data_A1KD0 # _chem_comp.id A1KD0 _chem_comp.name "cis-dodec-5-enoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H22 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(Z)-dodec-5-enoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-07-14 _chem_comp.pdbx_modified_date 2026-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 198.302 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1KD0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RJD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1KD0 C1 C1 C 0 1 N N N N N N -12.140 11.653 25.784 4.864 0.816 0.083 C1 A1KD0 1 A1KD0 C2 C2 C 0 1 N N N N N N -13.201 10.579 25.921 3.438 0.805 -0.403 C2 A1KD0 2 A1KD0 C3 C3 C 0 1 N N N N N N -14.120 10.752 27.127 2.829 -0.579 -0.170 C3 A1KD0 3 A1KD0 C4 C4 C 0 1 N N N N N N -15.202 9.701 27.193 1.381 -0.589 -0.663 C4 A1KD0 4 A1KD0 C5 C5 C 0 1 N N N N N N -15.822 9.541 28.538 0.782 -1.953 -0.434 C5 A1KD0 5 A1KD0 C6 C6 C 0 1 N N N N N N -16.005 8.398 29.179 -0.356 -2.069 0.206 C6 A1KD0 6 A1KD0 C7 C7 C 0 1 N N N N N N -15.650 7.011 28.755 -1.149 -0.838 0.562 C7 A1KD0 7 A1KD0 O1 O1 O 0 1 N N N N N N -12.448 12.725 25.226 5.346 -0.183 0.561 O1 A1KD0 8 A1KD0 C8 C8 C 0 1 N N N N N N -16.124 6.008 29.807 -2.578 -0.982 0.034 C8 A1KD0 9 A1KD0 C9 C9 C 0 1 N N N N N N -15.707 4.566 29.605 -3.383 0.268 0.395 C9 A1KD0 10 A1KD0 C10 C10 C 0 1 N N N N N N -16.558 3.615 30.432 -4.812 0.124 -0.133 C10 A1KD0 11 A1KD0 C11 C11 C 0 1 N N N N N N -16.618 3.924 31.917 -5.617 1.374 0.229 C11 A1KD0 12 A1KD0 C12 C12 C 0 1 N N N N N N -17.563 3.030 32.679 -7.046 1.230 -0.300 C12 A1KD0 13 A1KD0 O2 O2 O 0 1 N N N N N N -10.993 11.419 26.187 5.601 1.933 -0.022 O2 A1KD0 14 A1KD0 H1 H1 H 0 1 N N N N N N -13.820 10.589 25.012 2.862 1.552 0.144 H1 A1KD0 15 A1KD0 H2 H2 H 0 1 N N N N N N -12.696 9.606 26.010 3.415 1.038 -1.468 H2 A1KD0 16 A1KD0 H3 H3 H 0 1 N N N N N N -13.514 10.690 28.043 3.405 -1.326 -0.717 H3 A1KD0 17 A1KD0 H4 H4 H 0 1 N N N N N N -14.595 11.742 27.068 2.852 -0.811 0.895 H4 A1KD0 18 A1KD0 H5 H5 H 0 1 N N N N N N -15.993 9.976 26.480 0.806 0.157 -0.116 H5 A1KD0 19 A1KD0 H6 H6 H 0 1 N N N N N N -14.763 8.736 26.899 1.358 -0.357 -1.728 H6 A1KD0 20 A1KD0 H7 H7 H 0 1 N N N N N N -16.153 10.441 29.036 1.290 -2.834 -0.796 H7 A1KD0 21 A1KD0 H8 H8 H 0 1 N N N N N N -16.478 8.480 30.146 -0.725 -3.047 0.478 H8 A1KD0 22 A1KD0 H9 H9 H 0 1 N N N N N N -16.136 6.788 27.793 -1.172 -0.722 1.646 H9 A1KD0 23 A1KD0 H10 H10 H 0 1 N N N N N N -14.559 6.932 28.642 -0.682 0.038 0.113 H10 A1KD0 24 A1KD0 H11 H11 H 0 1 N N N N N N -15.732 6.336 30.781 -2.554 -1.098 -1.050 H11 A1KD0 25 A1KD0 H12 H12 H 0 1 N N N N N N -17.223 6.038 29.825 -3.045 -1.858 0.483 H12 A1KD0 26 A1KD0 H13 H13 H 0 1 N N N N N N -15.816 4.309 28.541 -3.406 0.384 1.479 H13 A1KD0 27 A1KD0 H14 H14 H 0 1 N N N N N N -14.654 4.454 29.903 -2.916 1.144 -0.054 H14 A1KD0 28 A1KD0 H15 H15 H 0 1 N N N N N N -17.584 3.646 30.037 -4.788 0.008 -1.217 H15 A1KD0 29 A1KD0 H16 H16 H 0 1 N N N N N N -16.149 2.601 30.312 -5.279 -0.752 0.316 H16 A1KD0 30 A1KD0 H17 H17 H 0 1 N N N N N N -15.609 3.804 32.339 -5.641 1.490 1.312 H17 A1KD0 31 A1KD0 H18 H18 H 0 1 N N N N N N -16.947 4.966 32.043 -5.150 2.250 -0.221 H18 A1KD0 32 A1KD0 H19 H19 H 0 1 N N N N N N -17.555 3.310 33.743 -7.022 1.114 -1.383 H19 A1KD0 33 A1KD0 H20 H20 H 0 1 N N N N N N -18.580 3.145 32.277 -7.513 0.354 0.150 H20 A1KD0 34 A1KD0 H21 H21 H 0 1 N N N N N N -17.243 1.983 32.573 -7.620 2.120 -0.042 H21 A1KD0 35 A1KD0 H22 H22 H 0 1 N N N N N N -10.433 12.164 26.001 6.510 1.891 0.304 H22 A1KD0 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1KD0 O1 C1 DOUB N N 1 A1KD0 C1 C2 SING N N 2 A1KD0 C1 O2 SING N N 3 A1KD0 C2 C3 SING N N 4 A1KD0 C3 C4 SING N N 5 A1KD0 C4 C5 SING N N 6 A1KD0 C5 C6 DOUB N Z 7 A1KD0 C7 C6 SING N N 8 A1KD0 C7 C8 SING N N 9 A1KD0 C9 C8 SING N N 10 A1KD0 C9 C10 SING N N 11 A1KD0 C10 C11 SING N N 12 A1KD0 C11 C12 SING N N 13 A1KD0 C2 H1 SING N N 14 A1KD0 C2 H2 SING N N 15 A1KD0 C3 H3 SING N N 16 A1KD0 C3 H4 SING N N 17 A1KD0 C4 H5 SING N N 18 A1KD0 C4 H6 SING N N 19 A1KD0 C5 H7 SING N N 20 A1KD0 C6 H8 SING N N 21 A1KD0 C7 H9 SING N N 22 A1KD0 C7 H10 SING N N 23 A1KD0 C8 H11 SING N N 24 A1KD0 C8 H12 SING N N 25 A1KD0 C9 H13 SING N N 26 A1KD0 C9 H14 SING N N 27 A1KD0 C10 H15 SING N N 28 A1KD0 C10 H16 SING N N 29 A1KD0 C11 H17 SING N N 30 A1KD0 C11 H18 SING N N 31 A1KD0 C12 H19 SING N N 32 A1KD0 C12 H20 SING N N 33 A1KD0 C12 H21 SING N N 34 A1KD0 O2 H22 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1KD0 InChI InChI 1.06 "InChI=1S/C12H22O2/c1-2-3-4-5-6-7-8-9-10-11-12(13)14/h7-8H,2-6,9-11H2,1H3,(H,13,14)/b8-7-" A1KD0 InChIKey InChI 1.06 IJBFSOLHRKELLR-FPLPWBNLSA-N A1KD0 SMILES_CANONICAL CACTVS 3.385 "CCCCCC\C=C/CCCC(O)=O" A1KD0 SMILES CACTVS 3.385 "CCCCCCC=CCCCC(O)=O" A1KD0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCC/C=C\CCCC(=O)O" A1KD0 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCC=CCCCC(=O)O" # _pdbx_chem_comp_identifier.comp_id A1KD0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{Z})-dodec-5-enoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1KD0 "Create component" 2026-07-14 PDBE A1KD0 "Modify name" 2026-07-16 PDBE A1KD0 "Initial release" 2026-07-22 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1KD0 _pdbx_chem_comp_synonyms.name "(Z)-dodec-5-enoic acid" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #