data_A1JWV # _chem_comp.id A1JWV _chem_comp.name "~{N}-[3-[1-[[4-[5-[(3,5-dimethyl-1~{H}-pyrazol-4-yl)methyl]-3-phenyl-pyridin-2-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]prop-2-enamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H39 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-12-17 _chem_comp.pdbx_modified_date 2026-09-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 637.773 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JWV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9TMT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JWV C10 C1 C 0 1 Y N N N N N -12.264 19.456 -16.078 -1.193 0.545 -2.367 C10 A1JWV 1 A1JWV C13 C2 C 0 1 Y N N N N N -11.765 21.989 -18.982 -4.099 0.292 0.004 C13 A1JWV 2 A1JWV C15 C3 C 0 1 Y N N N N N -11.945 21.765 -21.316 -5.719 1.805 0.651 C15 A1JWV 3 A1JWV C17 C4 C 0 1 N N N N N N -12.066 23.759 -22.915 -7.810 1.142 1.865 C17 A1JWV 4 A1JWV C20 C5 C 0 1 N N N N N N -13.540 26.548 -22.340 -8.795 3.500 0.060 C20 A1JWV 5 A1JWV C24 C6 C 0 1 N N N N N N -14.093 21.919 -24.631 -9.532 -1.420 1.149 C24 A1JWV 6 A1JWV C26 C7 C 0 1 Y N N N N N -11.767 23.405 -19.082 -4.833 -0.775 0.544 C26 A1JWV 7 A1JWV C28 C8 C 0 1 Y N N N N N -12.473 24.176 -16.738 -4.273 -2.961 1.604 C28 A1JWV 8 A1JWV C02 C9 C 0 1 N N N N N N -11.250 12.837 -14.536 5.212 2.976 0.094 C02 A1JWV 9 A1JWV C04 C10 C 0 1 N N N N N N -9.903 15.023 -13.806 4.516 0.680 -0.621 C04 A1JWV 10 A1JWV C05 C11 C 0 1 N N N N N N -9.886 15.688 -15.100 3.191 0.688 0.145 C05 A1JWV 11 A1JWV C06 C12 C 0 1 N N N N N N -9.972 17.233 -15.028 2.216 -0.286 -0.523 C06 A1JWV 12 A1JWV C08 C13 C 0 1 N N N N N N -10.876 18.981 -13.929 0.963 -0.711 -2.550 C08 A1JWV 13 A1JWV C09 C14 C 0 1 Y N N N N N -11.161 19.757 -15.268 -0.364 -0.452 -1.884 C09 A1JWV 14 A1JWV C11 C15 C 0 1 Y N N N N N -12.486 20.163 -17.277 -2.407 0.791 -1.758 C11 A1JWV 15 A1JWV C12 C16 C 0 1 Y N N N N N -11.610 21.194 -17.654 -2.797 0.033 -0.655 C12 A1JWV 16 A1JWV C16 C17 C 0 1 Y N N N N N -11.969 23.154 -21.487 -6.495 0.805 1.211 C16 A1JWV 17 A1JWV C18 C18 C 0 1 Y N N N N N -13.491 24.142 -23.362 -8.913 1.074 0.840 C18 A1JWV 18 A1JWV C19 C19 C 0 1 Y N N N N N -14.119 25.351 -23.125 -9.338 2.094 0.060 C19 A1JWV 19 A1JWV C23 C20 C 0 1 Y N N N N N -14.362 23.348 -24.119 -9.673 -0.056 0.523 C23 A1JWV 20 A1JWV C25 C21 C 0 1 Y N N N N N -11.868 23.985 -20.357 -6.057 -0.507 1.160 C25 A1JWV 21 A1JWV C27 C22 C 0 1 Y N N N N N -11.663 24.355 -17.860 -4.318 -2.163 0.462 C27 A1JWV 22 A1JWV C29 C23 C 0 1 Y N N N N N -12.360 25.044 -15.652 -3.787 -4.251 1.522 C29 A1JWV 23 A1JWV C30 C24 C 0 1 Y N N N N N -11.449 26.101 -15.685 -3.346 -4.751 0.310 C30 A1JWV 24 A1JWV C31 C25 C 0 1 Y N N N N N -10.643 26.288 -16.810 -3.389 -3.964 -0.826 C31 A1JWV 25 A1JWV C32 C26 C 0 1 Y N N N N N -10.754 25.417 -17.895 -3.877 -2.675 -0.757 C32 A1JWV 26 A1JWV C33 C27 C 0 1 Y N N N N N -10.497 21.472 -16.851 -1.956 -0.970 -0.173 C33 A1JWV 27 A1JWV C34 C28 C 0 1 Y N N N N N -10.281 20.770 -15.661 -0.747 -1.211 -0.793 C34 A1JWV 28 A1JWV C35 C29 C 0 1 N N N N N N -10.876 17.085 -12.782 3.250 0.073 -2.685 C35 A1JWV 29 A1JWV C36 C30 C 0 1 N N N N N N -10.901 15.546 -12.890 4.255 1.057 -2.082 C36 A1JWV 30 A1JWV C37 C31 C 0 1 Y N N N N N -9.126 12.540 -13.572 6.682 1.367 0.524 C37 A1JWV 31 A1JWV C38 C32 C 0 1 Y N N N N N -7.853 12.698 -12.982 7.408 0.196 0.672 C38 A1JWV 32 A1JWV C39 C33 C 0 1 Y N N N N N -7.074 11.568 -12.688 8.658 0.231 1.273 C39 A1JWV 33 A1JWV C41 C34 C 0 1 N N N N N N -4.507 11.118 -12.391 9.302 -1.926 0.499 C41 A1JWV 34 A1JWV C42 C35 C 0 1 N N N N N N -4.413 10.017 -13.460 9.981 -3.212 0.715 C42 A1JWV 35 A1JWV C43 C36 C 0 1 N N N N N N -4.595 8.819 -12.919 9.891 -4.174 -0.199 C43 A1JWV 36 A1JWV C45 C37 C 0 1 Y N N N N N -7.580 10.268 -12.974 9.182 1.437 1.724 C45 A1JWV 37 A1JWV C46 C38 C 0 1 Y N N N N N -8.852 10.113 -13.566 8.462 2.605 1.577 C46 A1JWV 38 A1JWV C47 C39 C 0 1 Y N N N N N -9.631 11.258 -13.867 7.214 2.578 0.975 C47 A1JWV 39 A1JWV N03 N1 N 0 1 N N N N N N -10.118 13.550 -13.982 5.433 1.653 -0.022 N03 A1JWV 40 A1JWV N07 N2 N 0 1 N N N N N N -10.924 17.756 -14.067 1.998 0.117 -1.918 N07 A1JWV 41 A1JWV N14 N3 N 0 1 Y N N N N N -11.842 21.255 -20.090 -4.566 1.531 0.075 N14 A1JWV 42 A1JWV N21 N4 N 0 1 Y N N N N N -15.308 25.286 -23.688 -10.337 1.628 -0.719 N21 A1JWV 43 A1JWV N22 N5 N 0 1 Y N N N N N -15.487 24.063 -24.306 -10.529 0.275 -0.410 N22 A1JWV 44 A1JWV N40 N6 N 0 1 N N N N N N -5.760 11.803 -12.060 9.394 -0.951 1.425 N40 A1JWV 45 A1JWV N48 N7 N 0 1 N N N N N N -10.969 11.423 -14.473 6.269 3.562 0.688 N48 A1JWV 46 A1JWV O01 O1 O 0 1 N N N N N N -12.246 13.311 -14.969 4.211 3.555 -0.285 O01 A1JWV 47 A1JWV O44 O2 O 0 1 N N N N N N -3.530 11.424 -11.793 8.656 -1.742 -0.516 O44 A1JWV 48 A1JWV H101 H1 H 0 0 N N N N N N -12.950 18.676 -15.781 -0.888 1.134 -3.219 H101 A1JWV 49 A1JWV H151 H2 H 0 0 N N N N N N -12.010 21.111 -22.173 -6.064 2.828 0.687 H151 A1JWV 50 A1JWV H171 H3 H 0 0 N N N N N N -11.672 23.019 -23.627 -8.012 0.428 2.664 H171 A1JWV 51 A1JWV H172 H4 H 0 0 N N N N N N -11.443 24.665 -22.945 -7.762 2.148 2.281 H172 A1JWV 52 A1JWV H201 H5 H 0 0 N N N N N N -13.004 27.215 -23.031 -7.979 3.574 -0.658 H201 A1JWV 53 A1JWV H202 H6 H 0 0 N N N N N N -14.360 27.101 -21.858 -9.587 4.196 -0.216 H202 A1JWV 54 A1JWV H203 H7 H 0 0 N N N N N N -12.844 26.180 -21.572 -8.426 3.746 1.056 H203 A1JWV 55 A1JWV H241 H8 H 0 0 N N N N N N -14.971 21.556 -25.185 -10.183 -1.490 2.020 H241 A1JWV 56 A1JWV H242 H9 H 0 0 N N N N N N -13.218 21.927 -25.297 -9.813 -2.184 0.423 H242 A1JWV 57 A1JWV H243 H10 H 0 0 N N N N N N -13.898 21.254 -23.777 -8.497 -1.574 1.455 H243 A1JWV 58 A1JWV H281 H11 H 0 0 N N N N N N -13.187 23.366 -16.710 -4.613 -2.570 2.552 H281 A1JWV 59 A1JWV H041 H12 H 0 0 N N N N N N -8.914 15.158 -13.343 4.960 -0.314 -0.575 H041 A1JWV 60 A1JWV H051 H13 H 0 0 N N N N N N -8.950 15.419 -15.612 3.365 0.379 1.176 H051 A1JWV 61 A1JWV H052 H14 H 0 0 N N N N N N -10.743 15.323 -15.685 2.768 1.692 0.132 H052 A1JWV 62 A1JWV H061 H15 H 0 0 N N N N N N -8.976 17.617 -14.763 2.634 -1.292 -0.496 H061 A1JWV 63 A1JWV H062 H16 H 0 0 N N N N N N -10.255 17.604 -16.024 1.266 -0.272 0.012 H062 A1JWV 64 A1JWV H081 H17 H 0 0 N N N N N N -9.873 19.255 -13.570 1.224 -1.764 -2.441 H081 A1JWV 65 A1JWV H082 H18 H 0 0 N N N N N N -11.627 19.280 -13.183 0.894 -0.461 -3.608 H082 A1JWV 66 A1JWV H111 H19 H 0 0 N N N N N N -13.328 19.912 -17.905 -3.053 1.569 -2.135 H111 A1JWV 67 A1JWV H251 H20 H 0 0 N N N N N N -11.868 25.059 -20.469 -6.648 -1.305 1.586 H251 A1JWV 68 A1JWV H291 H21 H 0 0 N N N N N N -12.981 24.897 -14.781 -3.752 -4.870 2.406 H291 A1JWV 69 A1JWV H301 H22 H 0 0 N N N N N N -11.368 26.772 -14.843 -2.967 -5.761 0.252 H301 A1JWV 70 A1JWV H311 H23 H 0 0 N N N N N N -9.936 27.104 -16.840 -3.043 -4.360 -1.769 H311 A1JWV 71 A1JWV H321 H24 H 0 0 N N N N N N -10.134 25.564 -18.767 -3.909 -2.061 -1.645 H321 A1JWV 72 A1JWV H331 H25 H 0 0 N N N N N N -9.798 22.237 -17.154 -2.253 -1.561 0.682 H331 A1JWV 73 A1JWV H341 H26 H 0 0 N N N N N N -9.430 21.012 -15.042 -0.096 -1.987 -0.421 H341 A1JWV 74 A1JWV H351 H27 H 0 0 N N N N N N -9.950 17.383 -12.268 3.050 0.346 -3.721 H351 A1JWV 75 A1JWV H352 H28 H 0 0 N N N N N N -11.745 17.407 -12.189 3.662 -0.936 -2.649 H352 A1JWV 76 A1JWV H361 H29 H 0 0 N N N N N N -10.717 15.122 -11.892 3.849 2.067 -2.131 H361 A1JWV 77 A1JWV H362 H30 H 0 0 N N N N N N -11.896 15.236 -13.242 5.189 1.012 -2.643 H362 A1JWV 78 A1JWV H381 H31 H 0 0 N N N N N N -7.479 13.686 -12.757 7.001 -0.742 0.322 H381 A1JWV 79 A1JWV H421 H32 H 0 0 N N N N N N -4.225 10.194 -14.509 10.554 -3.375 1.616 H421 A1JWV 80 A1JWV H431 H33 H 0 0 N N N N N N -4.559 7.935 -13.539 9.318 -4.011 -1.100 H431 A1JWV 81 A1JWV H432 H34 H 0 0 N N N N N N -4.779 8.728 -11.859 10.390 -5.119 -0.040 H432 A1JWV 82 A1JWV H451 H35 H 0 0 N N N N N N -6.988 9.397 -12.737 10.156 1.459 2.191 H451 A1JWV 83 A1JWV H461 H36 H 0 0 N N N N N N -9.230 9.126 -13.789 8.871 3.540 1.929 H461 A1JWV 84 A1JWV H211 H38 H 0 0 N N N N N N -15.987 26.020 -23.671 -10.832 2.138 -1.379 H211 A1JWV 85 A1JWV H401 H39 H 0 0 N N N N N N -5.720 12.496 -11.340 9.969 -1.068 2.197 H401 A1JWV 86 A1JWV H481 H40 H 0 0 N N N N N N -11.571 10.687 -14.783 6.357 4.509 0.883 H481 A1JWV 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JWV C02 O01 DOUB N N 1 A1JWV N03 C02 SING N N 2 A1JWV C05 C04 SING N N 3 A1JWV C06 C05 SING N N 4 A1JWV N07 C06 SING N N 5 A1JWV C09 C08 SING N N 6 A1JWV C10 C09 DOUB Y N 7 A1JWV C11 C10 SING Y N 8 A1JWV C12 C11 DOUB Y N 9 A1JWV N14 C13 DOUB Y N 10 A1JWV C15 N14 SING Y N 11 A1JWV C16 C15 DOUB Y N 12 A1JWV C18 C17 SING N N 13 A1JWV C19 C18 DOUB Y N 14 A1JWV C20 C19 SING N N 15 A1JWV N21 C19 SING Y N 16 A1JWV N22 N21 SING Y N 17 A1JWV C23 N22 DOUB Y N 18 A1JWV C24 C23 SING N N 19 A1JWV C17 C16 SING N N 20 A1JWV C25 C16 SING Y N 21 A1JWV C26 C25 DOUB Y N 22 A1JWV C27 C26 SING N N 23 A1JWV C28 C27 DOUB Y N 24 A1JWV C29 C28 SING Y N 25 A1JWV C30 C29 DOUB Y N 26 A1JWV C31 C30 SING Y N 27 A1JWV C32 C31 DOUB Y N 28 A1JWV C13 C12 SING N N 29 A1JWV C33 C12 SING Y N 30 A1JWV C34 C33 DOUB Y N 31 A1JWV C08 N07 SING N N 32 A1JWV C35 N07 SING N N 33 A1JWV C36 C35 SING N N 34 A1JWV C04 N03 SING N N 35 A1JWV C37 N03 SING N N 36 A1JWV C38 C37 DOUB Y N 37 A1JWV C39 C38 SING Y N 38 A1JWV C41 N40 SING N N 39 A1JWV C43 C42 DOUB N N 40 A1JWV C42 C41 SING N N 41 A1JWV O44 C41 DOUB N N 42 A1JWV N40 C39 SING N N 43 A1JWV C45 C39 DOUB Y N 44 A1JWV C46 C45 SING Y N 45 A1JWV C47 C46 DOUB Y N 46 A1JWV N48 C47 SING N N 47 A1JWV C02 N48 SING N N 48 A1JWV C04 C36 SING N N 49 A1JWV C09 C34 SING Y N 50 A1JWV C13 C26 SING Y N 51 A1JWV C18 C23 SING Y N 52 A1JWV C27 C32 SING Y N 53 A1JWV C37 C47 SING Y N 54 A1JWV C10 H101 SING N N 55 A1JWV C15 H151 SING N N 56 A1JWV C17 H171 SING N N 57 A1JWV C17 H172 SING N N 58 A1JWV C20 H201 SING N N 59 A1JWV C20 H202 SING N N 60 A1JWV C20 H203 SING N N 61 A1JWV C24 H241 SING N N 62 A1JWV C24 H242 SING N N 63 A1JWV C24 H243 SING N N 64 A1JWV C28 H281 SING N N 65 A1JWV C04 H041 SING N N 66 A1JWV C05 H051 SING N N 67 A1JWV C05 H052 SING N N 68 A1JWV C06 H061 SING N N 69 A1JWV C06 H062 SING N N 70 A1JWV C08 H081 SING N N 71 A1JWV C08 H082 SING N N 72 A1JWV C11 H111 SING N N 73 A1JWV C25 H251 SING N N 74 A1JWV C29 H291 SING N N 75 A1JWV C30 H301 SING N N 76 A1JWV C31 H311 SING N N 77 A1JWV C32 H321 SING N N 78 A1JWV C33 H331 SING N N 79 A1JWV C34 H341 SING N N 80 A1JWV C35 H351 SING N N 81 A1JWV C35 H352 SING N N 82 A1JWV C36 H361 SING N N 83 A1JWV C36 H362 SING N N 84 A1JWV C38 H381 SING N N 85 A1JWV C42 H421 SING N N 86 A1JWV C43 H431 SING N N 87 A1JWV C43 H432 SING N N 88 A1JWV C45 H451 SING N N 89 A1JWV C46 H461 SING N N 90 A1JWV N21 H211 SING N N 91 A1JWV N40 H401 SING N N 92 A1JWV N48 H481 SING N N 93 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JWV InChI InChI 1.06 "InChI=1S/C39H39N7O2/c1-4-37(47)41-31-14-15-35-36(22-31)46(39(48)42-35)32-16-18-45(19-17-32)24-27-10-12-30(13-11-27)38-34(29-8-6-5-7-9-29)21-28(23-40-38)20-33-25(2)43-44-26(33)3/h4-15,21-23,32H,1,16-20,24H2,2-3H3,(H,41,47)(H,42,48)(H,43,44)" A1JWV InChIKey InChI 1.06 ZQNOFMHIBSFTFY-UHFFFAOYSA-N A1JWV SMILES_CANONICAL CACTVS 3.385 "Cc1[nH]nc(C)c1Cc2cnc(c3ccc(CN4CCC(CC4)N5C(=O)Nc6ccc(NC(=O)C=C)cc56)cc3)c(c2)c7ccccc7" A1JWV SMILES CACTVS 3.385 "Cc1[nH]nc(C)c1Cc2cnc(c3ccc(CN4CCC(CC4)N5C(=O)Nc6ccc(NC(=O)C=C)cc56)cc3)c(c2)c7ccccc7" A1JWV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(n[nH]1)C)Cc2cc(c(nc2)c3ccc(cc3)CN4CCC(CC4)N5c6cc(ccc6NC5=O)NC(=O)C=C)c7ccccc7" A1JWV SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(n[nH]1)C)Cc2cc(c(nc2)c3ccc(cc3)CN4CCC(CC4)N5c6cc(ccc6NC5=O)NC(=O)C=C)c7ccccc7" # _pdbx_chem_comp_identifier.comp_id A1JWV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[3-[1-[[4-[5-[(3,5-dimethyl-1~{H}-pyrazol-4-yl)methyl]-3-phenyl-pyridin-2-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]prop-2-enamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JWV "Create component" 2025-12-17 PDBE A1JWV "Initial release" 2026-09-16 RCSB #