data_A1JZ9 # _chem_comp.id A1JZ9 _chem_comp.name "p-Methoxyphenyl 3-O-benzyl-beta-D-galactopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C20 H24 O7" _chem_comp.mon_nstd_parent_comp_id GAL _chem_comp.pdbx_synonyms "(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-(4-methoxyphenoxy)-4-phenylmethoxy-oxane-3,5-diol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-02-20 _chem_comp.pdbx_modified_date 2026-09-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.400 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JZ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 28RY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JZ9 C10 C1 C 0 1 Y N N N N N 5.878 -5.973 1.096 6.694 1.796 0.662 C10 A1JZ9 1 A1JZ9 C17 C2 C 0 1 Y N N N N N -5.231 -8.499 1.735 -3.806 2.108 1.006 C17 A1JZ9 2 A1JZ9 C21 C3 C 0 1 N N N N N N -7.723 -5.438 3.211 -7.502 0.054 -1.212 C21 A1JZ9 3 A1JZ9 C22 C4 C 0 1 Y N N N N N -5.247 -7.689 4.398 -4.852 0.187 -0.696 C22 A1JZ9 4 A1JZ9 C6 C5 C 0 1 N N N N N N -2.113 -5.450 -0.025 -0.902 -3.457 0.405 C6 A1JZ9 5 A1JZ9 O4 O1 O 0 1 N N N N N N 0.107 -7.152 -0.645 1.293 -2.011 1.526 O4 A1JZ9 6 A1JZ9 C4 C6 C 0 1 N N S N N N -0.176 -6.832 0.739 1.060 -1.935 0.118 C4 A1JZ9 7 A1JZ9 C3 C7 C 0 1 N N S N N N 0.273 -7.978 1.583 1.507 -0.564 -0.401 C3 A1JZ9 8 A1JZ9 O3 O2 O 0 1 N N N N N N 1.697 -8.303 1.314 2.883 -0.357 -0.079 O3 A1JZ9 9 A1JZ9 C05 C8 C 0 1 N N N N N N 2.588 -7.664 2.253 3.581 0.470 -1.012 C05 A1JZ9 10 A1JZ9 C06 C9 C 0 1 Y N N N N N 4.083 -7.485 1.794 5.015 0.621 -0.576 C06 A1JZ9 11 A1JZ9 C07 C10 C 0 1 Y N N N N N 4.957 -8.581 1.667 5.969 -0.279 -1.015 C07 A1JZ9 12 A1JZ9 C08 C11 C 0 1 Y N N N N N 6.287 -8.360 1.253 7.282 -0.149 -0.605 C08 A1JZ9 13 A1JZ9 C09 C12 C 0 1 Y N N N N N 6.758 -7.064 0.978 7.646 0.892 0.229 C09 A1JZ9 14 A1JZ9 C11 C13 C 0 1 Y N N N N N 4.558 -6.193 1.521 5.378 1.658 0.262 C11 A1JZ9 15 A1JZ9 C2 C14 C 0 1 N N R N N N -0.676 -9.124 1.430 0.654 0.523 0.261 C2 A1JZ9 16 A1JZ9 O2 O3 O 0 1 N N N N N N -0.350 -10.133 2.405 1.014 1.800 -0.270 O2 A1JZ9 17 A1JZ9 C1 C15 C 0 1 N N S N N N -2.082 -8.635 1.738 -0.824 0.247 -0.027 C1 A1JZ9 18 A1JZ9 O1 O4 O 0 1 N N N N N N -3.054 -9.599 1.913 -1.628 1.225 0.634 O1 A1JZ9 19 A1JZ9 C16 C16 C 0 1 Y N N N N N -4.154 -8.864 2.536 -2.967 1.187 0.397 C16 A1JZ9 20 A1JZ9 C18 C17 C 0 1 Y N N N N N -6.317 -7.749 2.224 -5.166 2.068 0.765 C18 A1JZ9 21 A1JZ9 C19 C18 C 0 1 Y N N N N N -6.325 -7.342 3.555 -5.691 1.108 -0.087 C19 A1JZ9 22 A1JZ9 O20 O5 O 0 1 N N N N N N -7.430 -6.579 4.003 -7.030 1.069 -0.324 O20 A1JZ9 23 A1JZ9 C23 C19 C 0 1 Y N N N N N -4.159 -8.437 3.889 -3.493 0.226 -0.455 C23 A1JZ9 24 A1JZ9 O5 O6 O 0 1 N N N N N N -2.501 -7.608 0.697 -1.166 -1.055 0.454 O5 A1JZ9 25 A1JZ9 C5 C20 C 0 1 N N R N N N -1.654 -6.460 0.942 -0.434 -2.116 -0.164 C5 A1JZ9 26 A1JZ9 O6 O7 O 0 1 N N N N N N -3.492 -5.163 0.093 -2.266 -3.679 0.041 O6 A1JZ9 27 A1JZ9 H7 H1 H 0 1 N N N N N N 6.215 -4.974 0.862 6.978 2.607 1.316 H7 A1JZ9 28 A1JZ9 H8 H2 H 0 1 N N N N N N -5.234 -8.803 0.699 -3.397 2.852 1.673 H8 A1JZ9 29 A1JZ9 H9 H3 H 0 1 N N N N N N -8.591 -4.911 3.633 -8.584 0.135 -1.314 H9 A1JZ9 30 A1JZ9 H10 H4 H 0 1 N N N N N N -6.854 -4.764 3.203 -7.035 0.179 -2.189 H10 A1JZ9 31 A1JZ9 H11 H5 H 0 1 N N N N N N -7.951 -5.754 2.182 -7.247 -0.927 -0.811 H11 A1JZ9 32 A1JZ9 H6 H6 H 0 1 N N N N N N -5.253 -7.383 5.434 -5.262 -0.561 -1.359 H6 A1JZ9 33 A1JZ9 H61 H7 H 0 1 N N N N N N -1.918 -5.823 -1.041 -0.283 -4.258 0.001 H61 A1JZ9 34 A1JZ9 H62 H8 H 0 1 N N N N N N -1.546 -4.522 0.141 -0.813 -3.442 1.491 H62 A1JZ9 35 A1JZ9 HO4 H9 H 0 1 N N N N N N 1.025 -7.377 -0.737 1.028 -2.852 1.923 HO4 A1JZ9 36 A1JZ9 H4 H10 H 0 1 N N N N N N 0.423 -5.953 1.020 1.623 -2.718 -0.388 H4 A1JZ9 37 A1JZ9 H3 H11 H 0 1 N N N N N N 0.210 -7.648 2.631 1.375 -0.523 -1.482 H3 A1JZ9 38 A1JZ9 H12 H12 H 0 1 N N N N N N 2.183 -6.664 2.470 3.547 0.012 -2.000 H12 A1JZ9 39 A1JZ9 H13 H13 H 0 1 N N N N N N 2.591 -8.266 3.173 3.108 1.452 -1.051 H13 A1JZ9 40 A1JZ9 H14 H14 H 0 1 N N N N N N 4.613 -9.581 1.884 5.685 -1.090 -1.670 H14 A1JZ9 41 A1JZ9 H15 H15 H 0 1 N N N N N N 6.956 -9.201 1.145 8.027 -0.852 -0.947 H15 A1JZ9 42 A1JZ9 H16 H16 H 0 1 N N N N N N 7.784 -6.908 0.679 8.675 1.000 0.541 H16 A1JZ9 43 A1JZ9 H17 H17 H 0 1 N N N N N N 3.894 -5.350 1.640 4.634 2.362 0.604 H17 A1JZ9 44 A1JZ9 H2 H18 H 0 1 N N N N N N -0.631 -9.527 0.408 0.824 0.514 1.337 H2 A1JZ9 45 A1JZ9 HO2 H19 H 0 1 N N N N N N -0.948 -10.866 2.315 0.512 2.537 0.105 HO2 A1JZ9 46 A1JZ9 H1 H20 H 0 1 N N N N N N -2.001 -8.080 2.684 -1.001 0.296 -1.101 H1 A1JZ9 47 A1JZ9 H21 H21 H 0 1 N N N N N N -7.138 -7.491 1.571 -5.819 2.785 1.239 H21 A1JZ9 48 A1JZ9 H22 H22 H 0 1 N N N N N N -3.328 -8.684 4.534 -2.839 -0.491 -0.929 H22 A1JZ9 49 A1JZ9 H5 H23 H 0 1 N N N N N N -1.796 -6.091 1.969 -0.606 -2.098 -1.240 H5 A1JZ9 50 A1JZ9 HO6 H24 H 0 1 N N N N N N -3.736 -4.508 -0.551 -2.629 -4.513 0.369 HO6 A1JZ9 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JZ9 O4 C4 SING N N 1 A1JZ9 C6 O6 SING N N 2 A1JZ9 C6 C5 SING N N 3 A1JZ9 O5 C5 SING N N 4 A1JZ9 O5 C1 SING N N 5 A1JZ9 C4 C5 SING N N 6 A1JZ9 C4 C3 SING N N 7 A1JZ9 C09 C10 DOUB Y N 8 A1JZ9 C09 C08 SING Y N 9 A1JZ9 C10 C11 SING Y N 10 A1JZ9 C08 C07 DOUB Y N 11 A1JZ9 O3 C3 SING N N 12 A1JZ9 O3 C05 SING N N 13 A1JZ9 C2 C3 SING N N 14 A1JZ9 C2 C1 SING N N 15 A1JZ9 C2 O2 SING N N 16 A1JZ9 C11 C06 DOUB Y N 17 A1JZ9 C07 C06 SING Y N 18 A1JZ9 C17 C18 DOUB Y N 19 A1JZ9 C17 C16 SING Y N 20 A1JZ9 C1 O1 SING N N 21 A1JZ9 C06 C05 SING N N 22 A1JZ9 O1 C16 SING N N 23 A1JZ9 C18 C19 SING Y N 24 A1JZ9 C16 C23 DOUB Y N 25 A1JZ9 C21 O20 SING N N 26 A1JZ9 C19 O20 SING N N 27 A1JZ9 C19 C22 DOUB Y N 28 A1JZ9 C23 C22 SING Y N 29 A1JZ9 C10 H7 SING N N 30 A1JZ9 C17 H8 SING N N 31 A1JZ9 C21 H9 SING N N 32 A1JZ9 C21 H10 SING N N 33 A1JZ9 C21 H11 SING N N 34 A1JZ9 C22 H6 SING N N 35 A1JZ9 C6 H61 SING N N 36 A1JZ9 C6 H62 SING N N 37 A1JZ9 O4 HO4 SING N N 38 A1JZ9 C4 H4 SING N N 39 A1JZ9 C3 H3 SING N N 40 A1JZ9 C05 H12 SING N N 41 A1JZ9 C05 H13 SING N N 42 A1JZ9 C07 H14 SING N N 43 A1JZ9 C08 H15 SING N N 44 A1JZ9 C09 H16 SING N N 45 A1JZ9 C11 H17 SING N N 46 A1JZ9 C2 H2 SING N N 47 A1JZ9 O2 HO2 SING N N 48 A1JZ9 C1 H1 SING N N 49 A1JZ9 C18 H21 SING N N 50 A1JZ9 C23 H22 SING N N 51 A1JZ9 C5 H5 SING N N 52 A1JZ9 O6 HO6 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JZ9 InChI InChI 1.06 "InChI=1S/C20H24O7/c1-24-14-7-9-15(10-8-14)26-20-18(23)19(17(22)16(11-21)27-20)25-12-13-5-3-2-4-6-13/h2-10,16-23H,11-12H2,1H3/t16-,17+,18-,19+,20-/m1/s1" A1JZ9 InChIKey InChI 1.06 CZPFTCBIXZWFIZ-UJMXGEILSA-N A1JZ9 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(O[C@@H]2O[C@H](CO)[C@H](O)[C@H](OCc3ccccc3)[C@H]2O)cc1" A1JZ9 SMILES CACTVS 3.385 "COc1ccc(O[CH]2O[CH](CO)[CH](O)[CH](OCc3ccccc3)[CH]2O)cc1" A1JZ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)OCc3ccccc3)O" A1JZ9 SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)OC2C(C(C(C(O2)CO)O)OCc3ccccc3)O" # _pdbx_chem_comp_identifier.comp_id A1JZ9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-(4-methoxyphenoxy)-4-phenylmethoxy-oxane-3,5-diol" # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support A1JZ9 "CARBOHYDRATE ISOMER" D PDB ? A1JZ9 "CARBOHYDRATE RING" pyranose PDB ? A1JZ9 "CARBOHYDRATE ANOMER" beta PDB ? A1JZ9 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JZ9 _pdbx_chem_comp_synonyms.name "(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-(4-methoxyphenoxy)-4-phenylmethoxy-oxane-3,5-diol" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_related.comp_id A1JZ9 _pdbx_chem_comp_related.related_comp_id GAL _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 A1JZ9 C6 GAL C6 "Carbohydrate core" 2 A1JZ9 O4 GAL O4 "Carbohydrate core" 3 A1JZ9 C4 GAL C4 "Carbohydrate core" 4 A1JZ9 C3 GAL C3 "Carbohydrate core" 5 A1JZ9 O3 GAL O3 "Carbohydrate core" 6 A1JZ9 C2 GAL C2 "Carbohydrate core" 7 A1JZ9 O2 GAL O2 "Carbohydrate core" 8 A1JZ9 C1 GAL C1 "Carbohydrate core" 9 A1JZ9 O1 GAL O1 "Carbohydrate core" 10 A1JZ9 O5 GAL O5 "Carbohydrate core" 11 A1JZ9 C5 GAL C5 "Carbohydrate core" 12 A1JZ9 O6 GAL O6 "Carbohydrate core" 13 A1JZ9 H61 GAL H61 "Carbohydrate core" 14 A1JZ9 H62 GAL H62 "Carbohydrate core" 15 A1JZ9 HO4 GAL HO4 "Carbohydrate core" 16 A1JZ9 H4 GAL H4 "Carbohydrate core" 17 A1JZ9 H3 GAL H3 "Carbohydrate core" 18 A1JZ9 H2 GAL H2 "Carbohydrate core" 19 A1JZ9 HO2 GAL HO2 "Carbohydrate core" 20 A1JZ9 H1 GAL H1 "Carbohydrate core" 21 A1JZ9 H5 GAL H5 "Carbohydrate core" 22 A1JZ9 HO6 GAL HO6 "Carbohydrate core" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JZ9 "Create component" 2026-02-20 PDBE A1JZ9 "Initial release" 2026-09-16 RCSB #