data_A1KEF # _chem_comp.id A1KEF _chem_comp.name "4-(4-fluoranyl-2-methylsulfanyl-phenyl)-~{N}-methyl-2-methylsulfonyl-~{N}-[[(1~{S},2~{R})-2-oxidanylcyclohexyl]methyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H28 F N O4 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-07-21 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 465.601 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1KEF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 32QN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1KEF C2 C1 C 0 1 Y N N N N N -21.315 -15.188 -9.055 -6.468 0.452 -0.823 C2 A1KEF 1 A1KEF C3 C2 C 0 1 Y N N N N N -21.028 -14.285 -8.077 -5.750 1.330 -0.032 C3 A1KEF 2 A1KEF C4 C3 C 0 1 Y N N N N N -21.364 -14.613 -6.777 -4.380 1.166 0.121 C4 A1KEF 3 A1KEF C6 C4 C 0 1 N N N N N N -19.496 -12.820 -5.791 -4.732 3.434 1.723 C6 A1KEF 4 A1KEF F1 F1 F 0 1 N N N N N N -21.061 -14.829 -10.332 -7.800 0.618 -0.975 F1 A1KEF 5 A1KEF S5 S1 S 0 1 N N N N N N -21.182 -13.395 -5.512 -3.462 2.283 1.128 S5 A1KEF 6 A1KEF C7 C5 C 0 1 Y N N N N N -21.964 -15.844 -6.470 -3.730 0.107 -0.529 C7 A1KEF 7 A1KEF C8 C6 C 0 1 Y N N N N N -22.215 -16.350 -5.095 -2.270 -0.077 -0.372 C8 A1KEF 8 A1KEF C9 C7 C 0 1 Y N N N N N -23.384 -17.038 -4.785 -1.405 1.001 -0.570 C9 A1KEF 9 A1KEF C10 C8 C 0 1 Y N N N N N -23.588 -17.580 -3.526 -0.047 0.827 -0.423 C10 A1KEF 10 A1KEF C11 C9 C 0 1 Y N N N N N -22.623 -17.437 -2.534 0.460 -0.428 -0.077 C11 A1KEF 11 A1KEF C12 C10 C 0 1 N N N N N N -22.913 -17.931 -1.158 1.916 -0.618 0.082 C12 A1KEF 12 A1KEF N13 N1 N 0 1 N N N N N N -22.984 -19.256 -0.946 2.602 0.140 0.959 N13 A1KEF 13 A1KEF C14 C11 C 0 1 N N N N N N -22.695 -20.211 -1.996 1.890 1.071 1.838 C14 A1KEF 14 A1KEF C15 C12 C 0 1 N N N N N N -23.352 -19.783 0.360 4.062 0.034 1.033 C15 A1KEF 15 A1KEF C16 C13 C 0 1 N N S N N N -24.736 -20.405 0.378 4.696 1.034 0.064 C16 A1KEF 16 A1KEF C17 C14 C 0 1 N N R N N N -25.049 -21.054 1.725 6.216 1.012 0.231 C17 A1KEF 17 A1KEF O18 O1 O 0 1 N N N N N N -24.136 -22.123 1.999 6.554 1.370 1.573 O18 A1KEF 18 A1KEF C19 C15 C 0 1 N N N N N N -26.469 -21.574 1.798 6.850 2.012 -0.738 C19 A1KEF 19 A1KEF C20 C16 C 0 1 N N N N N N -27.440 -20.423 1.538 6.489 1.628 -2.175 C20 A1KEF 20 A1KEF C21 C17 C 0 1 N N N N N N -27.209 -19.814 0.180 4.969 1.651 -2.342 C21 A1KEF 21 A1KEF C22 C18 C 0 1 N N N N N N -25.769 -19.319 0.036 4.335 0.651 -1.372 C22 A1KEF 22 A1KEF O23 O2 O 0 1 N N N N N N -22.988 -17.131 -0.253 2.495 -1.459 -0.578 O23 A1KEF 23 A1KEF C24 C19 C 0 1 Y N N N N N -21.444 -16.746 -2.843 -0.411 -1.503 0.119 C24 A1KEF 24 A1KEF S25 S2 S 0 1 N N N N N N -20.098 -16.553 -1.678 0.229 -3.086 0.556 S25 A1KEF 25 A1KEF O26 O3 O 0 1 N N N N N N -20.107 -17.695 -0.803 -0.918 -3.838 0.927 O26 A1KEF 26 A1KEF C27 C20 C 0 1 N N N N N N -20.481 -15.135 -0.724 0.941 -3.727 -0.985 C27 A1KEF 27 A1KEF O28 O4 O 0 1 N N N N N N -18.918 -16.271 -2.443 1.255 -2.801 1.498 O28 A1KEF 28 A1KEF C29 C21 C 0 1 Y N N N N N -21.243 -16.212 -4.105 -1.758 -1.328 -0.022 C29 A1KEF 29 A1KEF C30 C22 C 0 1 Y N N N N N -22.231 -16.714 -7.524 -4.465 -0.771 -1.324 C30 A1KEF 30 A1KEF C31 C23 C 0 1 Y N N N N N -21.900 -16.384 -8.824 -5.826 -0.596 -1.467 C31 A1KEF 31 A1KEF H1 H1 H 0 1 N N N N N N -20.553 -13.343 -8.310 -6.255 2.144 0.466 H1 A1KEF 32 A1KEF H2 H2 H 0 1 N N N N N N -19.247 -12.041 -5.055 -5.202 3.927 0.873 H2 A1KEF 33 A1KEF H3 H3 H 0 1 N N N N N N -18.798 -13.664 -5.682 -5.485 2.884 2.287 H3 A1KEF 34 A1KEF H4 H4 H 0 1 N N N N N N -19.414 -12.404 -6.806 -4.271 4.182 2.368 H4 A1KEF 35 A1KEF H5 H5 H 0 1 N N N N N N -24.147 -17.152 -5.540 -1.800 1.969 -0.838 H5 A1KEF 36 A1KEF H6 H6 H 0 1 N N N N N N -24.501 -18.116 -3.314 0.624 1.659 -0.575 H6 A1KEF 37 A1KEF H7 H7 H 0 1 N N N N N N -22.814 -21.233 -1.606 1.700 0.591 2.798 H7 A1KEF 38 A1KEF H8 H8 H 0 1 N N N N N N -23.390 -20.056 -2.834 2.497 1.963 1.992 H8 A1KEF 39 A1KEF H9 H9 H 0 1 N N N N N N -21.662 -20.070 -2.345 0.942 1.351 1.378 H9 A1KEF 40 A1KEF H10 H10 H 0 1 N N N N N N -22.619 -20.551 0.648 4.391 0.255 2.049 H10 A1KEF 41 A1KEF H11 H11 H 0 1 N N N N N N -23.328 -18.960 1.090 4.367 -0.977 0.764 H11 A1KEF 42 A1KEF H12 H12 H 0 1 N N N N N N -24.781 -21.181 -0.400 4.321 2.035 0.278 H12 A1KEF 43 A1KEF H13 H13 H 0 1 N N N N N N -24.934 -20.282 2.500 6.591 0.011 0.017 H13 A1KEF 44 A1KEF H14 H14 H 0 1 N N N N N N -24.347 -22.513 2.839 7.504 1.377 1.751 H14 A1KEF 45 A1KEF H15 H15 H 0 1 N N N N N N -26.656 -21.994 2.797 6.476 3.013 -0.524 H15 A1KEF 46 A1KEF H16 H16 H 0 1 N N N N N N -26.614 -22.356 1.038 7.934 1.996 -0.619 H16 A1KEF 47 A1KEF H17 H17 H 0 1 N N N N N N -27.295 -19.650 2.307 6.941 2.341 -2.865 H17 A1KEF 48 A1KEF H18 H18 H 0 1 N N N N N N -28.471 -20.804 1.590 6.864 0.627 -2.389 H18 A1KEF 49 A1KEF H19 H19 H 0 1 N N N N N N -27.896 -18.965 0.045 4.594 2.651 -2.128 H19 A1KEF 50 A1KEF H20 H20 H 0 1 N N N N N N -27.407 -20.572 -0.592 4.711 1.377 -3.365 H20 A1KEF 51 A1KEF H21 H21 H 0 1 N N N N N N -25.610 -18.995 -1.003 4.709 -0.350 -1.586 H21 A1KEF 52 A1KEF H22 H22 H 0 1 N N N N N N -25.620 -18.465 0.713 3.251 0.666 -1.491 H22 A1KEF 53 A1KEF H23 H23 H 0 1 N N N N N N -19.685 -14.964 0.015 1.787 -3.107 -1.280 H23 A1KEF 54 A1KEF H24 H24 H 0 1 N N N N N N -20.562 -14.259 -1.385 1.278 -4.752 -0.830 H24 A1KEF 55 A1KEF H25 H25 H 0 1 N N N N N N -21.437 -15.291 -0.203 0.184 -3.707 -1.770 H25 A1KEF 56 A1KEF H26 H26 H 0 1 N N N N N N -20.326 -15.685 -4.324 -2.429 -2.160 0.135 H26 A1KEF 57 A1KEF H27 H27 H 0 1 N N N N N N -22.705 -17.663 -7.322 -3.970 -1.588 -1.827 H27 A1KEF 58 A1KEF H28 H28 H 0 1 N N N N N N -22.104 -17.066 -9.636 -6.394 -1.277 -2.083 H28 A1KEF 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1KEF F1 C2 SING N N 1 A1KEF C2 C31 DOUB Y N 2 A1KEF C2 C3 SING Y N 3 A1KEF C31 C30 SING Y N 4 A1KEF C3 C4 DOUB Y N 5 A1KEF C30 C7 DOUB Y N 6 A1KEF C4 C7 SING Y N 7 A1KEF C4 S5 SING N N 8 A1KEF C7 C8 SING N N 9 A1KEF C6 S5 SING N N 10 A1KEF C8 C9 DOUB Y N 11 A1KEF C8 C29 SING Y N 12 A1KEF C9 C10 SING Y N 13 A1KEF C29 C24 DOUB Y N 14 A1KEF C10 C11 DOUB Y N 15 A1KEF C24 C11 SING Y N 16 A1KEF C24 S25 SING N N 17 A1KEF C11 C12 SING N N 18 A1KEF O28 S25 DOUB N N 19 A1KEF C14 N13 SING N N 20 A1KEF S25 O26 DOUB N N 21 A1KEF S25 C27 SING N N 22 A1KEF C12 N13 SING N N 23 A1KEF C12 O23 DOUB N N 24 A1KEF N13 C15 SING N N 25 A1KEF C22 C21 SING N N 26 A1KEF C22 C16 SING N N 27 A1KEF C21 C20 SING N N 28 A1KEF C15 C16 SING N N 29 A1KEF C16 C17 SING N N 30 A1KEF C20 C19 SING N N 31 A1KEF C17 C19 SING N N 32 A1KEF C17 O18 SING N N 33 A1KEF C3 H1 SING N N 34 A1KEF C6 H2 SING N N 35 A1KEF C6 H3 SING N N 36 A1KEF C6 H4 SING N N 37 A1KEF C9 H5 SING N N 38 A1KEF C10 H6 SING N N 39 A1KEF C14 H7 SING N N 40 A1KEF C14 H8 SING N N 41 A1KEF C14 H9 SING N N 42 A1KEF C15 H10 SING N N 43 A1KEF C15 H11 SING N N 44 A1KEF C16 H12 SING N N 45 A1KEF C17 H13 SING N N 46 A1KEF O18 H14 SING N N 47 A1KEF C19 H15 SING N N 48 A1KEF C19 H16 SING N N 49 A1KEF C20 H17 SING N N 50 A1KEF C20 H18 SING N N 51 A1KEF C21 H19 SING N N 52 A1KEF C21 H20 SING N N 53 A1KEF C22 H21 SING N N 54 A1KEF C22 H22 SING N N 55 A1KEF C27 H23 SING N N 56 A1KEF C27 H24 SING N N 57 A1KEF C27 H25 SING N N 58 A1KEF C29 H26 SING N N 59 A1KEF C30 H27 SING N N 60 A1KEF C31 H28 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1KEF InChI InChI 1.06 "InChI=1S/C23H28FNO4S2/c1-25(14-16-6-4-5-7-20(16)26)23(27)19-10-8-15(12-22(19)31(3,28)29)18-11-9-17(24)13-21(18)30-2/h8-13,16,20,26H,4-7,14H2,1-3H3/t16-,20+/m0/s1" A1KEF InChIKey InChI 1.06 NNYKRLSYWOLMDN-OXJNMPFZSA-N A1KEF SMILES_CANONICAL CACTVS 3.385 "CSc1cc(F)ccc1c2ccc(C(=O)N(C)C[C@@H]3CCCC[C@H]3O)c(c2)[S](C)(=O)=O" A1KEF SMILES CACTVS 3.385 "CSc1cc(F)ccc1c2ccc(C(=O)N(C)C[CH]3CCCC[CH]3O)c(c2)[S](C)(=O)=O" A1KEF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C[C@@H]1CCCC[C@H]1O)C(=O)c2ccc(cc2S(=O)(=O)C)c3ccc(cc3SC)F" A1KEF SMILES "OpenEye OEToolkits" 2.0.7 "CN(CC1CCCCC1O)C(=O)c2ccc(cc2S(=O)(=O)C)c3ccc(cc3SC)F" # _pdbx_chem_comp_identifier.comp_id A1KEF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-(4-fluoranyl-2-methylsulfanyl-phenyl)-~{N}-methyl-2-methylsulfonyl-~{N}-[[(1~{S},2~{R})-2-oxidanylcyclohexyl]methyl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1KEF "Create component" 2026-07-21 PDBE A1KEF "Initial release" 2026-07-29 RCSB #