data_A1JWX # _chem_comp.id A1JWX _chem_comp.name "~{N}-[3-[1-[[4-[5-[(3-ethyl-1-methyl-pyrazol-4-yl)methyl]-3-phenyl-pyridin-2-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H43 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-12-17 _chem_comp.pdbx_modified_date 2026-09-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 653.815 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JWX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9TMW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JWX C10 C1 C 0 1 N N N N N N -9.993 14.975 -13.755 4.321 -0.032 -1.014 C10 A1JWX 1 A1JWX C15 C2 C 0 1 N N N N N N -11.042 15.493 -12.864 2.924 -0.179 -0.404 C15 A1JWX 2 A1JWX C20 C3 C 0 1 N N N N N N -3.360 10.952 -11.592 10.297 1.473 2.209 C20 A1JWX 3 A1JWX C21 C4 C 0 1 N N N N N N -2.144 10.514 -12.402 10.322 2.906 1.674 C21 A1JWX 4 A1JWX C22 C5 C 0 1 N N N N N N -10.909 18.921 -13.768 1.273 2.793 -2.023 C22 A1JWX 5 A1JWX C24 C6 C 0 1 Y N N N N N -10.139 20.742 -15.493 -0.549 2.635 -0.316 C24 A1JWX 6 A1JWX C26 C7 C 0 1 Y N N N N N -11.574 21.241 -17.628 -2.763 1.925 -0.913 C26 A1JWX 7 A1JWX C28 C8 C 0 1 Y N N N N N -12.375 19.410 -15.928 -1.049 2.054 -2.589 C28 A1JWX 8 A1JWX C01 C9 C 0 1 Y N N N N N -7.914 12.582 -12.922 7.064 -0.834 0.435 C01 A1JWX 9 A1JWX C02 C10 C 0 1 Y N N N N N -9.294 12.433 -13.581 6.203 -1.602 -0.332 C02 A1JWX 10 A1JWX C03 C11 C 0 1 Y N N N N N -9.848 11.103 -13.922 6.492 -2.948 -0.567 C03 A1JWX 11 A1JWX C04 C12 C 0 1 Y N N N N N -9.043 9.817 -13.623 7.639 -3.515 -0.032 C04 A1JWX 12 A1JWX C05 C13 C 0 1 Y N N N N N -7.666 9.939 -12.968 8.494 -2.747 0.732 C05 A1JWX 13 A1JWX C06 C14 C 0 1 Y N N N N N -7.102 11.325 -12.626 8.213 -1.406 0.964 C06 A1JWX 14 A1JWX C08 C15 C 0 1 N N N N N N -11.419 12.760 -14.564 4.584 -2.453 -1.594 C08 A1JWX 15 A1JWX C11 C16 C 0 1 N N N N N N -9.868 15.680 -15.015 4.189 0.450 -2.461 C11 A1JWX 16 A1JWX C12 C17 C 0 1 N N N N N N -9.965 17.215 -14.914 3.420 1.773 -2.485 C12 A1JWX 17 A1JWX C14 C18 C 0 1 N N N N N N -10.946 17.005 -12.699 2.192 1.162 -0.488 C14 A1JWX 18 A1JWX C18 C19 C 0 1 N N N N N N -4.651 10.681 -12.366 9.281 0.667 1.440 C18 A1JWX 19 A1JWX C23 C20 C 0 1 Y N N N N N -11.153 19.692 -15.063 -0.149 2.485 -1.632 C23 A1JWX 20 A1JWX C25 C21 C 0 1 Y N N N N N -10.344 21.514 -16.782 -1.850 2.355 0.049 C25 A1JWX 21 A1JWX C27 C22 C 0 1 Y N N N N N -12.583 20.180 -17.224 -2.356 1.781 -2.239 C27 A1JWX 22 A1JWX C29 C23 C 0 1 Y N N N N N -11.738 21.991 -18.929 -4.165 1.633 -0.530 C29 A1JWX 23 A1JWX C31 C24 C 0 1 Y N N N N N -12.009 21.765 -21.470 -6.409 1.667 -1.071 C31 A1JWX 24 A1JWX C32 C25 C 0 1 Y N N N N N -12.001 23.278 -21.576 -6.759 1.107 0.145 C32 A1JWX 25 A1JWX C33 C26 C 0 1 Y N N N N N -11.847 24.135 -20.369 -5.770 0.802 1.065 C33 A1JWX 26 A1JWX C34 C27 C 0 1 Y N N N N N -11.712 23.508 -19.036 -4.442 1.069 0.726 C34 A1JWX 27 A1JWX C35 C28 C 0 1 Y N N N N N -11.566 24.396 -17.812 -3.345 0.762 1.674 C35 A1JWX 28 A1JWX C36 C29 C 0 1 Y N N N N N -12.473 24.173 -16.609 -3.421 1.196 2.996 C36 A1JWX 29 A1JWX C37 C30 C 0 1 Y N N N N N -12.334 25.063 -15.384 -2.396 0.907 3.874 C37 A1JWX 30 A1JWX C38 C31 C 0 1 Y N N N N N -11.292 26.180 -15.368 -1.295 0.188 3.444 C38 A1JWX 31 A1JWX C39 C32 C 0 1 Y N N N N N -10.391 26.401 -16.578 -1.214 -0.245 2.133 C39 A1JWX 32 A1JWX C40 C33 C 0 1 Y N N N N N -10.527 25.507 -17.806 -2.236 0.033 1.247 C40 A1JWX 33 A1JWX C41 C34 C 0 1 N N N N N N -12.120 23.928 -22.942 -8.206 0.837 0.468 C41 A1JWX 34 A1JWX C42 C35 C 0 1 Y N N N N N -13.454 23.594 -23.594 -8.572 -0.552 0.012 C42 A1JWX 35 A1JWX C43 C36 C 0 1 Y N N N N N -14.598 24.319 -23.449 -8.384 -1.733 0.738 C43 A1JWX 36 A1JWX C46 C37 C 0 1 Y N N N N N -13.693 22.545 -24.433 -9.146 -0.876 -1.169 C46 A1JWX 37 A1JWX C47 C38 C 0 1 N N N N N N -15.654 21.685 -25.682 -9.896 -2.993 -2.288 C47 A1JWX 38 A1JWX C48 C39 C 0 1 N N N N N N -14.762 25.573 -22.585 -7.779 -1.837 2.114 C48 A1JWX 39 A1JWX C49 C40 C 0 1 N N N N N N -14.123 26.791 -23.249 -8.884 -1.721 3.166 C49 A1JWX 40 A1JWX N07 N1 N 0 1 N N N N N N -10.251 13.454 -13.976 5.006 -1.327 -0.988 N07 A1JWX 41 A1JWX N09 N2 N 0 1 N N N N N N -11.159 11.308 -14.531 5.459 -3.449 -1.360 N09 A1JWX 42 A1JWX N13 N3 N 0 1 N N N N N N -10.954 17.721 -13.953 2.091 1.579 -1.892 N13 A1JWX 43 A1JWX N17 N4 N 0 1 N N N N N N -5.804 11.474 -11.992 9.085 -0.632 1.740 N17 A1JWX 44 A1JWX N30 N5 N 0 1 Y N N N N N -11.879 21.149 -20.138 -5.150 1.911 -1.372 N30 A1JWX 45 A1JWX N44 N6 N 0 1 Y N N N N N -15.539 23.725 -24.181 -8.824 -2.731 0.015 N44 A1JWX 46 A1JWX N45 N7 N 0 1 Y N N N N N -14.972 22.616 -24.799 -9.310 -2.215 -1.194 N45 A1JWX 47 A1JWX O16 O1 O 0 1 N N N N N N -12.395 13.259 -14.995 3.567 -2.554 -2.254 O16 A1JWX 48 A1JWX O19 O2 O 0 1 N N N N N N -4.711 9.857 -13.224 8.640 1.189 0.552 O19 A1JWX 49 A1JWX H101 H1 H 0 0 N N N N N N -9.033 15.058 -13.224 4.894 0.695 -0.439 H101 A1JWX 50 A1JWX H151 H2 H 0 0 N N N N N N -12.026 15.242 -13.288 2.364 -0.935 -0.956 H151 A1JWX 51 A1JWX H152 H3 H 0 0 N N N N N N -10.937 15.019 -11.877 3.013 -0.481 0.640 H152 A1JWX 52 A1JWX H201 H4 H 0 0 N N N N N N -3.285 12.029 -11.381 11.283 1.023 2.090 H201 A1JWX 53 A1JWX H202 H5 H 0 0 N N N N N N -3.383 10.394 -10.645 10.028 1.484 3.265 H202 A1JWX 54 A1JWX H211 H6 H 0 0 N N N N N N -1.228 10.717 -11.828 11.057 3.489 2.230 H211 A1JWX 55 A1JWX H212 H7 H 0 0 N N N N N N -2.213 9.437 -12.613 10.591 2.895 0.618 H212 A1JWX 56 A1JWX H213 H8 H 0 0 N N N N N N -2.114 11.072 -13.350 9.336 3.356 1.793 H213 A1JWX 57 A1JWX H221 H9 H 0 0 N N N N N N -11.680 19.200 -13.035 1.299 3.138 -3.057 H221 A1JWX 58 A1JWX H222 H10 H 0 0 N N N N N N -9.916 19.186 -13.375 1.670 3.570 -1.370 H222 A1JWX 59 A1JWX H241 H11 H 0 0 N N N N N N -9.272 20.938 -14.879 0.159 2.969 0.428 H241 A1JWX 60 A1JWX H281 H12 H 0 0 N N N N N N -13.093 18.664 -15.622 -0.731 1.939 -3.615 H281 A1JWX 61 A1JWX H011 H13 H 0 0 N N N N N N -7.526 13.559 -12.673 6.844 0.207 0.619 H011 A1JWX 62 A1JWX H041 H14 H 0 0 N N N N N N -9.447 8.847 -13.873 7.863 -4.556 -0.213 H041 A1JWX 63 A1JWX H051 H15 H 0 0 N N N N N N -7.092 9.052 -12.747 9.387 -3.189 1.149 H051 A1JWX 64 A1JWX H111 H16 H 0 0 N N N N N N -8.891 15.428 -15.452 5.181 0.598 -2.888 H111 A1JWX 65 A1JWX H112 H17 H 0 0 N N N N N N -10.669 15.330 -15.683 3.649 -0.296 -3.045 H112 A1JWX 66 A1JWX H121 H18 H 0 0 N N N N N N -8.977 17.599 -14.619 3.967 2.522 -1.913 H121 A1JWX 67 A1JWX H122 H19 H 0 0 N N N N N N -10.228 17.605 -15.909 3.312 2.111 -3.516 H122 A1JWX 68 A1JWX H141 H20 H 0 0 N N N N N N -10.010 17.239 -12.170 1.192 1.056 -0.067 H141 A1JWX 69 A1JWX H142 H21 H 0 0 N N N N N N -11.802 17.345 -12.098 2.745 1.913 0.075 H142 A1JWX 70 A1JWX H251 H22 H 0 0 N N N N N N -9.621 22.252 -17.095 -2.160 2.469 1.077 H251 A1JWX 71 A1JWX H271 H23 H 0 0 N N N N N N -13.439 19.974 -17.850 -3.061 1.455 -2.989 H271 A1JWX 72 A1JWX H311 H24 H 0 0 N N N N N N -12.108 21.151 -22.353 -7.182 1.908 -1.786 H311 A1JWX 73 A1JWX H331 H25 H 0 0 N N N N N N -11.834 25.211 -20.466 -6.019 0.365 2.021 H331 A1JWX 74 A1JWX H361 H26 H 0 0 N N N N N N -13.212 23.386 -16.626 -4.280 1.757 3.333 H361 A1JWX 75 A1JWX H371 H27 H 0 0 N N N N N N -12.971 24.906 -14.526 -2.454 1.242 4.899 H371 A1JWX 76 A1JWX H381 H28 H 0 0 N N N N N N -11.193 26.814 -14.499 -0.495 -0.036 4.135 H381 A1JWX 77 A1JWX H391 H29 H 0 0 N N N N N N -9.655 27.192 -16.565 -0.352 -0.805 1.802 H391 A1JWX 78 A1JWX H401 H30 H 0 0 N N N N N N -9.891 25.661 -18.665 -2.173 -0.309 0.225 H401 A1JWX 79 A1JWX H411 H31 H 0 0 N N N N N N -12.039 25.019 -22.829 -8.359 0.918 1.545 H411 A1JWX 80 A1JWX H412 H32 H 0 0 N N N N N N -11.305 23.564 -23.585 -8.835 1.565 -0.044 H412 A1JWX 81 A1JWX H461 H33 H 0 0 N N N N N N -12.979 21.797 -24.743 -9.424 -0.186 -1.953 H461 A1JWX 82 A1JWX H471 H34 H 0 0 N N N N N N -16.705 21.989 -25.795 -9.110 -3.292 -2.983 H471 A1JWX 83 A1JWX H472 H35 H 0 0 N N N N N N -15.164 21.688 -26.667 -10.381 -3.881 -1.884 H472 A1JWX 84 A1JWX H473 H36 H 0 0 N N N N N N -15.609 20.673 -25.253 -10.632 -2.383 -2.813 H473 A1JWX 85 A1JWX H481 H37 H 0 0 N N N N N N -15.834 25.768 -22.435 -7.278 -2.799 2.218 H481 A1JWX 86 A1JWX H482 H38 H 0 0 N N N N N N -14.281 25.402 -21.611 -7.056 -1.034 2.256 H482 A1JWX 87 A1JWX H491 H39 H 0 0 N N N N N N -14.257 27.673 -22.605 -9.385 -0.759 3.062 H491 A1JWX 88 A1JWX H492 H40 H 0 0 N N N N N N -13.049 26.606 -23.398 -9.606 -2.525 3.025 H492 A1JWX 89 A1JWX H493 H41 H 0 0 N N N N N N -14.602 26.971 -24.223 -8.446 -1.797 4.162 H493 A1JWX 90 A1JWX H091 H42 H 0 0 N N N N N N -11.771 10.592 -14.866 5.384 -4.359 -1.686 H091 A1JWX 91 A1JWX H171 H44 H 0 0 N N N N N N -5.702 12.154 -11.266 9.548 -1.031 2.493 H171 A1JWX 92 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JWX C01 C02 DOUB Y N 1 A1JWX C06 C01 SING Y N 2 A1JWX C03 C02 SING Y N 3 A1JWX N07 C02 SING N N 4 A1JWX C03 C04 DOUB Y N 5 A1JWX N09 C03 SING N N 6 A1JWX C04 C05 SING Y N 7 A1JWX C05 C06 DOUB Y N 8 A1JWX C06 N17 SING N N 9 A1JWX N07 C08 SING N N 10 A1JWX N07 C10 SING N N 11 A1JWX C08 N09 SING N N 12 A1JWX C08 O16 DOUB N N 13 A1JWX C11 C10 SING N N 14 A1JWX C10 C15 SING N N 15 A1JWX C12 C11 SING N N 16 A1JWX N13 C12 SING N N 17 A1JWX N13 C14 SING N N 18 A1JWX N13 C22 SING N N 19 A1JWX C15 C14 SING N N 20 A1JWX N17 C18 SING N N 21 A1JWX C18 O19 DOUB N N 22 A1JWX C18 C20 SING N N 23 A1JWX C20 C21 SING N N 24 A1JWX C22 C23 SING N N 25 A1JWX C23 C24 DOUB Y N 26 A1JWX C23 C28 SING Y N 27 A1JWX C24 C25 SING Y N 28 A1JWX C25 C26 DOUB Y N 29 A1JWX C26 C27 SING Y N 30 A1JWX C26 C29 SING N N 31 A1JWX C27 C28 DOUB Y N 32 A1JWX C29 N30 DOUB Y N 33 A1JWX C34 C29 SING Y N 34 A1JWX N30 C31 SING Y N 35 A1JWX C32 C31 DOUB Y N 36 A1JWX C32 C33 SING Y N 37 A1JWX C32 C41 SING N N 38 A1JWX C33 C34 DOUB Y N 39 A1JWX C34 C35 SING N N 40 A1JWX C35 C36 DOUB Y N 41 A1JWX C35 C40 SING Y N 42 A1JWX C36 C37 SING Y N 43 A1JWX C37 C38 DOUB Y N 44 A1JWX C38 C39 SING Y N 45 A1JWX C39 C40 DOUB Y N 46 A1JWX C41 C42 SING N N 47 A1JWX C43 C42 SING Y N 48 A1JWX C42 C46 DOUB Y N 49 A1JWX C43 N44 DOUB Y N 50 A1JWX C43 C48 SING N N 51 A1JWX N45 N44 SING Y N 52 A1JWX C46 N45 SING Y N 53 A1JWX N45 C47 SING N N 54 A1JWX C48 C49 SING N N 55 A1JWX C10 H101 SING N N 56 A1JWX C15 H151 SING N N 57 A1JWX C15 H152 SING N N 58 A1JWX C20 H201 SING N N 59 A1JWX C20 H202 SING N N 60 A1JWX C21 H211 SING N N 61 A1JWX C21 H212 SING N N 62 A1JWX C21 H213 SING N N 63 A1JWX C22 H221 SING N N 64 A1JWX C22 H222 SING N N 65 A1JWX C24 H241 SING N N 66 A1JWX C28 H281 SING N N 67 A1JWX C01 H011 SING N N 68 A1JWX C04 H041 SING N N 69 A1JWX C05 H051 SING N N 70 A1JWX C11 H111 SING N N 71 A1JWX C11 H112 SING N N 72 A1JWX C12 H121 SING N N 73 A1JWX C12 H122 SING N N 74 A1JWX C14 H141 SING N N 75 A1JWX C14 H142 SING N N 76 A1JWX C25 H251 SING N N 77 A1JWX C27 H271 SING N N 78 A1JWX C31 H311 SING N N 79 A1JWX C33 H331 SING N N 80 A1JWX C36 H361 SING N N 81 A1JWX C37 H371 SING N N 82 A1JWX C38 H381 SING N N 83 A1JWX C39 H391 SING N N 84 A1JWX C40 H401 SING N N 85 A1JWX C41 H411 SING N N 86 A1JWX C41 H412 SING N N 87 A1JWX C46 H461 SING N N 88 A1JWX C47 H471 SING N N 89 A1JWX C47 H472 SING N N 90 A1JWX C47 H473 SING N N 91 A1JWX C48 H481 SING N N 92 A1JWX C48 H482 SING N N 93 A1JWX C49 H491 SING N N 94 A1JWX C49 H492 SING N N 95 A1JWX C49 H493 SING N N 96 A1JWX N09 H091 SING N N 97 A1JWX N17 H171 SING N N 98 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JWX InChI InChI 1.06 "InChI=1S/C40H43N7O2/c1-4-35-31(26-45(3)44-35)21-28-22-34(29-9-7-6-8-10-29)39(41-24-28)30-13-11-27(12-14-30)25-46-19-17-33(18-20-46)47-37-23-32(42-38(48)5-2)15-16-36(37)43-40(47)49/h6-16,22-24,26,33H,4-5,17-21,25H2,1-3H3,(H,42,48)(H,43,49)" A1JWX InChIKey InChI 1.06 KSUOJTMEWGPAKM-UHFFFAOYSA-N A1JWX SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1ccc2NC(=O)N(C3CCN(CC3)Cc4ccc(cc4)c5ncc(Cc6cn(C)nc6CC)cc5c7ccccc7)c2c1" A1JWX SMILES CACTVS 3.385 "CCC(=O)Nc1ccc2NC(=O)N(C3CCN(CC3)Cc4ccc(cc4)c5ncc(Cc6cn(C)nc6CC)cc5c7ccccc7)c2c1" A1JWX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c(cn(n1)C)Cc2cc(c(nc2)c3ccc(cc3)CN4CCC(CC4)N5c6cc(ccc6NC5=O)NC(=O)CC)c7ccccc7" A1JWX SMILES "OpenEye OEToolkits" 2.0.7 "CCc1c(cn(n1)C)Cc2cc(c(nc2)c3ccc(cc3)CN4CCC(CC4)N5c6cc(ccc6NC5=O)NC(=O)CC)c7ccccc7" # _pdbx_chem_comp_identifier.comp_id A1JWX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[3-[1-[[4-[5-[(3-ethyl-1-methyl-pyrazol-4-yl)methyl]-3-phenyl-pyridin-2-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JWX "Create component" 2025-12-17 PDBE A1JWX "Modify PCM" 2025-12-17 PDBE A1JWX "Initial release" 2026-09-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1JWX _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C21 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #