A1JVY 30 A1JVY N13 N4 N 0 1 Y N N N N N -14.788 -1.228 7.675 1.619 -1.686 -0.973 N13 A1JVY 31 A1JVY N23 N5 N 0 1 N N N N N N -11.531 1.576 7.868 5.630 -2.268 -0.672 N23 A1JVY 32 A1JVY N26 N6 N 0 1 Y N N N N N -20.390 -8.377 8.326 -7.197 -0.059 -0.238 N26 A1JVY 33 A1JVY N34 N7 N 0 1 N N N N N N -20.399 -3.574 8.622 -3.929 -3.500 -0.459 N34 A1JVY 34 A1JVY H101 H1 H 0 0 N N N N N N -11.314 -2.002 9.102 3.280 -0.647 2.253 H101 A1JVY 35 A1JVY H171 H2 H 0 0 N N N N N N -13.862 1.073 13.263 5.323 3.197 1.237 H171 A1JVY 36 A1JVY H201 H3 H 0 0 N N N N N N -12.162 3.448 9.271 6.895 -0.574 -1.516 H201 A1JVY 37 A1JVY H221 H4 H 0 0 N N N N N N -9.770 0.943 9.887 5.123 -2.815 1.911 H221 A1JVY 38 A1JVY H222 H5 H 0 0 N N N N N N -10.634 -0.541 10.414 6.596 -1.822 1.797 H222 A1JVY 39 A1JVY H223 H6 H 0 0 N N N N N N -9.958 -0.437 8.753 5.105 -1.128 2.478 H223 A1JVY 40 A1JVY H031 H7 H 0 0 N N N N N N -18.266 -4.202 6.215 -2.898 -1.946 0.980 H031 A1JVY 41 A1JVY H032 H8 H 0 0 N N N N N N -17.904 -3.556 7.851 -3.044 -0.549 2.075 H032 A1JVY 42 A1JVY H041 H9 H 0 0 N N N N N N -16.005 -3.786 5.441 -0.771 0.193 1.454 H041 A1JVY 43 A1JVY H042 H10 H 0 0 N N N N N N -16.484 -2.313 6.351 -0.732 -1.476 2.072 H042 A1JVY 44 A1JVY H061 H11 H 0 0 N N N N N N -14.566 -5.520 6.828 -0.475 -0.819 -2.054 H061 A1JVY 45 A1JVY H062 H12 H 0 0 N N N N N N -14.035 -4.980 8.456 -0.621 0.577 -0.959 H062 A1JVY 46 A1JVY H071 H13 H 0 0 N N N N N N -16.305 -5.147 9.320 -2.787 0.108 -2.050 H071 A1JVY 47 A1JVY H072 H14 H 0 0 N N N N N N -15.873 -6.694 8.517 -2.747 -1.561 -1.433 H072 A1JVY 48 A1JVY H121 H15 H 0 0 N N N N N N -14.323 0.774 7.994 3.513 -2.020 -1.788 H121 A1JVY 49 A1JVY H161 H16 H 0 0 N N N N N N -12.868 -0.179 11.398 4.448 0.931 1.637 H161 A1JVY 50 A1JVY H191 H17 H 0 0 N N N N N N -13.166 4.735 11.111 7.771 1.691 -1.919 H191 A1JVY 51 A1JVY H251 H18 H 0 0 N N N N N N -21.560 -6.761 8.790 -7.107 -2.106 -0.485 H251 A1JVY 52 A1JVY H291 H19 H 0 0 N N N N N N -19.714 -10.967 7.986 -8.361 2.302 -0.034 H291 A1JVY 53 A1JVY H301 H20 H 0 0 N N N N N N -17.559 -11.839 7.205 -7.179 4.405 0.302 H301 A1JVY 54 A1JVY H311 H21 H 0 0 N N N N N N -15.705 -10.226 6.712 -4.729 4.459 0.480 H311 A1JVY 55 A1JVY H321 H22 H 0 0 N N N N N N -16.062 -7.847 6.943 -3.424 2.405 0.322 H321 A1JVY 56 A1JVY H1 H23 H 0 1 N N N N N N -10.954 2.350 8.128 5.340 -3.217 -0.488 H1 A1JVY 57 A1JVY H231 H24 H 0 0 N N N N N N -11.065 1.033 7.170 5.365 -1.983 -1.603 H231 A1JVY 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JVY C01 N02 SING N N 1 A1JVY C24 C01 DOUB Y N 2 A1JVY C01 C28 SING Y N 3 A1JVY N02 C03 SING N N 4 A1JVY N02 C07 SING N N 5 A1JVY C03 C04 SING N N 6 A1JVY C04 N05 SING N N 7 A1JVY N05 C06 SING N N 8 A1JVY N05 C08 SING N N 9 A1JVY C06 C07 SING N N 10 A1JVY N09 C08 DOUB Y N 11 A1JVY C08 N13 SING Y N 12 A1JVY C10 N09 SING Y N 13 A1JVY C11 C10 DOUB Y N 14 A1JVY C12 C11 SING Y N 15 A1JVY C11 C14 SING N N 16 A1JVY C12 N13 DOUB Y N 17 A1JVY C14 C15 SING N N 18 A1JVY C14 C22 SING N N 19 A1JVY C14 N23 SING N N 20 A1JVY C15 C16 DOUB Y N 21 A1JVY C15 C20 SING Y N 22 A1JVY C16 C17 SING Y N 23 A1JVY C17 C18 DOUB Y N 24 A1JVY C18 C19 SING Y N 25 A1JVY C18 F21 SING N N 26 A1JVY C19 C20 DOUB Y N 27 A1JVY C25 C24 SING Y N 28 A1JVY C24 C33 SING N N 29 A1JVY C25 N26 DOUB Y N 30 A1JVY C27 N26 SING Y N 31 A1JVY C28 C27 DOUB Y N 32 A1JVY C29 C27 SING Y N 33 A1JVY C28 C32 SING Y N 34 A1JVY C30 C29 DOUB Y N 35 A1JVY C31 C30 SING Y N 36 A1JVY C32 C31 DOUB Y N 37 A1JVY C33 N34 TRIP N N 38 A1JVY C10 H101 SING N N 39 A1JVY C17 H171 SING N N 40 A1JVY C20 H201 SING N N 41 A1JVY C22 H221 SING N N 42 A1JVY C22 H222 SING N N 43 A1JVY C22 H223 SING N N 44 A1JVY C03 H031 SING N N 45 A1JVY C03 H032 SING N N 46 A1JVY C04 H041 SING N N 47 A1JVY C04 H042 SING N N 48 A1JVY C06 H061 SING N N 49 A1JVY C06 H062 SING N N 50 A1JVY C07 H071 SING N N 51 A1JVY C07 H072 SING N N 52 A1JVY C12 H121 SING N N 53 A1JVY C16 H161 SING N N 54 A1JVY C19 H191 SING N N 55 A1JVY C25 H251 SING N N 56 A1JVY C29 H291 SING N N 57 A1JVY C30 H301 SING N N 58 A1JVY C31 H311 SING N N 59 A1JVY C32 H321 SING N N 60 A1JVY N23 H1 SING N N 61 A1JVY N23 H231 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JVY InChI InChI 1.06 "InChI=1S/C26H24FN7/c1-26(29,19-6-8-21(27)9-7-19)20-16-31-25(32-17-20)34-12-10-33(11-13-34)24-18(14-28)15-30-23-5-3-2-4-22(23)24/h2-9,15-17H,10-13,29H2,1H3/t26-/m0/s1" A1JVY InChIKey InChI 1.06 REFUXZBHNUVJEZ-SANMLTNESA-N A1JVY SMILES_CANONICAL CACTVS 3.385 "C[C@](N)(c1ccc(F)cc1)c2cnc(nc2)N3CCN(CC3)c4c(cnc5ccccc45)C#N" A1JVY SMILES CACTVS 3.385 "C[C](N)(c1ccc(F)cc1)c2cnc(nc2)N3CCN(CC3)c4c(cnc5ccccc45)C#N" A1JVY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@](c1ccc(cc1)F)(c2cnc(nc2)N3CCN(CC3)c4c5ccccc5ncc4C#N)N" A1JVY SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1ccc(cc1)F)(c2cnc(nc2)N3CCN(CC3)c4c5ccccc5ncc4C#N)N" # _pdbx_chem_comp_identifier.comp_id A1JVY _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[4-[5-[(1~{S})-1-azanyl-1-(4-fluorophenyl)ethyl]pyrimidin-2-yl]piperazin-1-yl]quinoline-3-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JVY "Create component" 2025-11-27 PDBE A1JVY "Initial release" 2026-07-15 RCSB #