data_A1KED # _chem_comp.id A1KED _chem_comp.name "~{N}-(cyclohexylmethyl)-4-(4-fluoranyl-2-methylsulfanyl-phenyl)-~{N}-methyl-2-methylsulfonyl-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H28 F N O3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-07-21 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 449.602 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1KED _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 32QL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1KED C1 C1 C 0 1 N N N N N N -22.226 -11.126 9.429 4.551 3.360 -1.771 C1 A1KED 1 A1KED C3 C2 C 0 1 Y N N N N N -20.708 -8.784 9.199 4.162 1.128 -0.127 C3 A1KED 2 A1KED C4 C3 C 0 1 Y N N N N N -19.589 -8.022 9.583 3.495 0.093 0.542 C4 A1KED 3 A1KED C5 C4 C 0 1 Y N N N N N -18.311 -8.596 10.078 2.032 -0.071 0.387 C5 A1KED 4 A1KED C7 C5 C 0 1 Y N N N N N -17.117 -10.016 11.624 0.150 -1.476 -0.079 C7 A1KED 5 A1KED C12 C6 C 0 1 Y N N N N N -15.883 -9.580 11.121 -0.703 -0.383 0.097 C12 A1KED 6 A1KED C13 C7 C 0 1 N N N N N N -14.550 -10.119 11.564 -2.162 -0.553 -0.059 C13 A1KED 7 A1KED C15 C8 C 0 1 N N N N N N -14.150 -8.039 12.843 -2.061 0.868 -2.036 C15 A1KED 8 A1KED S2 S1 S 0 1 N N N N N N -20.559 -10.543 9.090 3.263 2.240 -1.156 S2 A1KED 9 A1KED C6 C9 C 0 1 Y N N N N N -18.313 -9.533 11.119 1.500 -1.321 0.065 C6 A1KED 10 A1KED S8 S2 S 0 1 N N N N N N -17.263 -11.241 12.887 -0.516 -3.056 -0.485 S8 A1KED 11 A1KED C9 C10 C 0 1 N N N N N N -17.289 -12.727 11.964 -1.286 -3.632 1.053 C9 A1KED 12 A1KED O10 O1 O 0 1 N N N N N N -18.538 -11.054 13.512 -1.506 -2.777 -1.465 O10 A1KED 13 A1KED O11 O2 O 0 1 N N N N N N -16.071 -11.216 13.686 0.623 -3.846 -0.799 O11 A1KED 14 A1KED N14 N1 N 0 1 N N N N N N -13.753 -9.341 12.323 -2.813 0.089 -1.050 N14 A1KED 15 A1KED C16 C11 C 0 1 N N N N N N -12.429 -9.805 12.722 -4.273 0.006 -1.140 C16 A1KED 16 A1KED C17 C12 C 0 1 N N N N N N -11.268 -9.216 12.018 -4.898 1.148 -0.337 C17 A1KED 17 A1KED C18 C13 C 0 1 N N N N N N -11.293 -9.584 10.541 -4.574 0.965 1.147 C18 A1KED 18 A1KED C19 C14 C 0 1 N N N N N N -10.070 -9.057 9.808 -5.200 2.107 1.951 C19 A1KED 19 A1KED C20 C15 C 0 1 N N N N N N -8.804 -9.590 10.416 -6.717 2.096 1.755 C20 A1KED 20 A1KED C21 C16 C 0 1 N N N N N N -8.728 -9.210 11.881 -7.042 2.279 0.272 C21 A1KED 21 A1KED C22 C17 C 0 1 N N N N N N -9.957 -9.692 12.645 -6.416 1.137 -0.532 C22 A1KED 22 A1KED O23 O3 O 0 1 N N N N N N -14.215 -11.251 11.238 -2.775 -1.271 0.706 O23 A1KED 23 A1KED C24 C18 C 0 1 Y N N N N N -15.896 -8.639 10.104 -0.176 0.869 0.425 C24 A1KED 24 A1KED C25 C19 C 0 1 Y N N N N N -17.087 -8.160 9.588 1.184 1.023 0.569 C25 A1KED 25 A1KED C26 C20 C 0 1 Y N N N N N -19.704 -6.631 9.590 4.215 -0.782 1.354 C26 A1KED 26 A1KED C27 C21 C 0 1 Y N N N N N -20.887 -6.006 9.236 5.578 -0.627 1.495 C27 A1KED 27 A1KED C28 C22 C 0 1 Y N N N N N -21.942 -6.785 8.879 6.238 0.398 0.832 C28 A1KED 28 A1KED F29 F1 F 0 1 N N N N N N -23.111 -6.188 8.545 7.573 0.542 0.976 F29 A1KED 29 A1KED C30 C23 C 0 1 Y N N N N N -21.893 -8.152 8.853 5.534 1.276 0.029 C30 A1KED 30 A1KED H1 H1 H 0 1 N N N N N N -22.247 -12.225 9.386 4.103 4.103 -2.429 H1 A1KED 31 A1KED H2 H2 H 0 1 N N N N N N -22.534 -10.793 10.431 5.029 3.861 -0.929 H2 A1KED 32 A1KED H3 H3 H 0 1 N N N N N N -22.917 -10.717 8.678 5.297 2.787 -2.323 H3 A1KED 33 A1KED H4 H4 H 0 1 N N N N N N -13.324 -7.610 13.429 -1.709 0.208 -2.829 H4 A1KED 34 A1KED H5 H5 H 0 1 N N N N N N -14.392 -7.368 12.006 -2.707 1.635 -2.462 H5 A1KED 35 A1KED H6 H6 H 0 1 N N N N N N -15.034 -8.156 13.487 -1.206 1.340 -1.551 H6 A1KED 36 A1KED H7 H7 H 0 1 N N N N N N -19.250 -9.880 11.529 2.156 -2.168 -0.071 H7 A1KED 37 A1KED H8 H8 H 0 1 N N N N N N -17.379 -13.583 12.649 -2.130 -2.987 1.300 H8 A1KED 38 A1KED H9 H9 H 0 1 N N N N N N -18.147 -12.716 11.276 -1.637 -4.655 0.922 H9 A1KED 39 A1KED H10 H10 H 0 1 N N N N N N -16.357 -12.816 11.386 -0.554 -3.599 1.860 H10 A1KED 40 A1KED H11 H11 H 0 1 N N N N N N -12.397 -10.893 12.562 -4.577 0.087 -2.184 H11 A1KED 41 A1KED H12 H12 H 0 1 N N N N N N -12.311 -9.589 13.794 -4.609 -0.949 -0.736 H12 A1KED 42 A1KED H13 H13 H 0 1 N N N N N N -11.315 -8.120 12.104 -4.495 2.100 -0.683 H13 A1KED 43 A1KED H14 H14 H 0 1 N N N N N N -12.196 -9.155 10.082 -4.978 0.014 1.493 H14 A1KED 44 A1KED H15 H15 H 0 1 N N N N N N -11.320 -10.680 10.447 -3.493 0.973 1.286 H15 A1KED 45 A1KED H16 H16 H 0 1 N N N N N N -10.062 -7.959 9.866 -4.968 1.977 3.008 H16 A1KED 46 A1KED H17 H17 H 0 1 N N N N N N -10.121 -9.368 8.754 -4.796 3.059 1.605 H17 A1KED 47 A1KED H18 H18 H 0 1 N N N N N N -8.790 -10.686 10.323 -7.121 1.145 2.101 H18 A1KED 48 A1KED H19 H19 H 0 1 N N N N N N -7.939 -9.166 9.885 -7.163 2.910 2.328 H19 A1KED 49 A1KED H20 H20 H 0 1 N N N N N N -7.830 -9.666 12.323 -8.123 2.271 0.133 H20 A1KED 50 A1KED H21 H21 H 0 1 N N N N N N -8.662 -8.115 11.964 -6.638 3.231 -0.074 H21 A1KED 51 A1KED H22 H22 H 0 1 N N N N N N -9.953 -10.792 12.659 -6.647 1.268 -1.589 H22 A1KED 52 A1KED H23 H23 H 0 1 N N N N N N -9.902 -9.312 13.676 -6.820 0.186 -0.186 H23 A1KED 53 A1KED H24 H24 H 0 1 N N N N N N -14.960 -8.273 9.707 -0.835 1.714 0.566 H24 A1KED 54 A1KED H25 H25 H 0 1 N N N N N N -17.064 -7.433 8.789 1.595 1.989 0.823 H25 A1KED 55 A1KED H26 H26 H 0 1 N N N N N N -18.853 -6.031 9.877 3.706 -1.582 1.872 H26 A1KED 56 A1KED H27 H27 H 0 1 N N N N N N -20.970 -4.929 9.243 6.135 -1.306 2.125 H27 A1KED 57 A1KED H28 H28 H 0 1 N N N N N N -22.761 -8.728 8.568 6.052 2.072 -0.485 H28 A1KED 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1KED F29 C28 SING N N 1 A1KED C30 C28 DOUB Y N 2 A1KED C30 C3 SING Y N 3 A1KED C28 C27 SING Y N 4 A1KED S2 C3 SING N N 5 A1KED S2 C1 SING N N 6 A1KED C3 C4 DOUB Y N 7 A1KED C27 C26 DOUB Y N 8 A1KED C4 C26 SING Y N 9 A1KED C4 C5 SING N N 10 A1KED C25 C5 DOUB Y N 11 A1KED C25 C24 SING Y N 12 A1KED C19 C20 SING N N 13 A1KED C19 C18 SING N N 14 A1KED C5 C6 SING Y N 15 A1KED C24 C12 DOUB Y N 16 A1KED C20 C21 SING N N 17 A1KED C18 C17 SING N N 18 A1KED C6 C7 DOUB Y N 19 A1KED C12 C13 SING N N 20 A1KED C12 C7 SING Y N 21 A1KED O23 C13 DOUB N N 22 A1KED C13 N14 SING N N 23 A1KED C7 S8 SING N N 24 A1KED C21 C22 SING N N 25 A1KED C9 S8 SING N N 26 A1KED C17 C22 SING N N 27 A1KED C17 C16 SING N N 28 A1KED N14 C16 SING N N 29 A1KED N14 C15 SING N N 30 A1KED S8 O10 DOUB N N 31 A1KED S8 O11 DOUB N N 32 A1KED C1 H1 SING N N 33 A1KED C1 H2 SING N N 34 A1KED C1 H3 SING N N 35 A1KED C15 H4 SING N N 36 A1KED C15 H5 SING N N 37 A1KED C15 H6 SING N N 38 A1KED C6 H7 SING N N 39 A1KED C9 H8 SING N N 40 A1KED C9 H9 SING N N 41 A1KED C9 H10 SING N N 42 A1KED C16 H11 SING N N 43 A1KED C16 H12 SING N N 44 A1KED C17 H13 SING N N 45 A1KED C18 H14 SING N N 46 A1KED C18 H15 SING N N 47 A1KED C19 H16 SING N N 48 A1KED C19 H17 SING N N 49 A1KED C20 H18 SING N N 50 A1KED C20 H19 SING N N 51 A1KED C21 H20 SING N N 52 A1KED C21 H21 SING N N 53 A1KED C22 H22 SING N N 54 A1KED C22 H23 SING N N 55 A1KED C24 H24 SING N N 56 A1KED C25 H25 SING N N 57 A1KED C26 H26 SING N N 58 A1KED C27 H27 SING N N 59 A1KED C30 H28 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1KED InChI InChI 1.06 "InChI=1S/C23H28FNO3S2/c1-25(15-16-7-5-4-6-8-16)23(26)20-11-9-17(13-22(20)30(3,27)28)19-12-10-18(24)14-21(19)29-2/h9-14,16H,4-8,15H2,1-3H3" A1KED InChIKey InChI 1.06 MEFAYSLODGHXPL-UHFFFAOYSA-N A1KED SMILES_CANONICAL CACTVS 3.385 "CSc1cc(F)ccc1c2ccc(C(=O)N(C)CC3CCCCC3)c(c2)[S](C)(=O)=O" A1KED SMILES CACTVS 3.385 "CSc1cc(F)ccc1c2ccc(C(=O)N(C)CC3CCCCC3)c(c2)[S](C)(=O)=O" A1KED SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CC1CCCCC1)C(=O)c2ccc(cc2S(=O)(=O)C)c3ccc(cc3SC)F" A1KED SMILES "OpenEye OEToolkits" 2.0.7 "CN(CC1CCCCC1)C(=O)c2ccc(cc2S(=O)(=O)C)c3ccc(cc3SC)F" # _pdbx_chem_comp_identifier.comp_id A1KED _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(cyclohexylmethyl)-4-(4-fluoranyl-2-methylsulfanyl-phenyl)-~{N}-methyl-2-methylsulfonyl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1KED "Create component" 2026-07-21 PDBE A1KED "Initial release" 2026-07-29 RCSB #