data_A1JWU # _chem_comp.id A1JWU _chem_comp.name "Cefdinir, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H15 N5 O5 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2R)-2-[(1R)-1-[[(2Z)-2-(2-azanyl-1,3-thiazol-4-yl)-2-hydroxyimino-ethanoyl]amino]-2-oxidanylidene-ethyl]-5-ethenyl-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-12-16 _chem_comp.pdbx_modified_date 2026-10-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 397.429 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JWU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9TLD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JWU C10 C1 C 0 1 N N N N N N -4.373 -4.688 -18.995 -2.154 -1.745 -0.284 C10 A1JWU 1 A1JWU N12 N1 N 0 1 N N N N N N -3.460 -3.766 -19.475 -1.079 -0.952 -0.105 N12 A1JWU 2 A1JWU C13 C2 C 0 1 N N R N N N -2.034 -3.779 -19.053 0.257 -1.543 0.003 C13 A1JWU 3 A1JWU C22 C3 C 0 1 N N N N N N -0.300 -5.216 -22.937 3.816 1.044 -0.142 C22 A1JWU 4 A1JWU C26 C4 C 0 1 N N N N N N 1.306 -6.729 -24.322 5.238 2.993 0.083 C26 A1JWU 5 A1JWU C02 C5 C 0 1 Y N N N N N -8.045 -4.210 -22.393 -2.937 2.408 0.018 C02 A1JWU 6 A1JWU C04 C6 C 0 1 Y N N N N N -6.300 -4.458 -20.812 -3.687 0.310 -0.225 C04 A1JWU 7 A1JWU C05 C7 C 0 1 Y N N N N N -5.506 -4.298 -21.900 -4.890 0.903 -0.360 C05 A1JWU 8 A1JWU C07 C8 C 0 1 N N N N N N -5.853 -4.665 -19.392 -3.515 -1.157 -0.291 C07 A1JWU 9 A1JWU C14 C9 C 0 1 N N N N N N -1.665 -2.270 -18.961 0.508 -1.961 1.429 C14 A1JWU 10 A1JWU C16 C10 C 0 1 N N R N N N -1.000 -4.485 -20.024 1.306 -0.513 -0.419 C16 A1JWU 11 A1JWU C18 C11 C 0 1 N N N N N N -0.396 -4.012 -22.411 3.779 -0.281 -0.303 C18 A1JWU 12 A1JWU C19 C12 C 0 1 N N N N N N 0.154 -2.586 -23.197 5.067 -0.952 -0.517 C19 A1JWU 13 A1JWU C23 C13 C 0 1 N N N N N N -0.672 -6.396 -22.083 2.621 1.930 0.061 C23 A1JWU 14 A1JWU C25 C14 C 0 1 N N N N N N 0.343 -5.797 -24.229 5.130 1.684 -0.157 C25 A1JWU 15 A1JWU N01 N2 N 0 1 N N N N N N -9.302 -4.112 -22.987 -2.013 3.418 0.221 N01 A1JWU 16 A1JWU N03 N3 N 0 1 Y N N N N N -7.734 -4.403 -21.122 -2.665 1.141 -0.019 N03 A1JWU 17 A1JWU N08 N4 N 0 1 N N N N N N -6.801 -4.793 -18.484 -4.559 -1.933 -0.355 N08 A1JWU 18 A1JWU N17 N5 N 0 1 N N N N N N -0.474 -3.677 -21.021 2.653 -1.089 -0.290 N17 A1JWU 19 A1JWU O09 O1 O 0 1 N N N N N N -6.425 -4.962 -17.205 -4.402 -3.339 -0.291 O09 A1JWU 20 A1JWU O11 O2 O 0 1 N N N N N N -4.017 -5.564 -18.243 -2.008 -2.940 -0.444 O11 A1JWU 21 A1JWU O15 O3 O 0 1 N N N N N N -2.042 -1.431 -19.738 -0.342 -1.782 2.269 O15 A1JWU 22 A1JWU O20 O4 O 0 1 N N N N N N 1.329 -2.364 -22.974 5.795 -1.365 0.540 O20 A1JWU 23 A1JWU O21 O5 O 0 1 N N N N N N -0.675 -1.951 -23.818 5.476 -1.136 -1.648 O21 A1JWU 24 A1JWU S06 S1 S 0 1 Y N N N N N -6.501 -4.065 -23.357 -4.666 2.645 -0.221 S06 A1JWU 25 A1JWU S24 S2 S 0 1 N N N N N N -1.824 -5.988 -20.739 1.230 0.936 0.682 S24 A1JWU 26 A1JWU H1 H1 H 0 1 N N N N N N -3.768 -3.071 -20.124 -1.190 0.010 -0.048 H1 A1JWU 27 A1JWU H2 H2 H 0 1 N N N N N N -1.943 -4.231 -18.054 0.322 -2.416 -0.647 H2 A1JWU 28 A1JWU H4 H4 H 0 1 N N N N N N 1.724 -7.165 -23.427 6.209 3.466 0.071 H4 A1JWU 29 A1JWU H5 H5 H 0 1 N N N N N N 1.662 -7.042 -25.292 4.354 3.578 0.289 H5 A1JWU 30 A1JWU H6 H6 H 0 1 N N N N N N -4.426 -4.310 -21.884 -5.829 0.397 -0.525 H6 A1JWU 31 A1JWU H7 H7 H 0 1 N Y N N N N -1.029 -1.955 -18.147 1.447 -2.419 1.701 H7 A1JWU 32 A1JWU H8 H8 H 0 1 N N N N N N -0.187 -4.884 -19.400 1.131 -0.207 -1.450 H8 A1JWU 33 A1JWU H10 H10 H 0 1 N N N N N N -1.142 -7.155 -22.725 2.864 2.708 0.785 H10 A1JWU 34 A1JWU H11 H11 H 0 1 N N N N N N 0.247 -6.808 -21.640 2.344 2.389 -0.888 H11 A1JWU 35 A1JWU H12 H12 H 0 1 N N N N N N -0.030 -5.404 -25.163 6.014 1.099 -0.363 H12 A1JWU 36 A1JWU H13 H13 H 0 1 N N N N N N -9.196 -3.958 -23.969 -1.076 3.201 0.349 H13 A1JWU 37 A1JWU H14 H14 H 0 1 N N N N N N -9.809 -4.960 -22.835 -2.301 4.344 0.234 H14 A1JWU 38 A1JWU H15 H15 H 0 1 N N N N N N 0.468 -3.492 -20.741 2.755 -2.049 -0.194 H15 A1JWU 39 A1JWU H17 H17 H 0 1 N N N N N N -5.509 -5.213 -17.174 -5.232 -3.831 -0.346 H17 A1JWU 40 A1JWU H18 H18 H 0 1 N N N N N N 1.579 -1.542 -23.380 6.637 -1.803 0.349 H18 A1JWU 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JWU C26 C25 DOUB N N 1 A1JWU C25 C22 SING N N 2 A1JWU O21 C19 DOUB N N 3 A1JWU S06 C02 SING Y N 4 A1JWU S06 C05 SING Y N 5 A1JWU C19 O20 SING N N 6 A1JWU C19 C18 SING N N 7 A1JWU N01 C02 SING N N 8 A1JWU C22 C18 DOUB N N 9 A1JWU C22 C23 SING N N 10 A1JWU C18 N17 SING N N 11 A1JWU C02 N03 DOUB Y N 12 A1JWU C23 S24 SING N N 13 A1JWU C05 C04 DOUB Y N 14 A1JWU N03 C04 SING Y N 15 A1JWU N17 C16 SING N N 16 A1JWU C04 C07 SING N N 17 A1JWU S24 C16 SING N N 18 A1JWU C16 C13 SING N N 19 A1JWU O15 C14 DOUB N N 20 A1JWU N12 C13 SING N N 21 A1JWU N12 C10 SING N N 22 A1JWU C07 C10 SING N N 23 A1JWU C07 N08 DOUB N Z 24 A1JWU C13 C14 SING N N 25 A1JWU C10 O11 DOUB N N 26 A1JWU N08 O09 SING N N 27 A1JWU N12 H1 SING N N 28 A1JWU C13 H2 SING N N 29 A1JWU C26 H4 SING N N 30 A1JWU C26 H5 SING N N 31 A1JWU C05 H6 SING N N 32 A1JWU C14 H7 SING N N 33 A1JWU C16 H8 SING N N 34 A1JWU C23 H10 SING N N 35 A1JWU C23 H11 SING N N 36 A1JWU C25 H12 SING N N 37 A1JWU N01 H13 SING N N 38 A1JWU N01 H14 SING N N 39 A1JWU N17 H15 SING N N 40 A1JWU O09 H17 SING N N 41 A1JWU O20 H18 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JWU InChI InChI 1.06 "InChI=1S/C14H15N5O5S2/c1-2-6-4-25-12(18-9(6)13(22)23)7(3-20)16-11(21)10(19-24)8-5-26-14(15)17-8/h2-3,5,7,12,18,24H,1,4H2,(H2,15,17)(H,16,21)(H,22,23)/b19-10-/t7-,12-/m1/s1" A1JWU InChIKey InChI 1.06 RPHYSNGUBBQJSP-YVCCLBOHSA-N A1JWU SMILES_CANONICAL CACTVS 3.385 "Nc1scc(n1)C(=N/O)/C(=O)N[C@H](C=O)[C@@H]2NC(=C(CS2)C=C)C(O)=O" A1JWU SMILES CACTVS 3.385 "Nc1scc(n1)C(=NO)C(=O)N[CH](C=O)[CH]2NC(=C(CS2)C=C)C(O)=O" A1JWU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C=CC1=C(N[C@H](SC1)[C@@H](C=O)NC(=O)/C(=N\O)/c2csc(n2)N)C(=O)O" A1JWU SMILES "OpenEye OEToolkits" 2.0.7 "C=CC1=C(NC(SC1)C(C=O)NC(=O)C(=NO)c2csc(n2)N)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1JWU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[(1~{R})-1-[[(2~{Z})-2-(2-azanyl-1,3-thiazol-4-yl)-2-hydroxyimino-ethanoyl]amino]-2-oxidanylidene-ethyl]-5-ethenyl-3,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JWU _pdbx_chem_comp_synonyms.name "(2R)-2-[(1R)-1-[[(2Z)-2-(2-azanyl-1,3-thiazol-4-yl)-2-hydroxyimino-ethanoyl]amino]-2-oxidanylidene-ethyl]-5-ethenyl-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JWU "Create component" 2025-12-16 PDBE A1JWU "Initial release" 2026-10-21 RCSB # _pdbx_chem_comp_pcm.pcm_id 111 _pdbx_chem_comp_pcm.comp_id A1JWU _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #