data_A1KBG # _chem_comp.id A1KBG _chem_comp.name "4-[[[6-[5-chloranyl-2-[[4-[[(2~{R})-1-methoxypropan-2-yl]amino]phenyl]amino]pyridin-4-yl]pyridin-2-yl]amino]methyl]oxane-4-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 Cl N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-06-23 _chem_comp.pdbx_modified_date 2026-08-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.027 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1KBG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 31SV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1KBG C10 C1 C 0 1 Y N N N N N 40.736 -14.585 -7.855 -1.026 0.243 1.689 C10 A1KBG 1 A1KBG C15 C2 C 0 1 Y N N N N N 37.637 -13.034 -9.531 1.925 -1.610 0.263 C15 A1KBG 2 A1KBG C11 C3 C 0 1 Y N N N N N 39.472 -14.476 -8.414 0.270 -0.196 1.512 C11 A1KBG 3 A1KBG C12 C4 C 0 1 Y N N N N N 39.025 -13.243 -8.895 0.545 -1.112 0.489 C12 A1KBG 4 A1KBG C13 C5 C 0 1 Y N N N N N 39.896 -12.162 -8.787 -0.511 -1.545 -0.313 C13 A1KBG 5 A1KBG C01 C6 C 0 1 Y N N N N N 43.017 -8.463 -11.084 -6.612 0.265 -0.394 C01 A1KBG 6 A1KBG C02 C7 C 0 1 Y N N N N N 42.469 -8.040 -9.886 -5.467 1.030 -0.217 C02 A1KBG 7 A1KBG C03 C8 C 0 1 Y N N N N N 42.170 -8.971 -8.906 -4.221 0.454 -0.370 C03 A1KBG 8 A1KBG C04 C9 C 0 1 Y N N N N N 42.412 -10.317 -9.119 -4.114 -0.891 -0.702 C04 A1KBG 9 A1KBG C05 C10 C 0 1 Y N N N N N 42.968 -10.741 -10.315 -5.260 -1.656 -0.879 C05 A1KBG 10 A1KBG C06 C11 C 0 1 Y N N N N N 43.269 -9.809 -11.299 -6.505 -1.079 -0.726 C06 A1KBG 11 A1KBG C08 C12 C 0 1 Y N N N N N 41.149 -12.358 -8.218 -1.787 -1.053 -0.067 C08 A1KBG 12 A1KBG C17 C13 C 0 1 Y N N N N N 36.402 -12.178 -11.311 4.173 -1.149 -0.022 C17 A1KBG 13 A1KBG C18 C14 C 0 1 Y N N N N N 35.208 -12.589 -10.741 4.468 -2.502 -0.162 C18 A1KBG 14 A1KBG C19 C15 C 0 1 Y N N N N N 35.246 -13.246 -9.514 3.444 -3.431 -0.079 C19 A1KBG 15 A1KBG C20 C16 C 0 1 Y N N N N N 36.477 -13.464 -8.900 2.152 -2.976 0.132 C20 A1KBG 16 A1KBG C23 C17 C 0 1 N N R N N N 44.376 -6.510 -11.863 -9.083 0.041 -0.420 C23 A1KBG 17 A1KBG C24 C18 C 0 1 N N N N N N 44.399 -5.506 -13.011 -9.450 0.008 -1.905 C24 A1KBG 18 A1KBG C25 C19 C 0 1 N N N N N N 45.725 -7.223 -11.772 -10.236 0.656 0.376 C25 A1KBG 19 A1KBG C27 C20 C 0 1 N N N N N N 47.575 -7.465 -13.191 -11.622 2.606 0.515 C27 A1KBG 20 A1KBG C28 C21 C 0 1 N N N N N N 37.619 -11.411 -13.373 6.574 -0.648 -0.338 C28 A1KBG 21 A1KBG C29 C22 C 0 1 N N N N N N 38.238 -10.014 -13.274 7.495 0.573 -0.385 C29 A1KBG 22 A1KBG C30 C23 C 0 1 N N N N N N 39.385 -9.950 -14.182 8.936 0.118 -0.633 C30 A1KBG 23 A1KBG C31 C24 C 0 1 N N N N N N 40.128 -8.622 -14.051 9.837 1.350 -0.757 C31 A1KBG 24 A1KBG C33 C25 C 0 1 N N N N N N 37.822 -7.654 -14.047 8.032 2.678 -1.614 C33 A1KBG 25 A1KBG C34 C26 C 0 1 N N N N N N 37.218 -8.997 -13.636 7.058 1.500 -1.524 C34 A1KBG 26 A1KBG C35 C27 C 0 1 N N N N N N 38.749 -9.754 -11.777 7.420 1.296 0.895 C35 A1KBG 27 A1KBG N07 N1 N 0 1 N N N N N N 42.093 -11.265 -8.067 -2.851 -1.475 -0.858 N07 A1KBG 28 A1KBG N09 N2 N 0 1 Y N N N N N 41.524 -13.536 -7.770 -2.002 -0.187 0.912 N09 A1KBG 29 A1KBG N16 N3 N 0 1 Y N N N N N 37.550 -12.413 -10.696 2.930 -0.746 0.183 N16 A1KBG 30 A1KBG N21 N4 N 0 1 N N N N N N 36.394 -11.491 -12.595 5.195 -0.211 -0.105 N21 A1KBG 31 A1KBG N22 N5 N 0 1 N N N N N N 43.331 -7.486 -12.109 -7.875 0.848 -0.233 N22 A1KBG 32 A1KBG N36 N6 N 0 1 N N N N N N 39.115 -9.572 -10.720 7.362 1.855 1.882 N36 A1KBG 33 A1KBG O26 O1 O 0 1 N N N N N N 46.181 -7.477 -13.069 -10.553 1.941 -0.161 O26 A1KBG 34 A1KBG O32 O2 O 0 1 N N N N N N 39.247 -7.475 -13.721 9.359 2.183 -1.815 O32 A1KBG 35 A1KBG CL14 CL1 CL 0 0 N N N N N N 38.460 -15.944 -8.494 1.543 0.379 2.542 CL14 A1KBG 36 A1KBG H1 H1 H 0 1 N N N N N N 41.077 -15.541 -7.486 -1.245 0.946 2.479 H1 A1KBG 37 A1KBG H2 H2 H 0 1 N N N N N N 39.602 -11.185 -9.140 -0.340 -2.250 -1.112 H2 A1KBG 38 A1KBG H3 H3 H 0 1 N N N N N N 42.276 -6.991 -9.717 -5.550 2.075 0.041 H3 A1KBG 39 A1KBG H4 H4 H 0 1 N N N N N N 41.745 -8.645 -7.968 -3.331 1.049 -0.233 H4 A1KBG 40 A1KBG H5 H5 H 0 1 N N N N N N 43.166 -11.790 -10.481 -5.176 -2.701 -1.137 H5 A1KBG 41 A1KBG H6 H6 H 0 1 N N N N N N 43.701 -10.134 -12.234 -7.396 -1.674 -0.863 H6 A1KBG 42 A1KBG H7 H7 H 0 1 N N N N N N 34.267 -12.404 -11.238 5.485 -2.825 -0.330 H7 A1KBG 43 A1KBG H8 H8 H 0 1 N N N N N N 34.333 -13.582 -9.045 3.648 -4.486 -0.184 H8 A1KBG 44 A1KBG H9 H9 H 0 1 N N N N N N 36.529 -13.962 -7.943 1.331 -3.675 0.194 H9 A1KBG 45 A1KBG H10 H10 H 0 1 N N N N N N 44.185 -5.977 -10.920 -8.900 -0.975 -0.069 H10 A1KBG 46 A1KBG H11 H11 H 0 1 N N N N N N 45.189 -4.762 -12.832 -8.629 -0.430 -2.473 H11 A1KBG 47 A1KBG H12 H12 H 0 1 N N N N N N 44.599 -6.033 -13.955 -10.349 -0.592 -2.045 H12 A1KBG 48 A1KBG H13 H13 H 0 1 N N N N N N 43.425 -4.999 -13.074 -9.633 1.023 -2.257 H13 A1KBG 49 A1KBG H14 H14 H 0 1 N N N N N N 45.607 -8.172 -11.228 -11.110 0.008 0.309 H14 A1KBG 50 A1KBG H15 H15 H 0 1 N N N N N N 46.447 -6.584 -11.243 -9.940 0.761 1.420 H15 A1KBG 51 A1KBG H16 H16 H 0 1 N N N N N N 47.854 -7.672 -14.235 -11.801 3.574 0.048 H16 A1KBG 52 A1KBG H17 H17 H 0 1 N N N N N N 47.960 -6.477 -12.897 -12.525 1.999 0.451 H17 A1KBG 53 A1KBG H18 H18 H 0 1 N N N N N N 48.007 -8.236 -12.536 -11.356 2.751 1.562 H18 A1KBG 54 A1KBG H19 H19 H 0 1 N N N N N N 37.392 -11.630 -14.427 6.630 -1.183 -1.286 H19 A1KBG 55 A1KBG H20 H20 H 0 1 N N N N N N 38.337 -12.151 -12.991 6.887 -1.308 0.471 H20 A1KBG 56 A1KBG H21 H21 H 0 1 N N N N N N 39.028 -10.060 -15.217 9.273 -0.497 0.202 H21 A1KBG 57 A1KBG H22 H22 H 0 1 N N N N N N 40.076 -10.772 -13.943 8.982 -0.461 -1.555 H22 A1KBG 58 A1KBG H23 H23 H 0 1 N N N N N N 40.880 -8.722 -13.255 9.823 1.907 0.179 H23 A1KBG 59 A1KBG H24 H24 H 0 1 N N N N N N 40.631 -8.410 -15.006 10.857 1.033 -0.976 H24 A1KBG 60 A1KBG H25 H25 H 0 1 N N N N N N 37.256 -6.858 -13.541 7.752 3.318 -2.451 H25 A1KBG 61 A1KBG H26 H26 H 0 1 N N N N N N 37.707 -7.550 -15.136 7.995 3.253 -0.689 H26 A1KBG 62 A1KBG H27 H27 H 0 1 N N N N N N 36.564 -8.834 -12.767 7.066 0.949 -2.464 H27 A1KBG 63 A1KBG H28 H28 H 0 1 N N N N N N 36.622 -9.384 -14.476 6.053 1.872 -1.327 H28 A1KBG 64 A1KBG H29 H29 H 0 1 N N N N N N 42.551 -11.159 -7.185 -2.718 -2.174 -1.517 H29 A1KBG 65 A1KBG H30 H30 H 0 1 N N N N N N 36.099 -10.552 -12.420 4.995 0.734 -0.008 H30 A1KBG 66 A1KBG H31 H31 H 0 1 N N N N N N 42.491 -6.975 -12.292 -7.950 1.785 0.002 H31 A1KBG 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1KBG C30 C31 SING N N 1 A1KBG C30 C29 SING N N 2 A1KBG C31 O32 SING N N 3 A1KBG C33 O32 SING N N 4 A1KBG C33 C34 SING N N 5 A1KBG C34 C29 SING N N 6 A1KBG C28 C29 SING N N 7 A1KBG C28 N21 SING N N 8 A1KBG C29 C35 SING N N 9 A1KBG C27 O26 SING N N 10 A1KBG O26 C25 SING N N 11 A1KBG C24 C23 SING N N 12 A1KBG N21 C17 SING N N 13 A1KBG N22 C23 SING N N 14 A1KBG N22 C01 SING N N 15 A1KBG C23 C25 SING N N 16 A1KBG C35 N36 TRIP N N 17 A1KBG C17 C18 DOUB Y N 18 A1KBG C17 N16 SING Y N 19 A1KBG C06 C01 DOUB Y N 20 A1KBG C06 C05 SING Y N 21 A1KBG C01 C02 SING Y N 22 A1KBG C18 C19 SING Y N 23 A1KBG N16 C15 DOUB Y N 24 A1KBG C05 C04 DOUB Y N 25 A1KBG C02 C03 DOUB Y N 26 A1KBG C15 C20 SING Y N 27 A1KBG C15 C12 SING N N 28 A1KBG C19 C20 DOUB Y N 29 A1KBG C04 C03 SING Y N 30 A1KBG C04 N07 SING N N 31 A1KBG C12 C13 DOUB Y N 32 A1KBG C12 C11 SING Y N 33 A1KBG C13 C08 SING Y N 34 A1KBG CL14 C11 SING N N 35 A1KBG C11 C10 DOUB Y N 36 A1KBG C08 N07 SING N N 37 A1KBG C08 N09 DOUB Y N 38 A1KBG C10 N09 SING Y N 39 A1KBG C10 H1 SING N N 40 A1KBG C13 H2 SING N N 41 A1KBG C02 H3 SING N N 42 A1KBG C03 H4 SING N N 43 A1KBG C05 H5 SING N N 44 A1KBG C06 H6 SING N N 45 A1KBG C18 H7 SING N N 46 A1KBG C19 H8 SING N N 47 A1KBG C20 H9 SING N N 48 A1KBG C23 H10 SING N N 49 A1KBG C24 H11 SING N N 50 A1KBG C24 H12 SING N N 51 A1KBG C24 H13 SING N N 52 A1KBG C25 H14 SING N N 53 A1KBG C25 H15 SING N N 54 A1KBG C27 H16 SING N N 55 A1KBG C27 H17 SING N N 56 A1KBG C27 H18 SING N N 57 A1KBG C28 H19 SING N N 58 A1KBG C28 H20 SING N N 59 A1KBG C30 H21 SING N N 60 A1KBG C30 H22 SING N N 61 A1KBG C31 H23 SING N N 62 A1KBG C31 H24 SING N N 63 A1KBG C33 H25 SING N N 64 A1KBG C33 H26 SING N N 65 A1KBG C34 H27 SING N N 66 A1KBG C34 H28 SING N N 67 A1KBG N07 H29 SING N N 68 A1KBG N21 H30 SING N N 69 A1KBG N22 H31 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1KBG InChI InChI 1.06 "InChI=1S/C27H31ClN6O2/c1-19(16-35-2)32-20-6-8-21(9-7-20)33-26-14-22(23(28)15-30-26)24-4-3-5-25(34-24)31-18-27(17-29)10-12-36-13-11-27/h3-9,14-15,19,32H,10-13,16,18H2,1-2H3,(H,30,33)(H,31,34)/t19-/m1/s1" A1KBG InChIKey InChI 1.06 UVPKAZQHBPKUOM-LJQANCHMSA-N A1KBG SMILES_CANONICAL CACTVS 3.385 "COC[C@@H](C)Nc1ccc(Nc2cc(c(Cl)cn2)c3cccc(NCC4(CCOCC4)C#N)n3)cc1" A1KBG SMILES CACTVS 3.385 "COC[CH](C)Nc1ccc(Nc2cc(c(Cl)cn2)c3cccc(NCC4(CCOCC4)C#N)n3)cc1" A1KBG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](COC)Nc1ccc(cc1)Nc2cc(c(cn2)Cl)c3cccc(n3)NCC4(CCOCC4)C#N" A1KBG SMILES "OpenEye OEToolkits" 2.0.7 "CC(COC)Nc1ccc(cc1)Nc2cc(c(cn2)Cl)c3cccc(n3)NCC4(CCOCC4)C#N" # _pdbx_chem_comp_identifier.comp_id A1KBG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[[6-[5-chloranyl-2-[[4-[[(2~{R})-1-methoxypropan-2-yl]amino]phenyl]amino]pyridin-4-yl]pyridin-2-yl]amino]methyl]oxane-4-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1KBG "Create component" 2026-06-23 PDBE A1KBG "Initial release" 2026-08-12 RCSB #